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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023672 ID=TCONS_00023672|Name=TCONS_00023672|organism=Clytia hemisphaerica|type=transcript|length=4450bpRun BLAST on NCBI protein sequence of TCONS_00023672-protein >TCONS_00023672-protein ID=TCONS_00023672-protein|Name=TCONS_00023672-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1412bp MNMAEEPDETWEEFYKTNQSISVHPSRITTENGRSGQPYCFCLNVTSVELRun BLAST on NCBI transcript from alignment at sc0000458:8106..41271+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023672 ID=TCONS_00023672|Name=TCONS_00023672|organism=Clytia hemisphaerica|type=transcript|length=33166bp|location=Sequence derived from alignment at sc0000458:8106..41271+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000458:8106..41271+ >TCONS_00023672 ID=TCONS_00023672|Name=TCONS_00023672|organism=Clytia hemisphaerica|type=CDS|length=144126bp|location=Sequence derived from alignment at sc0000458:8106..41271+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00023672 vs. Swiss-Prot (Human)
Match: NPHP4 (Nephrocystin-4 OS=Homo sapiens GN=NPHP4 PE=1 SV=2) HSP 1 Score: 776.548 bits (2004), Expect = 0.000e+0 Identity = 511/1414 (36.14%), Postives = 744/1414 (52.62%), Query Frame = 2
Query: 221 EFQLRVTFYDAANHYFFGSSWIGPIIKSEPISPGKHVIDFQEAIYFHTSINDVTIMLIFELVDAA---NPALETV--GWTWLRIFSYYDTLTDINETARP----QERKLDFYHGSPIALLQ--IPEPLEEFQQLRKVNMCMMLYTLQIHEQMESVISFVPANVPISGDDIIPGIEENTDDDSIIDILRSPLPLRTWPCHLNKLTVTLPPSIDRFEEYLCTVLNNERLQKDELQPDGSVVKIAERKLKVGVHNGWQFVQPPHIVYL--EKDTNQTSPNKFKXXXXXXXXXXXXXXXNYGTNYVGLMLRSRLELNEMIHHPLFAIVFLLEYVVNIPVSQPDIPXXXXXXXXXXXXXXXIPLAKKISIGIRVAAWSPFQNGMLSNQTITLDLKSYLPDNPFDQMVF---TSDLELDDMHFDSFGRIEFNFH---------------QTKAKRRESSLNRSMTRDIIGKSTDELIP---LPMTPVNQIVDNRMTPQDPGNINLLNAKPPLPYQGQYRMSPR---------GLXXXXXXXXXXXXXXXXXEPQYLEELPRKQLYSSLIVPATDAPHMAALSRVAHSLLYTIEYPKVTDAQGNAPFIINPEERITYNFSLENRDPLHTNEIVLQFLAVSR----CNN----RSVFFTFQFYRFPQTTTERLHLKKL-EGDITSDNTHPSILQRSARDGQPSDNSPPGLLIKYTVDPAYMQAGEKQTFLKYLLEQKLYIDMWDGDSMLLIGSTSTPLKYLLRQSQPAVQVSQELDVVYTEYAEDHPMLAGDINKTGL--PTGIKVALKAKLCMRMANVGYIPETNLEKMEELNKSVQTIVLQP-----TKGIMERTDRCKPSMKTSAKLMSDCDSELASVLLTKKQNTMMGKTNRMKKENIDKIRKRKMDRMNAVRQIEGTNEMA---SGFILMKEEKVQRTRDLRTIQMYRDKVKGDNIQAKLEDSITTEHILHASLGRTEFFEFSLKNPSNRDQVVFIKTNDEELKVITNPKEWRHFKKLYDLNTAMEEQMFSNSTEEGVKLFLRANENVHVPFKFQSFTSFNATPEMGPSHPLYVQSHTYSLQTFGKDTTLSSKQIKVSFTGNEMKPLAFLQLTIELHPHTIDQTFRFYHPEQAFLKKAIRLPPLHSIPGSSVNKTEKTSTLVTARCSDQTVICETHQVVSGEPQEIFLKVPCGISPNIKRXXXXXXXXXXCIKPCQIWQFYVHSLQRVDLTATEGQTSQLSILLKGTQSSRMVKCFPSHPAEIKISPSDSFMLMANGIQEISLKVNPLMAGRRMMFLNVVDQEFHQLVKSWLLMITCTEPVITKAFEVRQLVGGGAGSNKKISFTNPYPVKKTFKFHTNRLDLLKFKENGVMLGGGESHNICLCFLPQQSEGHSNVLVFINDRDGKNEETFCIKVIY 4276
E LRV+F+D +FFG +W +K P + I F E +YFHTS+N I+ + E+V + +L+T+ G+ LRIFS N+ P Q+++L YHG+P ALL + +P E+ + + + C + YTL+ H +E +P N+ +SG IPG+ + D LR P + HL+ L TL PS+++FEE L + + Q+ DG ++I ER+L+VGVHNG FVQ P +V L E D T F R S S L+LRSRL L EM+ HP FA++F LEYV + P S L +R A W+P + +TL L+ + NP +V+ ++ + +++ G + F F K +RR S + L P+ P I +P+ P L LP+ Q SP G+ H + ++ + L+ELP L++ ++V SR + LL + +P++ DA ++ E +T+N E D L +NE+VLQFLA SR C ++V+FTFQFYRFP TT RL L +L E S IL +RDG D PG ++Y V P +++ GE++ F +YL Q L ID+WDGDS+LLIGS + +K+LLRQ +PAVQ S EL+VV TEY +D+ +++GD+ G P G+ +K +L + +ANVG+ E + L S ++ + G + T + A+ ++D DSELA++LLT + GK + D R+RK++RM +VR E ++ + + + + Q RDL+ I YR++ K ++I + L +ITTEH LHA+LG EFFEF LKNP N V ++ ++ EL VI + +EWR FK L+T +EE MF +L+LR +E HVPFKFQSF++ M + P + K + + +K KV F + KP+A L LT+EL PH +DQ FRFYHPE +FLKKAIRLPP H+ PG+ V + V RCSD VICET V GEP++IFLKV G SP IK FFVI++ D + P Q WQ Y+HSLQRVD++ GQ ++LS++L+GTQ+ R V+ F SHP E+K P F+L G+Q++ + V PL AG R + LN+VD + HQLV SWL+ + C +P+I+KAFE+ G G G NK+I++TNPYP ++TF H++ +LL+F+E+ +GGGE++ I L F P Q G +L++IND + KNEE FC+KVIY
Sbjct: 55 ECHLRVSFFDVTYRHFFGRTW-KTTVKPTKRPPSR--IVFNEPLYFHTSLNHPHIVAVVEVVAEGKKRDGSLQTLSCGFGILRIFS--------NQPDSPISASQDKRLRLYHGTPRALLHPLLQDPAEQNRHMTLIENCSLQYTLKPHPALEPAFHLLPENLLVSGLQQIPGLLPAHGESG--DALRKPRLQKPITGHLDDLFFTLYPSLEKFEEELLELHVQDHFQEGCGPLDGGALEILERRLRVGVHNGLGFVQRPQVVVLVPEMDVALTRSASFSRKVVSSSKTSSGSQ--------ALVLRSRLRLPEMVGHPAFAVIFQLEYVFSSPAGVDGNAASVTSLSNLACMHM-----------VRWAVWNPLLEA--DSGRVTLPLQGGIQPNPSHCLVYKVPSASMSSEEVKQVESGTLRFQFSLGSEEHLDAPTEPVSGPKVERRPSRKPPTSPSSPPAPVPRVLAAPQNSPVGPGLSISQLAASPRSPTQHCLARPTSQLPHGSQ--ASPAQAQEFPLEAGISHLEADLSQTSLVLETSIAEQLQELPFTPLHAPIVVGTQTRSSAGQPSRASMVLLQSSGFPEILDANKQPAEAVSATEPVTFNPQKEESDCLQSNEMVLQFLAFSRVAQDCRGTSWPKTVYFTFQFYRFPPATTPRLQLVQLDEAGQPSSGALTHILVPVSRDGT-FDAGSPGFQLRYMVGPGFLKPGERRCFARYLAVQTLQIDVWDGDSLLLIGSAAVQMKHLLRQGRPAVQASHELEVVATEYEQDNMVVSGDMLGFGRVKPIGVHSVVKGRLHLTLANVGHPCEQKVRGCSTLPPSRSRVISNDGASRFSGGSLLTTGSSRRKHVVQAQKLADVDSELAAMLLTHARQ---GKGPQDVSRESDATRRRKLERMRSVRLQEAGGDLGRRGTSVLAQQSVRTQHLRDLQVIAAYRERTKAESIASLLSLAITTEHTLHATLGVAEFFEFVLKNPHNTQHTVTVEIDNPELSVIVDSQEWRDFKGAAGLHTPVEEDMFHLRGSLAPQLYLRPHETAHVPFKFQSFSAGQLA--MVQASPGLSNEKGMDAVSPWKSSAVPTKHAKVLFRASGGKPIAVLCLTVELQPHVVDQVFRFYHPELSFLKKAIRLPPWHTFPGAPVGMLGEDPP-VHVRCSDPNVICETQNVGPGEPRDIFLKVASGPSPEIKDFFVIIYSDRWLATPTQTWQVYLHSLQRVDVSCVAGQLTRLSLVLRGTQTVRKVRAFTSHPQELKTDPKGVFVLPPRGVQDLHVGVRPLRAGSRFVHLNLVDVDCHQLVASWLVCLCCRQPLISKAFEIMLAAGEGKGVNKRITYTNPYPSRRTFHLHSDHPELLRFREDSFQVGGGETYTIGLQFAPSQRVGEEEILIYINDHEDKNEEAFCVKVIY 1425 The following BLAST results are available for this feature:
BLAST of TCONS_00023672 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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