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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022993 ID=TCONS_00022993|Name=TCONS_00022993|organism=Clytia hemisphaerica|type=transcript|length=1633bp
gctggatatccaggctaagtcTATGTCTATAACAAAAGtatataaacaaa
caaacagtatAACATATTTTTGTAGAATGCCATACCGGCAGAGAAAAATT
ATAGGAAATATAAACATCCGGGGAGAAGCAAGCAACTTTATGATTGGCTT
TCAGGTAAAAATGTAGGTGCCAGAATTAAAACAGAGGTGACAACAACATT
ACAACGTCGCACGATAGTTACTATTTTGAGGGAGAACAAACTATCAGGAC
TTTACTGAAGCATTAAAGCATTATCAAAAATTGTATTCCTTGCCCTGACT
AACTAACTTGGAACAGCAGAACATGGATTCGATTATGAGCAGAGTTGAAA
TGAATATTGagatttgtttattttattctaCCAATTTCAGGGGCCTGTCT
TCCACCCAGAAAAGCGCATTTCGAAGTTGGAAATTTGAGAGCGTTCTTCA
ACAAACCATTCTTGTGCCTGACTGCCAACGCAAACAgcaaaacaacaaga
aaaattgTAAAGTTGGTCAAACTCAGGAATTACAAGGTTGAAAGATTCTC
TCCTGAGAACCAAATGTAAAGATTCACgtgcaaaaattgaaaacaactTC
AGACTTTTCTGAGGTCATGGTGTACATGAGACCTATTCTTTCTGAATTTG
ATTTGAATGGCCAATGTGAAAAAACCATCATATACTGTCATAATATTGGT
CGCTGTGGTAAGCTCTTCTTGTTGTTCGATCCAAAGTATCGTGGTAAAAC
TGTCCGGGTGTTTCATGGAAAGACTCTACCCCACCACAGGGCAGAGATCA
TGGAGGAGTTCATCAAACCATAAGGTGGTGAATGTTTTATTATTATTGCA
ACAGCTGCTCTGGGGATGGGGGTTAACATAAAGAACATCAGGCATGTTAT
TCATGTAGGGTTGCCAAAGGACGTTGAAGGATACATACAAGAGATTGGTA
GAGCTGACAGAGATGGTAAACAGAGCTCGGCAATGTTATTTTATCGTCCT
GCTTGTGACATTTCTCACTGCAAAGATGATGATTTGGTTAGggtaataaa
aaacaaagaagatGTTTGCAGAAGATTTGCCCTTTTGAAATGTTTCAACG
TTGTGCCAGATAATTCACTAGAAAAACATGAATGTTGTGACATTTGTGAT
AAATTATGTGTTTGTGAAACGTGCTCAGTAACAGTAGCTTTTGAACAAGT
TACCAATGAACTACCTGAACCTTTACCAATTATAAGATCAACcagtgaaa
aagaaaagaaagtggTGTTGGAGTGTCTAAAACAACTTAGATTGAGTAAA
GCGGGTGAAAAGCTGGTGATGGAGAATGTCGATTGTATCAAAACAGAAGG
AGATGTAATAAGTTTGGGTATTGAAGAATCTGTCATTGTCTTTGTTAGGA
GGATCTTTGAAGAAGTTTTTGATTGGGAAAACATAATAGACAATAAAAAT
GATGACAATGATGACGATAATGCTAAATCAACAGAGATTGGAACTGAAGA
CAAGACAGATTTTTGTGATAATGCTCAATTGGCAGAGGCTAGTGACTCTG
ATTTACTATCCTTGAATCAGCCATACGAGAAAgccaaagaaaattatttt
tatttcgattcgGATAATGACTTCTGGCAAGAC Run BLAST on NCBI transcript from alignment at sc0000438:161953..163585+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022993 ID=TCONS_00022993|Name=TCONS_00022993|organism=Clytia hemisphaerica|type=transcript|length=1633bp|location=Sequence derived from alignment at sc0000438:161953..163585+ (Clytia hemisphaerica)
gctggatatccaggctaagtcTATGTCTATAACAAAAGtatataaacaaa
caaacagtatAACATATTTTTGTAGAATGCCATACCGGCAGAGAAAAATT
ATAGGAAATATAAACATCCGGGGAGAAGCAAGCAACTTTATGATTGGCTT
TCAGGTAAAAATGTAGGTGCCAGAATTAAAACAGAGGTGACAACAACATT
ACAACGTCGCACGATAGTTACTATTTTGAGGGAGAACAAACTATCAGGAC
TTTACTGAAGCATTAAAGCATTATCAAAAATTGTATTCCTTGCCCTGACT
AACTAACTTGGAACAGCAGAACATGGATTCGATTATGAGCAGAGTTGAAA
TGAATATTGagatttgtttattttattctaCCAATTTCAGGGGCCTGTCT
TCCACCCAGAAAAGCGCATTTCGAAGTTGGAAATTTGAGAGCGTTCTTCA
ACAAACCATTCTTGTGCCTGACTGCCAACGCAAACAgcaaaacaacaaga
aaaattgTAAAGTTGGTCAAACTCAGGAATTACAAGGTTGAAAGATTCTC
TCCTGAGAACCAAATGTAAAGATTCACgtgcaaaaattgaaaacaactTC
AGACTTTTCTGAGGTCATGGTGTACATGAGACCTATTCTTTCTGAATTTG
ATTTGAATGGCCAATGTGAAAAAACCATCATATACTGTCATAATATTGGT
CGCTGTGGTAAGCTCTTCTTGTTGTTCGATCCAAAGTATCGTGGTAAAAC
TGTCCGGGTGTTTCATGGAAAGACTCTACCCCACCACAGGGCAGAGATCA
TGGAGGAGTTCATCAAACCATAAGGTGGTGAATGTTTTATTATTATTGCA
ACAGCTGCTCTGGGGATGGGGGTTAACATAAAGAACATCAGGCATGTTAT
TCATGTAGGGTTGCCAAAGGACGTTGAAGGATACATACAAGAGATTGGTA
GAGCTGACAGAGATGGTAAACAGAGCTCGGCAATGTTATTTTATCGTCCT
GCTTGTGACATTTCTCACTGCAAAGATGATGATTTGGTTAGggtaataaa
aaacaaagaagatGTTTGCAGAAGATTTGCCCTTTTGAAATGTTTCAACG
TTGTGCCAGATAATTCACTAGAAAAACATGAATGTTGTGACATTTGTGAT
AAATTATGTGTTTGTGAAACGTGCTCAGTAACAGTAGCTTTTGAACAAGT
TACCAATGAACTACCTGAACCTTTACCAATTATAAGATCAACcagtgaaa
aagaaaagaaagtggTGTTGGAGTGTCTAAAACAACTTAGATTGAGTAAA
GCGGGTGAAAAGCTGGTGATGGAGAATGTCGATTGTATCAAAACAGAAGG
AGATGTAATAAGTTTGGGTATTGAAGAATCTGTCATTGTCTTTGTTAGGA
GGATCTTTGAAGAAGTTTTTGATTGGGAAAACATAATAGACAATAAAAAT
GATGACAATGATGACGATAATGCTAAATCAACAGAGATTGGAACTGAAGA
CAAGACAGATTTTTGTGATAATGCTCAATTGGCAGAGGCTAGTGACTCTG
ATTTACTATCCTTGAATCAGCCATACGAGAAAgccaaagaaaattatttt
tatttcgattcgGATAATGACTTCTGGCAAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022993-exon-sc0000438-1491911889:161953..163585 | TCONS_00022993-exon-sc0000438-1491911889:161953..163585 | Clytia hemisphaerica | exon |
| TCONS_00022993-exon-sc0000438-1510915933:161953..163585 | TCONS_00022993-exon-sc0000438-1510915933:161953..163585 | Clytia hemisphaerica | exon |
| TCONS_00022993-exon-sc0000438-1575043694:161953..163585 | TCONS_00022993-exon-sc0000438-1575043694:161953..163585 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000438 | supercontig | sc0000438:161953..163585 + |
Blast
BLAST of TCONS_00022993 vs. Swiss-Prot (Human)
Match: WRN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2) HSP 1 Score: 80.1073 bits (196), Expect = 6.161e-17 Identity = 54/155 (34.84%), Postives = 77/155 (49.68%), Query Frame = 2
Query: 560 PNVKIHVQKLKTTSDFSEVMVYMRPILSEFDLNGQCEKTIIYCHN-------IGRCGKLFLLFDPKYRGKTVRVFHGKTLPHHRAEIMEEFIKP*GGECFIIIATAALGMGVNIKNIRHVIHVGLPKDVEGYIQEIGRADRDGKQSSAMLFYRPA 1003
PN+ + V++ KT + ++ ++ S ++ G TIIYC + G KL L + +H R +I F++ E +IAT A GMG+N +IR VIH G PKD+E Y QEIGRA RDG QSS + + PA
Sbjct: 733 PNLYLEVRR-KTGNILQDLQPFLVKTSSHWEFEG---PTIIYCPSRKMTQQVTGELRKLNL---------SCGTYHAGMSFSTRKDIHHRFVR---DEIQCVIATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPA 871 HSP 2 Score: 26.1794 bits (56), Expect = 6.161e-17 Identity = 15/45 (33.33%), Postives = 26/45 (57.78%), Query Frame = 3
Query: 408 RKAHFEVGNLR-AFFNKPFLCLTANANSKTTRKIVKLVKLRNYKV 539
R + ++G+L+ A P + LTA A+S IV+ + LRN ++
Sbjct: 681 RDSFRKLGSLKTALPMVPIVALTATASSSIREDIVRCLNLRNPQI 725
The following BLAST results are available for this feature:
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