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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022855 ID=TCONS_00022855|Name=TCONS_00022855|organism=Clytia hemisphaerica|type=transcript|length=1809bpRun BLAST on NCBI protein sequence of TCONS_00022855-protein >TCONS_00022855-protein ID=TCONS_00022855-protein|Name=TCONS_00022855-protein|organism=Clytia hemisphaerica|type=polypeptide|length=538bp MLVTFILILSLGLLHGKECPVRFERKGCIKTNRVVYHTQIANNRDSNSAVRun BLAST on NCBI transcript from alignment at sc0000435:257762..263877+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022855 ID=TCONS_00022855|Name=TCONS_00022855|organism=Clytia hemisphaerica|type=transcript|length=6116bp|location=Sequence derived from alignment at sc0000435:257762..263877+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000435:257762..263877+ >TCONS_00022855 ID=TCONS_00022855|Name=TCONS_00022855|organism=Clytia hemisphaerica|type=CDS|length=14553bp|location=Sequence derived from alignment at sc0000435:257762..263877+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022855 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 262.307 bits (669), Expect = 4.278e-74 Identity = 129/284 (45.42%), Postives = 180/284 (63.38%), Query Frame = 2
Query: 572 VDGEWGSWNSFTKCSKSCGRGFQIRSRSCTNPPPKNGGKGCQGPATKSQVCNVNACPINGKWGNWTSFGACSKSCGRGFQIRSRSCNNPPPKDGGKDCVGPASDNRACNAQNCPVDGKWGNWTSFGPCTKSCEGGFKIRSRACNNPPPKYGGKDCVGDSVQNRTCNVQNCPVDGKWGNWTXXXXXXXXXXXXXQIRSRACNNPIPKYGGKDCQGMFKENRTCNTQNCPVNGGWGTWSLYGLCNKNCGGGTQQRSRTCNNPAPKYGGIKCPGVATDNRACNTQSC 1423
VDG W W+ + +C++SCGRG Q R+R+C NP ++GG+ C+G A + +CN+ CP++G W W +G CS+SCG+G Q R+R CNNPPP GG C G + + CN +NCP+ GKW W S+ C+ SC GG + R+R C++P P+YGG+ C G VQ+ CN CP G W W+ +G+CS++C GG R R C+NP P GG+ C G + + CNT CPV+G WG+W + C+ +CGGG + R R C++P P GG CPG T CN Q+C
Sbjct: 4585 VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868 HSP 2 Score: 250.751 bits (639), Expect = 3.572e-70 Identity = 133/314 (42.36%), Postives = 189/314 (60.19%), Query Frame = 2
Query: 488 DFKKCDSTHKLCIGG--IGTQYVYHIGDQTVDGEWGSWNSFTKCSKSCGRGFQIRSRSCTNPPPKNGGKGCQGPATKSQVCNVNACPINGKWGNWTSFGACSKSCGRGFQIRSRSCNNPPPKDGGKDCVGPASDNRACNAQNCPVDGKWGNWTSFGPCTKSCEGGFKIRSRACNNPPPKYGGKDCVGDSVQNRTCNVQNCPVDGKWGNWTXXXXXXXXXXXXXQIRSRACNNPIPKYGGKDCQGMFKENRTCNTQNCPVNGGWGTWSLYGLCNKNCGGGTQQRSRTCNNPAPKYGGIKCPGVATDNRACNTQSC 1423
D +K D++ C+ +G+ V V G + W+++ CS +CG+G Q RSR C P P NGGK CQG + + C CP++G W W+ + C++SCGRG Q R+R+CNNP + GG+ C G A + CN + CPV G W W +G C++SC G + R+R CNNPPP +GG C G Q + CN +NCP+ GKW W S+ +CS SCGGG + R+R C++P+P+YGG+ C+G ++ CN+ CP +G W WS +G C++ C GG +R RTC+NP P GG C G + + CNT C
Sbjct: 4498 DAQKEDTSEFECVARNLMGSVLVRVPVIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC 4811 HSP 3 Score: 202.216 bits (513), Expect = 4.992e-54 Identity = 107/228 (46.93%), Postives = 139/228 (60.96%), Query Frame = 2
Query: 572 VDGEWGSWNSFTKCSKSCGRGFQIRSRSCTNPPPKNGGKGCQGPATKSQVCNVNACPINGKWGNWTSFGACSKSCGRGFQIRSRSCNNPPPKDGGKDCVGPASDNRACNAQNCPVDGKWGNWTSFGPCTKSCEGGFKIRSRACNNPPPKYGGKDCVGDSVQNRTCNVQNCPVDGKWGNWTXXXXXXXXXXXXXQIRSRACNNPIPKYGGKDCQGMFKENRTCNTQNCP 1255
V G W +W + CS+SCG+G Q R+R C NPPP GG C G T+ QVCN CPI+GKW W S+ ACS SCG G + R+R C++P P+ GG+ C G + CN+ CP G W W+ +G C+++C GG R R C+NPPP GG+ C G Q + CN CPVDG WG+W S+ CS SCGGG + R R C++P+P GG+ C G + CN Q CP
Sbjct: 4642 VHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 The following BLAST results are available for this feature:
BLAST of TCONS_00022855 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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