TCONS_00022855-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00022855-protein
Unique Name	TCONS_00022855-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	538

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00022855-protein ID=TCONS_00022855-protein|Name=TCONS_00022855-protein|organism=Clytia hemisphaerica|type=polypeptide|length=538bp
MLVTFILILSLGLLHGKECPVRFERKGCIKTNRVVYHTQIANNRDSNSAV
FTGKQVNWSNYKDSLQELACECAKRALQHGVAFALGSFAECWIATNEKNF
NMSLANPWQKSDRCIGHDFKKCDSTHKLCIGGIGTQYVYHIGDQTVDGEW
GSWNSFTKCSKSCGRGFQIRSRSCTNPPPKNGGKGCQGPATKSQVCNVNA
CPINGKWGNWTSFGACSKSCGRGFQIRSRSCNNPPPKDGGKDCVGPASDN
RACNAQNCPVDGKWGNWTSFGPCTKSCEGGFKIRSRACNNPPPKYGGKDC
VGDSVQNRTCNVQNCPVDGKWGNWTSFGSCSKSCGGGFQIRSRACNNPIP
KYGGKDCQGMFKENRTCNTQNCPVNGGWGTWSLYGLCNKNCGGGTQQRSR
TCNNPAPKYGGIKCPGVATDNRACNTQSCWSSYYEVNLCNGNSKMIKCPK
VTQLIRLADYFYGRQSSTVCSTSGSSGWWHGDNVRCRGGQTAIRNSCEGK
NSCSISATDTVMGGYPCRTGQNTFRTKPYAYVKYRCYG

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_012846	XLOC_012846	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00022855	TCONS_00022855	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000884	TSP1_rpt
IPR000922	Lectin_gal-bd_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0030246	carbohydrate binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0030246	carbohydrate binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01705	TSP1REPEAT	coord: 394..405 score: 48.59 coord: 319..332 score: 38.14 coord: 413..424 score: 31.99
IPR000884	Thrombospondin type-1 (TSP1) repeat	SMART	SM00209	TSP1_2	coord: 378..430 e-value: 4.3E-10 score: 49.5 coord: 150..202 e-value: 9.8E-15 score: 65.0 coord: 207..259 e-value: 1.9E-15 score: 67.3 coord: 264..316 e-value: 5.4E-14 score: 62.5 coord: 321..373 e-value: 2.0E-16 score: 70.6
IPR000884	Thrombospondin type-1 (TSP1) repeat	GENE3D	2.20.100.10		coord: 374..429 e-value: 7.8E-16 score: 57.6 coord: 203..258 e-value: 6.3E-17 score: 61.1 coord: 260..315 e-value: 5.0E-16 score: 58.2 coord: 146..201 e-value: 1.4E-16 score: 60.0 coord: 317..372 e-value: 1.9E-17 score: 62.8
IPR000884	Thrombospondin type-1 (TSP1) repeat	PFAM	PF00090	TSP_1	coord: 322..372 e-value: 7.5E-10 score: 38.8 coord: 208..258 e-value: 1.8E-11 score: 44.0 coord: 152..201 e-value: 9.6E-9 score: 35.2 coord: 380..429 e-value: 4.6E-9 score: 36.3 coord: 265..315 e-value: 2.9E-10 score: 40.1
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 147..202 score: 13.771
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 204..259 score: 13.815
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 318..373 score: 13.65
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 375..430 score: 11.897
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 261..316 score: 13.592
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 374..427
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 201..258
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 146..198
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 260..313
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 315..372
IPR000922	D-galactoside/L-rhamnose binding SUEL lectin domain	PFAM	PF02140	Gal_Lectin	coord: 446..521 e-value: 3.7E-8 score: 33.6

Blast

[Close]

BLAST of TCONS_00022855-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 283.108 bits (723), Expect = 2.655e-83
Identity = 129/284 (45.42%), Postives = 180/284 (63.38%), Query Frame = 0

Query:  146 VDGEWGSWNSFTKCSKSCGRGFQIRSRSCTNPPPKNGGKGCQGPATKSQVCNVNACPINGKWGNWTSFGACSKSCGRGFQIRSRSCNNPPPKDGGKDCVGPASDNRACNAQNCPVDGKWGNWTSFGPCTKSCEGGFKIRSRACNNPPPKYGGKDCVGDSVQNRTCNVQNCPVDGKWGNWTSFGSCSKSCGGGFQIRSRACNNPIPKYGGKDCQGMFKENRTCNTQNCPVNGGWGTWSLYGLCNKNCGGGTQQRSRTCNNPAPKYGGIKCPGVATDNRACNTQSC 429
            VDG W  W+ + +C++SCGRG Q R+R+C NP  ++GG+ C+G A +  +CN+  CP++G W  W  +G CS+SCG+G Q R+R CNNPPP  GG  C G  +  + CN +NCP+ GKW  W S+  C+ SC GG + R+R C++P P+YGG+ C G  VQ+  CN   CP  G W  W+ +G+CS++C GG   R R C+NP P  GG+ C G   + + CNT  CPV+G WG+W  +  C+ +CGGG + R R C++P P  GG  CPG  T    CN Q+C
Sbjct: 4585 VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868

HSP 2 Score: 272.707 bits (696), Expect = 1.056e-79
Identity = 133/314 (42.36%), Postives = 189/314 (60.19%), Query Frame = 0

Query:  118 DFKKCDSTHKLCIGG--IGTQYVYHIGDQTVDGEWGSWNSFTKCSKSCGRGFQIRSRSCTNPPPKNGGKGCQGPATKSQVCNVNACPINGKWGNWTSFGACSKSCGRGFQIRSRSCNNPPPKDGGKDCVGPASDNRACNAQNCPVDGKWGNWTSFGPCTKSCEGGFKIRSRACNNPPPKYGGKDCVGDSVQNRTCNVQNCPVDGKWGNWTSFGSCSKSCGGGFQIRSRACNNPIPKYGGKDCQGMFKENRTCNTQNCPVNGGWGTWSLYGLCNKNCGGGTQQRSRTCNNPAPKYGGIKCPGVATDNRACNTQSC 429
            D +K D++   C+    +G+  V       V G +  W+++  CS +CG+G Q RSR C  P P NGGK CQG   + + C    CP++G W  W+ +  C++SCGRG Q R+R+CNNP  + GG+ C G A +   CN + CPV G W  W  +G C++SC  G + R+R CNNPPP +GG  C G   Q + CN +NCP+ GKW  W S+ +CS SCGGG + R+R C++P+P+YGG+ C+G   ++  CN+  CP +G W  WS +G C++ C GG  +R RTC+NP P  GG  C G  +  + CNT  C
Sbjct: 4498 DAQKEDTSEFECVARNLMGSVLVRVPVIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC 4811

HSP 3 Score: 223.402 bits (568), Expect = 8.651e-63
Identity = 107/228 (46.93%), Postives = 139/228 (60.96%), Query Frame = 0

Query:  146 VDGEWGSWNSFTKCSKSCGRGFQIRSRSCTNPPPKNGGKGCQGPATKSQVCNVNACPINGKWGNWTSFGACSKSCGRGFQIRSRSCNNPPPKDGGKDCVGPASDNRACNAQNCPVDGKWGNWTSFGPCTKSCEGGFKIRSRACNNPPPKYGGKDCVGDSVQNRTCNVQNCPVDGKWGNWTSFGSCSKSCGGGFQIRSRACNNPIPKYGGKDCQGMFKENRTCNTQNCP 373
            V G W +W  +  CS+SCG+G Q R+R C NPPP  GG  C G  T+ QVCN   CPI+GKW  W S+ ACS SCG G + R+R C++P P+ GG+ C G    +  CN+  CP  G W  W+ +G C+++C GG   R R C+NPPP  GG+ C G   Q + CN   CPVDG WG+W S+  CS SCGGG + R R C++P+P  GG+ C G   +   CN Q CP
Sbjct: 4642 VHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869

The following BLAST results are available for this feature:

BLAST of TCONS_00022855-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00022855-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HMCN1	2.655e-83	45.42	Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2	[more]

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TCONS_00022855-protein (polypeptide) - C. hemisphaerica