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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022854 ID=TCONS_00022854|Name=TCONS_00022854|organism=Clytia hemisphaerica|type=transcript|length=680bp
CTGGTTCAGTACAGAACATTGATGGTgaaatgaaaactaaaaatgtatAT
AAAAGGTTGTTACTTTTACTTTTTCGTTTAATCTGCACTCACATGTCAGA
AGAGCAcacgaagaaaaaataaaaaaatctagaaaCATGTTAGTTACATT
TATTTTGATCCTATCATTGGGGTTGCTGCACGGGAAAGAGTGCCCGGTTC
GATTCGAAAGAAAAGGATGCATCAAGACAAACCGAGTTGTCTATCACACA
CAAATTGCAAATAACAGAGATTCCAACAGTGCCGTTTTTACTGGAAAGCA
GGTCAACTGGTCAAACTATAAAGACTCCCTTCAAGAGTTAGCCTGTGAAT
GTGCAAAGAGAGCGTTACAACATGGCGTTGCTTTTGCTTTGGGAAGTTTC
GCAGAATGCTGGATAGCTACCAACGAGAAAAACTTTAATATGAGTTTAGC
AAATCCTTGGCAAAAATCTGATCGTTGCATAGGACATGATTTCAAGAAGT
GCGATTCTACACACAAACTTTGTATTGGTGGAATCGGAACGCAGTATGTT
TATCACATTGGAGATCAAACGGTTGATGGTGAATGGGGAAGCTGGAATTC
CTTCACAAAATGCAGTAAAAGTTGTGGTAGGGGATTTCAGATTCGTTCAA
GATCTTGCAATAACCCACCACCAAAANAAG Run BLAST on NCBI transcript from alignment at sc0000435:257762..260347+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022854 ID=TCONS_00022854|Name=TCONS_00022854|organism=Clytia hemisphaerica|type=transcript|length=2586bp|location=Sequence derived from alignment at sc0000435:257762..260347+ (Clytia hemisphaerica)
CTGGTTCAGTACAGAACATTGATGGTgaaatgaaaactaaaaatgtatAT
AAAAGGTTGTTACTTTTACTTTTTCGTTTAATCTGCACTCACATGTCAGA
AGAGCAcacgaagaaaaaataaaaaaatctagaaaCATGTTAGTTACATT
TATTTTGATCCTATCATTGGGGTTGCTGCACGGGAAAGGTAATTAAGATA
GATTTTTGTGTGTTTATATCCCTGATATATTTTGCAAATAAGGTATTATA
ATGTTGGGAGATCCAGTCATTTCTACTAAACATTCGTAGCGAGATTCCTG
AGcttttaaggcttggggacacgagaagtttttttcgcattggtgcaatg
caacatgctctatccctCCCACCTGTAACGCTTTTTTGTGTCtacacccc
atttttctttctgccaaaaaaagtgaaaatcactttttgtcccatgaaac
aaaaaaagaaaccggaacacacacttttttcttgtgttggtgggaaaGAG
CATGTTGCAATGCACCaatgcgaaaaaaacttctcgtgtccccaagcctt
aaaagctcaaaatcatCTATTCGGCAAATAGGAACTTCGGCTttccaata
gaccttatcggagtttacgatttttctaaaaaagtgatgcattgtgtgat
tgttttgagtgtattacaatagaattccctcgaggaattcctaagagatt
tctattgcaATACACtcaaacaatcccacaatgcatcgcttttttagaaa
aatcgaaaactccgataaggtctattatctCTCTGTTAGTACATGAATAA
AAATATTGTGCACCTTGTACAATGAAATAAAGGCTACCACCTTATTCTTA
ATAATTTTCAGAGTGCCCGGTTCGATTCGAAAGAAAAGGATGCATCAAGA
CAAACCGAGTTGTCTATCACACACAAATTGCAAATAACAGAGATTCCAAC
AGTGCCGTTTTTACTGGAAAGCAGGTCAACTGGTCAAACTATAAAGACTC
CCTTCAAGAGTAagaaagtacacgtttttttataagaacaaactatataa
gaacataaggcttcgctagctaaaatgttaagaacaacttaagaacattt
taagattttggactcaaaaacactattatttaggaaaatggtcaaaaata
ttcacaaaatgatcaaaataagaacacgtcgagaacatttttaggcttaa
aactcaaaaagttaagaacattcgaaggcttcaaaaattttggatgtttt
tatataaaaacgtgtattattaCTACCGCCGAAAAGTAATTTTGGAATTA
TCTTCACattctattatttttcaaaaccccGTGTAACctccattttttcc
aatatttgacAGTCTAACCCTGTCGATttaaaatagttttcaaaatgttA
CACCGTTGCTGGAGTTAATAAAATAAGTCAACGATCGctaaggcgaggcc
aatttaatttgttgttttacggatcaagctacccaaaaaaagagggtcgg
tcggccggcgaaaaagtaaaataaaagtaaaatttcacctataaaatgtc
ctaaaaaggcagcaaaaactgccacatattgacaaaaatgtgaaaaagaa
aataaaaagacacaaaaagcttgAATTCATggattaaatgaaaaattaaa
aatgaaattctcaaaacttggGAAAACTgccaaaatcttttcaaaatgtt
aaacTGTTGCAGGAGTTAATGAAATAAGCCAACGATAGCTAAACAAATAT
TCATTTATTCTACTGACAAAGTGACTTCGTTTTTTCTACTAAGGTTAGCC
TGTGAATGTGCAAAGAGAGCGTTACAACATGGCGTTGCTTTTGCTTTGGG
AAGTTTCGCAGAATGCTGGATAGCTACCAACGAGAAAAACTTTAATATGA
GTTTAGCAAATCCTTGGCAAAAATCTGATCGTTGCATAGGACATGATTTC
AAGAAGTGCGATTCTACACACAAACTTTGTATTGGTGGAATCGGAACGCA
GTATGTTTATCACATTGGAGATCAAACGGGTATGCTTTATTGATTGTTtt
ttcagatgagatggagtttaataattggtcatttgaagtgataaaaatga
cgcgatctttagaaaaagtaacaaaattactggttaacgaccaaccaaat
aaaataagagcttgtaaaaactccatcttgtcactttttttttgcaattt
cgaGGATTTCGAAAGAAGAAATTAGCTTCTCTTGTTACGCATGGCCTATT
TAATTACCATATTGTTCCTTCATTTTCTATCACAATTAAGTTAGATCTGT
AAGTTAGAacatcctctatacgataaaaaaaataatcaatgaaaaataaa
aatcctgaagctcacaatatctcccgacaaacctgtatactttttttggt
gcacccggtagatgTACATACTACTTACACTACATACTATCACTTACAGT
GACATTTTCTGTTCAACTTACTTCATAGTTGATGGTGAATGGGGAAGCTG
GAATTCCTTCACAAAATGCAGTAAAAGTTGTGGTAGGGGATTTCAGATTC
GTTCAAGATCTTGCAATAACCCACCACCAAAANAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022854-exon-sc0000435-1491911889:257762..257949 | TCONS_00022854-exon-sc0000435-1491911889:257762..257949 | Clytia hemisphaerica | exon |
| TCONS_00022854-exon-sc0000435-1510915933:257762..257949 | TCONS_00022854-exon-sc0000435-1510915933:257762..257949 | Clytia hemisphaerica | exon |
| TCONS_00022854-exon-sc0000435-1575043694:257762..257949 | TCONS_00022854-exon-sc0000435-1575043694:257762..257949 | Clytia hemisphaerica | exon |
| TCONS_00022854-exon-sc0000435-1491911889:258623..258770 | TCONS_00022854-exon-sc0000435-1491911889:258623..258770 | Clytia hemisphaerica | exon |
| TCONS_00022854-exon-sc0000435-1510915933:258623..258770 | TCONS_00022854-exon-sc0000435-1510915933:258623..258770 | Clytia hemisphaerica | exon |
| TCONS_00022854-exon-sc0000435-1575043694:258623..258770 | TCONS_00022854-exon-sc0000435-1575043694:258623..258770 | Clytia hemisphaerica | exon |
| TCONS_00022854-exon-sc0000435-1491911889:259555..259790 | TCONS_00022854-exon-sc0000435-1491911889:259555..259790 | Clytia hemisphaerica | exon |
| TCONS_00022854-exon-sc0000435-1510915933:259555..259790 | TCONS_00022854-exon-sc0000435-1510915933:259555..259790 | Clytia hemisphaerica | exon |
| TCONS_00022854-exon-sc0000435-1575043694:259555..259790 | TCONS_00022854-exon-sc0000435-1575043694:259555..259790 | Clytia hemisphaerica | exon |
| TCONS_00022854-exon-sc0000435-1491911889:260240..260347 | TCONS_00022854-exon-sc0000435-1491911889:260240..260347 | Clytia hemisphaerica | exon |
| TCONS_00022854-exon-sc0000435-1510915933:260240..260347 | TCONS_00022854-exon-sc0000435-1510915933:260240..260347 | Clytia hemisphaerica | exon |
| TCONS_00022854-exon-sc0000435-1575043694:260240..260347 | TCONS_00022854-exon-sc0000435-1575043694:260240..260347 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000435 | supercontig | sc0000435:257762..260347 + |
Blast
The following BLAST results are available for this feature:
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