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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022826 ID=TCONS_00022826|Name=TCONS_00022826|organism=Clytia hemisphaerica|type=transcript|length=3061bp
ACAAATTTGACGATGATGGGatTGCGAGACACATGCAAGGACTTGTTCAG
TAATTTCAACTACATGTCAAGCGAGTCATCAAAAATCTCTTGCTCACCTC
AATGTCGACGACGTCTCATCAACGCAAAGAAACATTATCAGTTGAAAACC
CTCTTAACgtgcaaaacaaagaaaagttattttttcccTTACCAAGAGCG
AGCTGAACGATGCATTGCTGGTAAAATCGATGCTAAAGTCCACGAAAATT
TTGTCCAAGATGGTTGTTCCAATGTTTTTCAAGATTGTATGAAATTTCAC
CGGTGCCGTAAGCGTTACCAGCGAATGATGTTTGAATGTTCTGAAATGGT
AAACGGACAGAAATGCACAACAACGTGTGAAAAGAGCctaaagaaatttt
tagtcTCTCAACACATTTCAGGATTCTATCAATGTCGGTGTGATGGTGCC
ATCTATTTTCAACAGACTTGCCATTCCTTGAAACAGAACATTTTGAATTT
GTGtgtttcaaatcaattcaaagGATTTTTGAGTAAAAGAGAATTATTAC
TAATCAAATGAATATAAAGTAGAACACACCCTAATTGAGTATAAAATCAC
TGATATCCATTTATCCTGGGTACAGTTTTCGataaagtggtaccctaatg
gtaacACTACTCAATGTGGGTGGAAAAGATTTGAACGGAAAATTTCATTT
AGTTATAAATTGACCAACATTGAGTAGAGCCACAACAGTTAGGGTGCCAC
TTTTCTAAGAATTCTAACTAAAGATCGCGGATTTAGTCCAAGGCTTTTAA
AAATCAGCATAAATGACACACcttaattcgaacctctgttattctctaat
tcgattagATTCGAAATCTAACGATAGACCTCTTAGCAAGAAAAGAATTA
CGTGAAACTCTCTTCGTAATTCGAGGTTCTGAAGCGAAAAATCGCCTTCT
TACTACTGACGATCCAATTACAGTGAACTTTACATTTTACAAGCAAACAA
ATAgatgacaaaaaataaaaaataaagtatttatacCTTAACAAATACAG
GCACCATATATTAGTTTCCAGAACTGCGTCATTAGGTTATCAGTGTTTCT
TGAcagcaatttttattcaatattatttatttttgctttatttttctaac
actaaaaatataaagaacatGTAAACCATTTTTAATCTTTAAATTCAAAC
TTTCGTTCGGCTCGAGATTCTCTTTGATACACAGTGCTTTAAGGCCAAAA
ATTCAGACACTTCCAAGTGGTGAAagcttatttttttctcaagtttAAAT
TAGTGTCTGTTGCAAACAATAAAAAGCAATATAAATTTGATGAAACttta
ttattttggacaattgttccttattttttgataatTCATTCATATAAAAA
CCTATAAAGACTTTAATAAATTTATAATATTCTATAATATATGACTAATT
TTACCCTTGAATTTTTGAcataattcttaaaaaaatattaaaatgagaat
tttcttTATAGTTACTGTACAGAGCAACcatgtaaatatacaaaatatga
atttatacttttttgaaaacttgaacTTGGCTCAtttcaaataccgtaat
acttTGAATAAACACCCCTCAATTAAGCGCCCCTCAACTAAGCGCCCCTC
CTTAAAACCAAATAAAGTTTATAAACGCccagggcgtttattcgaagtac
gGTATGTACTTAGAATTTTCATATCTTCCTGAGACCAATTGAAAGGACCC
TCCAAAGTAAGCTAAGAAAAGCAAAAGGtgtaaaaattgatttaaaaaat
gaactagaattcttttgataaaaaacgtGATAAAAGTTATCAAAATTTAT
GTACAAGAACCACGGGTATATGCATAGAGGTGCGTGGCCTCCTCCCTTTT
TTTGCAGACTAATTTTTATAAACCTTAAAAGCTTATGTTTTTATCTTATT
AAACGTTTTAGGGTGTTCAGAATGTgctaaaagtaaaatatttgcTTCGT
GACAAACTAAGGTGGGCGAAAATTTTGCCATTCCCACCTCGAATGGGACC
ATTTTACTTTCCATCTATGCTTCATTGCTGTTCGTTTCTCTTTTTCACTC
TGCAACCCAATGTGTGGCAAGGCAAAGAGACCCTATGCAAGTAGGTAGAG
TTTGATCGCAGATAAAAAAGTGTAGCTTAAAACTTAACATAAACTGAGCT
CATAGAACAATTAGAtttataatcgcacgatgagctattttttcttattt
ggcgcgccttcaaagagagcaattaatcgttaattgcatcctttagagag
caattaatcgttaatcacactcttcaatgcagcgccaattttacaaaatt
gattttaatgttttttcttatattcttttttcatcgaacgttttaattgc
attcgaaattagttttgtgagaaagaaaatctataaacaacaaTATATGG
Tttggtaatcgtcagtaaataatcattagtaaatcatagtttttgtttaa
aaagaaaacattgcagtgtaatttttcttttcgtttttatattgaagaaa
aaaaatgtctttgttttttattatatagtaaaaaagtctctgacacagga
tttgggagagaaaagaataaggggacaaaagtgtccccccgccgaagagt
gcaaaaagtggtaatagtgcaattaacgattaatcgcactcctctaaacc
aatcagattcgagtaattttgcacggctgacgattacataATATACTAAT
TAAAAATCATTTTGGACGCTGAAAAAGCTGAAGCaattatttcaaacaaa
aatatcgCATTCGATtaataattgtacaaaatatGGACCAACAatatttc
tccaaaaatgaagactcgACGTTCAAAACAACATTTAACTATGAATTAGT
TTTGTTCCAGCCCAGTTTTTCGAGCACCATTCTGATAGCTTTATCGTCAC
CAAGCCTTTTCTTTAAAGAGTCCTGTAAGAAAGAAGAAACATCCTTGAAT
AGTAGTAGTAGATTGGAATCGTTTATAAGTCTACGTGTAATAAATTAATA
ACatcgttata Run BLAST on NCBI transcript from alignment at sc0000434:64905..69371- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022826 ID=TCONS_00022826|Name=TCONS_00022826|organism=Clytia hemisphaerica|type=transcript|length=4467bp|location=Sequence derived from alignment at sc0000434:64905..69371- (Clytia hemisphaerica)
ACAAATTTGACGATGATGGGGTAGGACTTAGTATGTGTGAGAGCAAGAGA
GTAAATGAGCAAGCGAGTGATTTGATGGATGAACGAGCGATATTGGATTT
ATTTAGTTCTTTCTCTTTCGTCTTACGAATATAATTTGATGAATTATCAG
AGTGAAATGACGAGTGCACGCATAGGCGAGTGAGTGAGTGAGTGCGTGAG
TGAGAGAGTTGTTGACACTATCTAATTCGACGTTCTACTAAACGATCACG
CTCCATTATTCGATGATACTGAAAGTCGCCATCAACAAAAACTTTCATAA
ACGACGCTTTACTATTCGATGAAAATGCAATTCCCCTTGAAAATTGAATC
AGAGAGCGTCAACGGTACTTATTGATCGATCGATTTTCTTTTTTTACAGA
TTGCGAGACACATGCAAGGACTTGTTCAGTAATTTCAACTACATGTCAAG
CGAGTCATCAAAAATCTCTTGCTCACCTCAATGTCGACGACGTCTCATCA
ACGCAAAGAAACATTATCAGTTGAAAACCCTCTTAACGTGCAAAACAAAG
AAAAGTTATTTTTTCCCTTACCAAGAGCGAGCTGAACGATGCATTGCTGG
TAAAATCGATGCTAAAGTCCACGAAAATTTTGTCCAAGATGGTTGTTCCA
ATGTTTTTCAAGATTGTATGAAATTTCACCGGTGCCGTAAGCGTTACCAG
CGAATGATGTTTGAATGTTCTGAAATGGTAAACGGACAGAAATGCACAAC
AACGTGTGAAAAGAGCCTAAAGAAATTTTTAGTCTCTCAACACATTTCAG
GATTCTATCAATGTCGGTGTGATGGTGCCATCTATTTTCAACAGACTTGC
CATTCCTTGAAACAGAACATTTTGAATTTGTGTGTTTCAAATCAATTCAA
AGGATTTTTGAGTAAAAGAGAATTATTACTAATCAAATGAATATAAAGTA
GAACACACCCTAATTGAGTATAAAATCACTGATATCCATTTATCCTGGGT
ACAGTTTTCGATAAAGTGGTACCCTAATGGTAACACTACTCAATGTGGGT
GGAAAAGATTTGAACGGAAAATTTCATTTAGTTATAAATTGACCAACATT
GAGTAGAGCCACAACAGTTAGGGTGCCACTTTTCTAAGAATTCTAACTAA
AGATCGCGGATTTAGTCCAAGGCTTTTAAAAATCAGCATAAATGACACAC
CTTAATTCGAACCTCTGTTATTCTCTAATTCGATTAGATTCGAAATCTAA
CGATAGACCTCTTAGCAAGAAAAGAATTACGTGAAACTCTCTTCGTAATT
CGAGGTTCTGAAGCGAAAAATCGCCTTCTTACTACTGACGATCCAATTAC
AGTGAACTTTACATTTTACAAGCAAACAAATAGATGACAAAAAATAAAAA
ATAAAGTATTTATACCTTAACAAATACAGGCACCATATATTAGTTTCCAG
AACTGCGTCATTAGGTTATCAGTGTTTCTTGACAGCAATTTTTATTCAAT
ATTATTTATTTTTGCTTTATTTTTCTAACACTAAAAATATAAAGAACATG
TAAACCATTTTTAATCTTTAAATTCAAACTTTCGTTCGGCTCGAGATTCT
CTTTGATACACAGTGCTTTAAGGCCAAAAATTCAGACACTTCCAAGTGGT
GAAAGCTTATTTTTTTCTCAAGTTTAAATTAGTGTCTGTTGCAAACAATA
AAAAGCAATATAAATTTGATGAAACTTTATTATTTTGGACAATTGTTCCT
TATTTTTTGATAATTCATTCATATAAAAACCTATAAAGACTTTAATAAAT
TTATAATATTCTATAATATATGACTAATTTTACCCTTGAATTTTTGACAT
AATTCTTAAAAAAATATTAAAATGAGAATTTTCTTTATAGTTACTGTACA
GAGCAACCATGTAAATATACAAAATATGAATTTATACTTTTTTGAAAACT
TGAACTTGGCTCATTTCAAATACCGTAATACTTTGAATAAACACCCCTCA
ATTAAGCGCCCCTCAACTAAGCGCCCCTCCTTAAAACCAAATAAAGTTTA
TAAACGCCCAGGGCGTTTATTCGAAGTACGGTATGTACTTAGAATTTTCA
TATCTTCCTGAGACCAATTGAAAGGACCCTCCAAAGTAAGCTAAGAAAAG
CAAAAGGTGTAAAAATTGATTTAAAAAATGAACTAGAATTCTTTTGATAA
AAAACGTGATAAAAGTTATCAAAATTTATGTACAAGAACCACGGGTATAT
GCATAGAGGTGCGTGGCCTCCTCCCTTTTTTTGCAGACTAATTTTTATAA
ACCTTAAAAGCTTATGTTTTTATCTTATTAAACGTTTTAGGGTGTTCAGA
ATGTGCTAAAAGTAAAATATTTGCTTCGTGACAAACTAAGGTTAGGGACC
GCAATGGTTTTTTCAAATTGTTTTTAGCGCATTGAAACCATGCTCATTGG
AAAGAGCATCAAAAAAGAAAAAAAATGAGGGGTCATTCATCAAAATCGGC
CAAGCCGTTCTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNCCAAGCCGTTCTCGAGATATGAAATTTTCTATC
TCCTGAAAATGACCCTTTCTTTGGAACGATTTTCGAGGATTTTTGGAAAA
ATCATGGTTAAATAGGTGTAAAAGTGAAAATCCGGGGGTTATGTCGAAAA
ATACATTTTTTGCAATAACTTTACTTCTAATGCTATAGCATTGAAACTTG
GCACGAAGGTTTTCAAGACAAAGTTTTAATTTTTTATCAATTTTTTTTTT
CAAATTTTTCGTTTGCCGTACGAATGAATCGAAAATATCCTGTATGCCGG
AGAGCTGGCAGATTGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAACTTTTACAGGACATTTAT
TTAATGATAAGAATGCTTCTAAAACTTATCCCATGGTTATAGGTGGTCTA
AAACCTAAAAACAACATTTTGGTCGATTCCAGCCATTTTACCCCCGTCTT
TCGCGGTCCCTACTAAGGTGGGCGAAAATTTTGCCATTCCCACCTCGAAT
GGGACCATTTTACTTTCCATCTATGCTTCATTGCTGTTCGTTTCTCTTTT
TCACTCTGCAACCCAATGTGTGGCAAGGCAAAGAGACCCTATGCAAGTAG
GTAGAGTTTGATCGCAGATAAAAAAGTGTAGCTTAAAACTTAACATAAAC
TGAGCTCATAGAACAATTAGATTTATAATCGCACGATGAGCTATTTTTTC
TTATTTGGCGCGCCTTCAAAGAGAGCAATTAATCGTTAATTGCATCCTTT
AGAGAGCAATTAATCGTTAATCACACTCTTCAATGCAGCGCCAATTTTAC
AAAATTGATTTTAATGTTTTTTCTTATATTCTTTTTTCATCGAACGTTTT
AATTGCATTCGAAATTAGTTTTGTGAGAAAGAAAATCTATAAACAACAAT
ATATGGTTTGGTAATCGTCAGTAAATAATCATTAGTAAATCATAGTTTTT
GTTTAAAAAGAAAACATTGCAGTGTAATTTTTCTTTTCGTTTTTATATTG
AAGAAAAAAAATGTCTTTGTTTTTTATTATATAGTAAAAAAGTCTCTGAC
ACAGGATTTGGGAGAGAAAAGAATAAGGGGACAAAAGTGTCCCCCCGCCG
AAGAGTGCAAAAAGTGGTAATAGTGCAATTAACGATTAATCGCACTCCTC
TAAACCAATCAGATTCGAGTAATTTTGCACGGCTGACGATTACATAATAT
ACTAATTAAAAATCATTTTGGACGCTGAAAAAGCTGAAGCAATTATTTCA
AACAAAAATATCGCATTCGATTAATAATTGTACAAAATATGGACCAACAA
TATTTCTCCAAAAATGAAGACTCGACGTTCAAAACAACATTTAACTATGA
ATTAGTTTTGTTCCAGCCCAGTTTTTCGAGCACCATTCTGATAGCTTTAT
CGTCACCAAGCCTTTTCTTTAAAGAGTCCTGTAAGAAAGAAGAAACATCC
TTGAATAGTAGTAGTAGATTGGAATCGTTTATAAGTCTACGTGTAATAAA
TTAATAACATCGTTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022826-exon-sc0000434-1575043694:69352..69371 | TCONS_00022826-exon-sc0000434-1575043694:69352..69371 | Clytia hemisphaerica | exon |
| TCONS_00022826-exon-sc0000434-1575043694:66982..68972 | TCONS_00022826-exon-sc0000434-1575043694:66982..68972 | Clytia hemisphaerica | exon |
| TCONS_00022826-exon-sc0000434-1575043694:64905..65954 | TCONS_00022826-exon-sc0000434-1575043694:64905..65954 | Clytia hemisphaerica | exon |
| TCONS_00022826-exon-sc0000434-1510915933:69352..69371 | TCONS_00022826-exon-sc0000434-1510915933:69352..69371 | Clytia hemisphaerica | exon |
| TCONS_00022826-exon-sc0000434-1510915933:66982..68972 | TCONS_00022826-exon-sc0000434-1510915933:66982..68972 | Clytia hemisphaerica | exon |
| TCONS_00022826-exon-sc0000434-1510915933:64905..65954 | TCONS_00022826-exon-sc0000434-1510915933:64905..65954 | Clytia hemisphaerica | exon |
| TCONS_00022826-exon-sc0000434-1491911889:69352..69371 | TCONS_00022826-exon-sc0000434-1491911889:69352..69371 | Clytia hemisphaerica | exon |
| TCONS_00022826-exon-sc0000434-1491911889:66982..68972 | TCONS_00022826-exon-sc0000434-1491911889:66982..68972 | Clytia hemisphaerica | exon |
| TCONS_00022826-exon-sc0000434-1491911889:64905..65954 | TCONS_00022826-exon-sc0000434-1491911889:64905..65954 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000434 | supercontig | sc0000434:64905..69371 - |
Blast
The following BLAST results are available for this feature:
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