TCONS_00022802 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022802
Unique NameTCONS_00022802
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1306

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022802 ID=TCONS_00022802|Name=TCONS_00022802|organism=Clytia hemisphaerica|type=transcript|length=1306bp
TTTTTTGGTCTGTGTTTTATAACTGATTATTCAAGGATTCATGACATCAT
GCAcaaaaacaaacagactaaagaCAATCTGAGTCATTACTTACAAGTCT
TTAATCTAAAACGCAGTGTTACTGCAGTAGATGAGAGTTAGGAATCAGTG
ATCACGGAGTCTCATTTGTTGACCATGTCAGGGATTTGGTGGTCAGGTTG
ATTAGAAGAGGATGGCTCAAACATCAAATGACTGGAAGAAGAAAGTTGAA
TTTTAtagcgaaaaatttgaaaatgcatTTCCAGATATTGTCAACGAGCT
TGTAGGTGACGATGAAGCGAAACCTGAATTGAGAGAAGCCGCTGCTCGTT
TGCGTAAATCCATCGAGTATAATACATTTGGTGGTAAAAGATTTCACGGG
CTAACCGTCATCTTAACCGTTGATTTTTTACGAAACGGTCAATTATCAGA
AGATGAAATCAAAAAGGGTATTTATTTGGGATGGTGTTTTGAGATTCTGA
AAGCTCTTTTCTTGATTGCCGATGATATTATGGATGGGTCTGAATTGAGG
CGTGGTCGACCATGCTGGCATAAAAAGGTGGGGCTGGTTTCTATCAACGA
AACTTATCTGATGGAACAATGCATCTACGCTctgattgaaaaacatttta
aagaggAATCCTATCTTTTTGAACTGTATAAAACTTTTCATAGAGTTTCA
TACCTTTTGGTGATGGGACAAGAACTGGATATGGTAACATCCGAAAAAAT
TGATGGAGAATTAAACATGGATTCCTTTACTGAGGAGAAATTTCAAACTA
TAGCCAAATACAAGACTGGATATTCCTTTTTCTATCTACCCGTCTGTCTT
GGCTTTCACGTTGCAAAAGTTACAGACCCAAAGATTTTCACGGAAGCTGA
AACAATTCTATTGGAATTAGGGGAATATTTCCAAGTACAAAATGATTATT
TTGATTGCTATGGTGATCCATCGGTTACCGGCAAAATAGGGCGTGATATC
GAAGACGCGAAATGCTCATGGTTTATTACTCAagctttgaaaaagtccaa
cgaagaacaaaaagaaattttaaaagcgAATTACggaaatgatgacgtca
catcaGTAGCCGTTGTCAAGGAGATTTACGAAATCTTAGAAATGGAGAAG
AGCTACTTTACATACAAGGAAAAGAGTCACAACTCGTTACAAAATCTGGT
TCAATCTCTAGGCAGTCATTTTCCTAAAGAATTATTTCAATTCTTTGTTA
TGAAAGTATTTGGGAGAAACACTTAAAACCATTTCAAATGGATTAGCATG
TATATC
Run BLAST on NCBI

protein sequence of TCONS_00022802-protein

>TCONS_00022802-protein ID=TCONS_00022802-protein|Name=TCONS_00022802-protein|organism=Clytia hemisphaerica|type=polypeptide|length=354bp
MAQTSNDWKKKVEFYSEKFENAFPDIVNELVGDDEAKPELREAAARLRKS
IEYNTFGGKRFHGLTVILTVDFLRNGQLSEDEIKKGIYLGWCFEILKALF
LIADDIMDGSELRRGRPCWHKKVGLVSINETYLMEQCIYALIEKHFKEES
YLFELYKTFHRVSYLLVMGQELDMVTSEKIDGELNMDSFTEEKFQTIAKY
KTGYSFFYLPVCLGFHVAKVTDPKIFTEAETILLELGEYFQVQNDYFDCY
GDPSVTGKIGRDIEDAKCSWFITQALKKSNEEQKEILKANYGNDDVTSVA
VVKEIYEILEMEKSYFTYKEKSHNSLQNLVQSLGSHFPKELFQFFVMKVF
GRNT
Run BLAST on NCBI

transcript from alignment at sc0000432:211997..213302

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022802 ID=TCONS_00022802|Name=TCONS_00022802|organism=Clytia hemisphaerica|type=transcript|length=1306bp|location=Sequence derived from alignment at sc0000432:211997..213302 (Clytia hemisphaerica)
GATATACATGCTAATCCATTTGAAATGGTTTTAAGTGTTTCTCCCAAATA
CTTTCATAACAAAGAATTGAAATAATTCTTTAGGAAAATGACTGCCTAGA
GATTGAACCAGATTTTGTAACGAGTTGTGACTCTTTTCCTTGTATGTAAA
GTAGCTCTTCTCCATTTCTAAGATTTCGTAAATCTCCTTGACAACGGCTA
CtgatgtgacgtcatcatttccGTAATTcgcttttaaaatttctttttgt
tcttcgttggactttttcaaagctTGAGTAATAAACCATGAGCATTTCGC
GTCTTCGATATCACGCCCTATTTTGCCGGTAACCGATGGATCACCATAGC
AATCAAAATAATCATTTTGTACTTGGAAATATTCCCCTAATTCCAATAGA
ATTGTTTCAGCTTCCGTGAAAATCTTTGGGTCTGTAACTTTTGCAACGTG
AAAGCCAAGACAGACGGGTAGATAGAAAAAGGAATATCCAGTCTTGTATT
TGGCTATAGTTTGAAATTTCTCCTCAGTAAAGGAATCCATGTTTAATTCT
CCATCAATTTTTTCGGATGTTACCATATCCAGTTCTTGTCCCATCACCAA
AAGGTATGAAACTCTATGAAAAGTTTTATACAGTTCAAAAAGATAGGATT
cctctttaaaatgtttttcaatcagAGCGTAGATGCATTGTTCCATCAGA
TAAGTTTCGTTGATAGAAACCAGCCCCACCTTTTTATGCCAGCATGGTCG
ACCACGCCTCAATTCAGACCCATCCATAATATCATCGGCAATCAAGAAAA
GAGCTTTCAGAATCTCAAAACACCATCCCAAATAAATACCCTTTTTGATT
TCATCTTCTGATAATTGACCGTTTCGTAAAAAATCAACGGTTAAGATGAC
GGTTAGCCCGTGAAATCTTTTACCACCAAATGTATTATACTCGATGGATT
TACGCAAACGAGCAGCGGCTTCTCTCAATTCAGGTTTCGCTTCATCGTCA
CCTACAAGCTCGTTGACAATATCTGGAAatgcattttcaaatttttcgct
aTAAAATTCAACTTTCTTCTTCCAGTCATTTGATGTTTGAGCCATCCTCT
TCTAATCAACCTGACCACCAAATCCCTGACATGGTCAACAAATGAGACTC
CGTGATCACTGATTCCTAACTCTCATCTACTGCAGTAACACTGCGTTTTA
GATTAAAGACTTGTAAGTAATGACTCAGATTGtctttagtctgtttgttt
ttgTGCATGATGTCATGAATCCTTGAATAATCAGTTATAAAACACAGACC
AAAAAA

Coding sequence (CDS) from alignment at sc0000432:211997..213302

>TCONS_00022802 ID=TCONS_00022802|Name=TCONS_00022802|organism=Clytia hemisphaerica|type=CDS|length=1065bp|location=Sequence derived from alignment at sc0000432:211997..213302 (Clytia hemisphaerica)
TTAAGTGTTTCTCCCAAATACTTTCATAACAAAGAATTGAAATAATTCTT
TAGGAAAATGACTGCCTAGAGATTGAACCAGATTTTGTAACGAGTTGTGA
CTCTTTTCCTTGTATGTAAAGTAGCTCTTCTCCATTTCTAAGATTTCGTA
AATCTCCTTGACAACGGCTACtgatgtgacgtcatcatttccGTAATTcg
cttttaaaatttctttttgttcttcgttggactttttcaaagctTGAGTA
ATAAACCATGAGCATTTCGCGTCTTCGATATCACGCCCTATTTTGCCGGT
AACCGATGGATCACCATAGCAATCAAAATAATCATTTTGTACTTGGAAAT
ATTCCCCTAATTCCAATAGAATTGTTTCAGCTTCCGTGAAAATCTTTGGG
TCTGTAACTTTTGCAACGTGAAAGCCAAGACAGACGGGTAGATAGAAAAA
GGAATATCCAGTCTTGTATTTGGCTATAGTTTGAAATTTCTCCTCAGTAA
AGGAATCCATGTTTAATTCTCCATCAATTTTTTCGGATGTTACCATATCC
AGTTCTTGTCCCATCACCAAAAGGTATGAAACTCTATGAAAAGTTTTATA
CAGTTCAAAAAGATAGGATTcctctttaaaatgtttttcaatcagAGCGT
AGATGCATTGTTCCATCAGATAAGTTTCGTTGATAGAAACCAGCCCCACC
TTTTTATGCCAGCATGGTCGACCACGCCTCAATTCAGACCCATCCATAAT
ATCATCGGCAATCAAGAAAAGAGCTTTCAGAATCTCAAAACACCATCCCA
AATAAATACCCTTTTTGATTTCATCTTCTGATAATTGACCGTTTCGTAAA
AAATCAACGGTTAAGATGACGGTTAGCCCGTGAAATCTTTTACCACCAAA
TGTATTATACTCGATGGATTTACGCAAACGAGCAGCGGCTTCTCTCAATT
CAGGTTTCGCTTCATCGTCACCTACAAGCTCGTTGACAATATCTGGAAat
gcattttcaaatttttcgctaTAAAATTCAACTTTCTTCTTCCAGTCATT
TGATGTTTGAGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012815XLOC_012815Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022802-proteinTCONS_00022802-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022802-exon-sc0000432-1491911889:211997..213302TCONS_00022802-exon-sc0000432-1491911889:211997..213302Clytia hemisphaericaexon
TCONS_00022802-exon-sc0000432-1510915933:211997..213302TCONS_00022802-exon-sc0000432-1510915933:211997..213302Clytia hemisphaericaexon
TCONS_00022802-exon-sc0000432-1575043694:211997..213302TCONS_00022802-exon-sc0000432-1575043694:211997..213302Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000432supercontigsc0000432:211997..213302 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0315373	0	0	0	0	0	0	0.0272529	0.0337571	0	0	4.53835	3.23888	0.918206	0.433565	0.412727	0.497684	26.2998	19.7863	0	0.0457555	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008949Isoprenoid_synthase_dom
IPR000092Polyprenyl_synt
IPR033749Polyprenyl_synt_CS
Vocabulary: Biological Process
TermDefinition
GO:0008299isoprenoid biosynthetic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008299 isoprenoid biosynthetic process
Blast
[Close]
BLAST of TCONS_00022802 vs. Swiss-Prot (Human)
Match: FPPS (Farnesyl pyrophosphate synthase OS=Homo sapiens GN=FDPS PE=1 SV=4)

HSP 1 Score: 280.026 bits (715), Expect = 6.360e-89
Identity = 136/340 (40.00%), Postives = 213/340 (62.65%), Query Frame = 2 
Query:  260 EKFENAFPDIVNELVGDDEAKPELREAAARLRKSIEYNTFGGKRFHGLTVILTV-DFLRNGQLSEDEIKKGIYLGWCFEILKALFLIADDIMDGSELRRGRPCWHKK--VGLVSINETYLMEQCIYALIEKHFKEESYLFELYKTFHRVSYLLVMGQELDMVTSEKIDGELNMDSFTEEKFQTIAKYKTGYSFFYLPVCLGFHVAKVTDPKIFTEAETILLELGEYFQVQNDYFDCYGDPSVTGKIGRDIEDAKCSWFITQALKKSNEEQKEILKANYGNDDVTSVAVVKEIYEILEMEKSYFTYKEKSHNSLQNLVQSLGSHFPKELFQFFVMKVFGRN 1270
            + F   F  IV  L  D+   PE+ +A ARL++ +EYN  GGK   GLTV++   + +   +   D +++   +GWC E+L+A FL+ADDIMD S  RRG+ CW++K  VGL +IN+  L+E CIY L++ + +E+ Y   L + F + SY   +GQ LD++T+ +  G +++  FTE+++++I KYKT +  FYLP+    ++A +   K    A+ ILLE+GE+FQ+Q+DY D +GDPSVTGKIG DI+D KCSW + Q L+++  EQ +ILK NYG  +   VA VK +YE L++   +  Y+E S++ +  L++   +  P  +F     K++ R 
Sbjct:   81 QDFVQHFSQIVRVLTEDEMGHPEIGDAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQ--GNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPLPPAVFLGLARKIYKRR 418
The following BLAST results are available for this feature:
BLAST of TCONS_00022802 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FPPS6.360e-8940.00Farnesyl pyrophosphate synthase OS=Homo sapiens GN... [more]
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