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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022789 ID=TCONS_00022789|Name=TCONS_00022789|organism=Clytia hemisphaerica|type=transcript|length=3436bp
GTCGGGGCTTAAGTTTGCCTCTAGCCTTAAGCATGATCAACATCCCCTTA
TTCATCCCAAATCCCGCCTAACACACACCTCGTTTCGACTATCAAATTCA
GAATATAGGTCGCACAAAACAGGTGAGATTCATGGTAACCAATGGAAAAG
TTCCCCCGAAATTTCTGTGCATAGACGACCACACTATAAAGCTCATGTAC
AATGATCCAagagaatttattttttgttacgGCTCGGGGATGGGTCTGAC
CGAAGGGGTGGAGGAGGTCTCTAGGTCATCTCGAACCCAGCCTGGGCACG
AAGAAGCAGTCGTGCCCAGCACAGAAAGAGAGTTCAACTTTGGCAAAGAT
GAAGATGGGAAAATAGTACAACAAATTACAATTAAAAACTGTAAAGACGA
TGCTATTGTAGTAGACGAAGAGAAATCTGAACAAAACACCAAACCAAAAC
CTAAAAACGAAACTAAAAAGGAACAagacagaaaaaaattgttgaagCGC
TGTTTATGTTACGCGCACCATTTCTGATTTCACCCCCACCGCGCGCCATT
CCTGCTACTATTGCATTGTGGCGTTCTGGCGCCCTGTCCCTCCGGATATT
CTTCCATTTTGTTTTGGCTGCTTCCTTCGATTTTACAGCTATCAGAGTCA
GTAACTTCTCAGAAAATTTTATATCTTTCGTTATCTCCTGCATCATTCGG
TGGATTTCGATAAACTATGGTTATCTTACAATCTCTATTGAGCACTGCTT
ATGTATTGCTGTTTATCTCGTTCGATTTCTCCGTCTGTGTTAAAAGAAAG
CTCAACAGTGGTCAACTTCCCCTCACAGCCTCCGGAAATGATCCACCAGC
TCAACACCAACGGTATGATCCCGCACTTGTTGCATCTTTGCCTCCACAGC
AGCGCTCCTTAGAGCAATGGTCCTCTCTCCCATTGGAATCGCTACGGTTA
CACACCAATGCAGATAATGTCCCCACAGCTACACAGCTACCCAGATCGCT
GCCGCCCTTTACCACCACCATCAGTCGGTTTTAACACCAGCGGCTTCAAG
CGTTTTAACACCTGCTGTCGACGATACCGGACCTCCAAACAGCCCTgaca
aattttaaaagaataggAATTACTCCGCAACAATTTCTCGATCAACAAGA
CACTTCTTCAAAGGTCAACACTAAAAcgcaacaaaaagaaaaacctcaaa
aatctcaaaacaccGAATCAAAGATAGGatcttccaaaaaaaaaccgGTA
ATCACTGAATCAAAGATaggaaaaaacaaaaccaaCGCTTCACCTATGAA
AACGAGTGAACCGAACGTCGATATGGACACCGGAACCGAAGATCAACAAG
TCTCACCCTCCGGTGAGGCGAAAATTGACTTCACCAAAACAATCGAACAA
ACTATCAAGACCGGGAAATCCGTAAAGAGGAAGGGAAGGGCCTTATCCGC
CAGAGACGAGAACGTTCAGATGACCAGGAGACGACCTCCAAAAGAGGGAA
AACGGAATCGCCAAAACAGGATGACCCACCTGGGCTGGGGGAGGGTGTCC
AGGAGGCCGAGTCTGCCCTTGAAGGGAAGATCCCCCCCTGAGTCTAATCC
GGAAGTTAACTTAGTGGAACCAAATCTCAGTGAGAGGAGGAGGGAGAAGT
GGAACTTGACTACAATGAGGAAAGCCCAACTCGAACACTCTCTCAAAAAT
ACGAAAGTGAAGGGGACACAATTATCTCTGACGAAACCTTCCCAGACGCT
GACTCTGAGAAACTTCAGATAGATGAGGGGGAAAACTCGAACAAAATTGA
ACAATTCGACACCCAGTCAACACCACCCGGGGAAAACAGTAATGTAGATg
aaatcaaagaattctccGGCACTAGTTCGAAACCCGACGCCCAGTCAACA
CCCAGTTCCACACACAGTCCAACCCCATCCTTTTCGTTTTTTGAACCAAC
ACTTGATCTGAAATCCTTGGGAGAAGAACAAACCCACATTTTCATGAGGA
AGATCCAAAATAggaataaaacaataaaagctGATATAAAACGGGTTAGA
CAAGGAAACCCTGAAAACTATAAGTCAAAGGAAAACTTTAAGAATTGGAC
CATTGaaaaaaccaaaattcaaaaagacGTAGAAAAACTAAGGAGGTTGA
AACCCAATTTGTGGAAAAAGGCAAACCTTCTGGAACCCGTCACTTTCAGA
CCATCCTCCGGAACAGCGGTAAAATCCCCCCCCAAAGTCAATCGCAGCCA
AAAAGCTGAAGAAATGGCCAAGACAGAGGCAAACACCGGGGGAAACTAGC
CGCTGACAAAAAGAAAATGCTCGACCGGGTGACCCCAGATCGACACCCAA
ACGTCCCCTTGACAAAATTCGAATTTAATGCGCTTTGGAAAAAATTGAGG
GAAGATCATAGGAACGCAGAAACCTACCCAAAACTGGAACCCAGAATAGC
AAATGGGAAGCTAATGAGAATGGGATCCATCACATCTCTGATGTGTGGGG
TTGTTGCAGAGATATACCTCCAGAACGTTGCGAAAATGCTTTGCATCAAA
TTTCCATCATTCATCAAAAATCTAATTGCCCCAAAAGAAATAAAGGAAGC
GTTGATCACGAATGCTTGTGTGATCCAAACCCCTTTCAGTACCCAGAATG
CGGATATAGAAGCAATCAACAAATCCATGAAGGTCAGATTAAACCTTGGG
GAGGAATGCGATGATAGCCTATNAATGCGGATATAGAAGCAATCAACAAC
TCCATGAAGATCAGATTAAACCTTGGGGAGGAATGCGATGATAGCCTATA
CCAACTATACCAGAAACATCCTAATTTTTTCGATATTCCTAACtaaaaat
gactgaaaaaaatatttgtaacttGGAACTTTGAAACATGCCTTCCAGTA
CCCATGTCTTTTCCTTGGCTCTATTGGTTTTTATTCGGTCAAAAGTGAGA
TTTGTTCTCCATACGGTTTGTGCCCGATACAATCAATAATTTGTTCCAAA
TCAATGACTAATTGATAACCTCAATAGATTGGAGGGGGTTTCAGCTTTTA
CGTAGGAACATaccttttttttgttttcctcctgtcagatctacaaacaa
caaagaatggccgaattctttttcctcttagagagacgatgttataatga
aagggtaattagtcTTCTCTGGGTCCCCCTGtctatatatattatataca
gaATTATACAAAACATAGACTAGACTGTATAAGGTAGGTTACCCTATTAC
CGTCAGGTTGTCTAATCCCGACCACCCCTATCTATCCACCCATTGAAACC
CCCTATTAGATATCAATTAATAAAGataactagccgtatgcgcagcgtcg
cacgctgcgtgtcccaatccagtgaatcactacacatctaaaaaattcta
aCGGAAGAAAGATAGCCGCCGAtcgatgatttgatt Run BLAST on NCBI protein sequence of TCONS_00022789-protein >TCONS_00022789-protein ID=TCONS_00022789-protein|Name=TCONS_00022789-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MVTNGKVPPKFLCIDDHTIKLMYNDPREFIFCYGSGMGLTEGVEEVSRSS
RTQPGHEEAVVPSTEREFNFGKDEDGKIVQQITIKNCKDDAIVVDEEKSE
QNTKPKPKNETKKEQDRKKLLKRCLCYAHHF Run BLAST on NCBI transcript from alignment at sc0000432:69828..73263 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022789 ID=TCONS_00022789|Name=TCONS_00022789|organism=Clytia hemisphaerica|type=transcript|length=3436bp|location=Sequence derived from alignment at sc0000432:69828..73263 (Clytia hemisphaerica)
aatcaaatcatcgaTCGGCGGCTATCTTTCTTCCGttagaattttttaga
tgtgtagtgattcactggattgggacacgcagcgtgcgacgctgcgcata
cggctagttatCTTTATTAATTGATATCTAATAGGGGGTTTCAATGGGTG
GATAGATAGGGGTGGTCGGGATTAGACAACCTGACGGTAATAGGGTAACC
TACCTTATACAGTCTAGTCTATGTTTTGTATAATtctgtatataatatat
atagaCAGGGGGACCCAGAGAAgactaattaccctttcattataacatcg
tctctctaagaggaaaaagaattcggccattctttgttgtttgtagatct
gacaggaggaaaacaaaaaaaaggtATGTTCCTACGTAAAAGCTGAAACC
CCCTCCAATCTATTGAGGTTATCAATTAGTCATTGATTTGGAACAAATTA
TTGATTGTATCGGGCACAAACCGTATGGAGAACAAATCTCACTTTTGACC
GAATAAAAACCAATAGAGCCAAGGAAAAGACATGGGTACTGGAAGGCATG
TTTCAAAGTTCCaagttacaaatatttttttcagtcatttttaGTTAGGA
ATATCGAAAAAATTAGGATGTTTCTGGTATAGTTGGTATAGGCTATCATC
GCATTCCTCCCCAAGGTTTAATCTGATCTTCATGGAGTTGTTGATTGCTT
CTATATCCGCATTNATAGGCTATCATCGCATTCCTCCCCAAGGTTTAATC
TGACCTTCATGGATTTGTTGATTGCTTCTATATCCGCATTCTGGGTACTG
AAAGGGGTTTGGATCACACAAGCATTCGTGATCAACGCTTCCTTTATTTC
TTTTGGGGCAATTAGATTTTTGATGAATGATGGAAATTTGATGCAAAGCA
TTTTCGCAACGTTCTGGAGGTATATCTCTGCAACAACCCCACACATCAGA
GATGTGATGGATCCCATTCTCATTAGCTTCCCATTTGCTATTCTGGGTTC
CAGTTTTGGGTAGGTTTCTGCGTTCCTATGATCTTCCCTCAATTTTTTCC
AAAGCGCATTAAATTCGAATTTTGTCAAGGGGACGTTTGGGTGTCGATCT
GGGGTCACCCGGTCGAGCATTTTCTTTTTGTCAGCGGCTAGTTTCCCCCG
GTGTTTGCCTCTGTCTTGGCCATTTCTTCAGCTTTTTGGCTGCGATTGAC
TTTGGGGGGGGATTTTACCGCTGTTCCGGAGGATGGTCTGAAAGTGACGG
GTTCCAGAAGGTTTGCCTTTTTCCACAAATTGGGTTTCAACCTCCTTAGT
TTTTCTACgtctttttgaattttggttttttCAATGGTCCAATTCTTAAA
GTTTTCCTTTGACTTATAGTTTTCAGGGTTTCCTTGTCTAACCCGTTTTA
TATCagcttttattgttttattccTATTTTGGATCTTCCTCATGAAAATG
TGGGTTTGTTCTTCTCCCAAGGATTTCAGATCAAGTGTTGGTTCAAAAAA
CGAAAAGGATGGGGTTGGACTGTGTGTGGAACTGGGTGTTGACTGGGCGT
CGGGTTTCGAACTAGTGCCggagaattctttgatttcATCTACATTACTG
TTTTCCCCGGGTGGTGTTGACTGGGTGTCGAATTGTTCAATTTTGTTCGA
GTTTTCCCCCTCATCTATCTGAAGTTTCTCAGAGTCAGCGTCTGGGAAGG
TTTCGTCAGAGATAATTGTGTCCCCTTCACTTTCGTATTTTTGAGAGAGT
GTTCGAGTTGGGCTTTCCTCATTGTAGTCAAGTTCCACTTCTCCCTCCTC
CTCTCACTGAGATTTGGTTCCACTAAGTTAACTTCCGGATTAGACTCAGG
GGGGGATCTTCCCTTCAAGGGCAGACTCGGCCTCCTGGACACCCTCCCCC
AGCCCAGGTGGGTCATCCTGTTTTGGCGATTCCGTTTTCCCTCTTTTGGA
GGTCGTCTCCTGGTCATCTGAACGTTCTCGTCTCTGGCGGATAAGGCCCT
TCCCTTCCTCTTTACGGATTTCCCGGTCTTGATAGTTTGTTCGATTGTTT
TGGTGAAGTCAATTTTCGCCTCACCGGAGGGTGAGACTTGTTGATCTTCG
GTTCCGGTGTCCATATCGACGTTCGGTTCACTCGTTTTCATAGGTGAAGC
GttggttttgttttttcctATCTTTGATTCAGTGATTACcggtttttttt
tggaagatCCTATCTTTGATTCggtgttttgagatttttgaggtttttct
ttttgttgcgTTTTAGTGTTGACCTTTGAAGAAGTGTCTTGTTGATCGAG
AAATTGTTGCGGAGTAATTcctattcttttaaaatttgtcAGGGCTGTTT
GGAGGTCCGGTATCGTCGACAGCAGGTGTTAAAACGCTTGAAGCCGCTGG
TGTTAAAACCGACTGATGGTGGTGGTAAAGGGCGGCAGCGATCTGGGTAG
CTGTGTAGCTGTGGGGACATTATCTGCATTGGTGTGTAACCGTAGCGATT
CCAATGGGAGAGAGGACCATTGCTCTAAGGAGCGCTGCTGTGGAGGCAAA
GATGCAACAAGTGCGGGATCATACCGTTGGTGTTGAGCTGGTGGATCATT
TCCGGAGGCTGTGAGGGGAAGTTGACCACTGTTGAGCTTTCTTTTAACAC
AGACGGAGAAATCGAACGAGATAAACAGCAATACATAAGCAGTGCTCAAT
AGAGATTGTAAGATAACCATAGTTTATCGAAATCCACCGAATGATGCAGG
AGATAACGAAAGATATAAAATTTTCTGAGAAGTTACTGACTCTGATAGCT
GTAAAATCGAAGGAAGCAGCCAAAACAAAATGGAAGAATATCCGGAGGGA
CAGGGCGCCAGAACGCCACAATGCAATAGTAGCAGGAATGGCGCGCGGTG
GGGGTGAAATCAGAAATGGTGCGCGTAACATAAACAGCGcttcaacaatt
tttttctgtctTGTTCCTTTTTAGTTTCGTTTTTAGGTTTTGGTTTGGTG
TTTTGTTCAGATTTCTCTTCGTCTACTACAATAGCATCGTCTTTACAGTT
TTTAATTGTAATTTGTTGTACTATTTTCCCATCTTCATCTTTGCCAAAGT
TGAACTCTCTTTCTGTGCTGGGCACGACTGCTTCTTCGTGCCCAGGCTGG
GTTCGAGATGACCTAGAGACCTCCTCCACCCCTTCGGTCAGACCCATCCC
CGAGCcgtaacaaaaaataaattctctTGGATCATTGTACATGAGCTTTA
TAGTGTGGTCGTCTATGCACAGAAATTTCGGGGGAACTTTTCCATTGGTT
ACCATGAATCTCACCTGTTTTGTGCGACCTATATTCTGAATTTGATAGTC
GAAACGAGGTGTGTGTTAGGCGGGATTTGGGATGAATAAGGGGATGTTGA
TCATGCTTAAGGCTAGAGGCAAACTTAAGCCCCGAC Coding sequence (CDS) from alignment at sc0000432:69828..73263 >TCONS_00022789 ID=TCONS_00022789|Name=TCONS_00022789|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at sc0000432:69828..73263 (Clytia hemisphaerica)
TCAGAAATGGTGCGCGTAACATAAACAGCGcttcaacaatttttttctgt
ctTGTTCCTTTTTAGTTTCGTTTTTAGGTTTTGGTTTGGTGTTTTGTTCA
GATTTCTCTTCGTCTACTACAATAGCATCGTCTTTACAGTTTTTAATTGT
AATTTGTTGTACTATTTTCCCATCTTCATCTTTGCCAAAGTTGAACTCTC
TTTCTGTGCTGGGCACGACTGCTTCTTCGTGCCCAGGCTGGGTTCGAGAT
GACCTAGAGACCTCCTCCACCCCTTCGGTCAGACCCATCCCCGAGCcgta
acaaaaaataaattctctTGGATCATTGTACATGAGCTTTATAGTGTGGT
CGTCTATGCACAGAAATTTCGGGGGAACTTTTCCATTGGTTACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022789-exon-sc0000432-1491911889:69828..73263 | TCONS_00022789-exon-sc0000432-1491911889:69828..73263 | Clytia hemisphaerica | exon |
| TCONS_00022789-exon-sc0000432-1510915933:69828..73263 | TCONS_00022789-exon-sc0000432-1510915933:69828..73263 | Clytia hemisphaerica | exon |
| TCONS_00022789-exon-sc0000432-1575043694:69828..73263 | TCONS_00022789-exon-sc0000432-1575043694:69828..73263 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000432 | supercontig | sc0000432:69828..73263 . |
Blast
The following BLAST results are available for this feature:
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