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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022497 ID=TCONS_00022497|Name=TCONS_00022497|organism=Clytia hemisphaerica|type=transcript|length=3070bpRun BLAST on NCBI protein sequence of TCONS_00022497-protein >TCONS_00022497-protein ID=TCONS_00022497-protein|Name=TCONS_00022497-protein|organism=Clytia hemisphaerica|type=polypeptide|length=921bp MKTRFTTIDIKAALAEINKSDAIGLRVMNVYDIDNRTYLVRLVHGDTKIVRun BLAST on NCBI transcript from alignment at sc0000424:34485..61854+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022497 ID=TCONS_00022497|Name=TCONS_00022497|organism=Clytia hemisphaerica|type=transcript|length=27370bp|location=Sequence derived from alignment at sc0000424:34485..61854+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000424:34485..61854+ >TCONS_00022497 ID=TCONS_00022497|Name=TCONS_00022497|organism=Clytia hemisphaerica|type=CDS|length=60852bp|location=Sequence derived from alignment at sc0000424:34485..61854+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00022497 vs. Swiss-Prot (Human)
Match: NEMF (Nuclear export mediator factor NEMF OS=Homo sapiens GN=NEMF PE=1 SV=4) HSP 1 Score: 786.949 bits (2031), Expect = 0.000e+0 Identity = 388/701 (55.35%), Postives = 514/701 (73.32%), Query Frame = 3
Query: 135 MKTRFTTIDIKAALAEINKSDAIGLRVMNVYDIDNRTYLVRLVHGDTKIVILIESGNRIHLTEYDWPKNMMPSGFSMKCRKHLRGRRLAAVNQIGIDRIVDFTFGYDEAAYHLIVELYDRGNIILTDHEYKILQLLRVRADTDKDVKFAVREQYPVDLAKQHEGVPNEEKIQTILKEAKPGENLKRILNPNFVYGPAVLEHTLLSVGLKPNAKVPQQLNPEDSEVINKISNALHNSENILQSIQD-DPKGYIIQRAEXX-XXXXXXXXXXLLTYAEFHPYFYEQHQKSPNLEFPSFNKSVDEFFSKLESQKIDMKAMNAEKSALKRLENVKDDHKKRLEALKSSQDLDTTKAELIEMNLPLVEQAIATINSAIANQIDWEEIEDIVKEAQSQHDPIASSIKSLKLNVNQIVLSLRNFY-XXXXXXXXXXXXXGENKN----------------LKKSSSPKTIEINIDLGLSAFANARSFHNKRRQAASKEEKTIQASKKALRSAEQKTKETLKEVQTAKMISKTRKANWFEKFYWFISSENYLVVGGRDQQQNELLVKRYLRAGDLYVHADLHGASSVIIINHGKGDIPPKTLNEAGTMAICYSAAWDARVVTSAWWVHHNQVSKTAPSGEYLTTGSFMIRGKKNYLPPSHLVMGFSVMFKLEESSIPNHVNDRRVRTIEDDVASQVSEADTGTIDEEQE 2180
MK+RF+TID++A LAE+N S +G+RV NVYD+DN+TYL+RL D K +L+ESG RIH TE++WPKNMMPS F+MKCRKHL+ RRL + Q+G+DRIVDF FG DEAAYHLI+ELYDRGNI+LTD+EY IL +LR R D DVKFAVRE+YP+D A+ E + E++ I+ A GE LKR+LNP YGPA++EH LL G N KV ++L +D I K+ +L +E+ +++ + KGYIIQ+ E K + + +LTY EFHP+ + QH + P +EF SF+K+VDEF+SK+E QKID+KA+ EK ALK+L+NV+ DH+ RLEAL+ +Q++D K ELIEMNL +V++AI + SA+ANQIDW EI IVKEAQ+Q DP+AS+IK LKL N + + LRN Y + + DD D KN L+K K + +++DL LSA+ANA+ +++ +R AA K +KT++A++KA +SAE+KTK+TLKEVQT I K RK WFEKF WFISSENYL++GGRDQQQNE++VKRYL GD+YVHADLHGA+S +I N IPP+TL EAGTMA+CYSAAWDARV+TSAWWV+H+QVSKTAP+GEYLTTGSFMIRGKKN+LPPS+L+MGFS +FK++ES + H +R+VR ++D+ + ++ + I EE E
Sbjct: 1 MKSRFSTIDLRAVLAELNAS-LLGMRVNNVYDVDNKTYLIRLQKPDFKATLLLESGIRIHTTEFEWPKNMMPSSFAMKCRKHLKSRRLVSAKQLGVDRIVDFQFGSDEAAYHLIIELYDRGNIVLTDYEYVILNILRFRTDEADDVKFAVRERYPLDHARAAEPLLTLERLTEIVASAPKGELLKRVLNPLLPYGPALIEHCLLENGFSGNVKVDEKLETKD---IEKVLVSLQKAEDYMKTTSNFSGKGYIIQKREIKPSLEADKPVEDILTYEEFHPFLFSQHSQCPYIEFESFDKAVDEFYSKIEGQKIDLKALQQEKQALKKLDNVRKDHENRLEALQQAQEIDKLKGELIEMNLQIVDRAIQVVRSALANQIDWTEIGLIVKEAQAQGDPVASAIKELKLQTNHVTMLLRNPYLLSEEEDDDVDGDVNVEKNETEPPKGKKKKQKNKQLQKPQKNKPLLVDVDLSLSAYANAKKYYDHKRYAAKKTQKTVEAAEKAFKSAEKKTKQTLKEVQTVTSIQKARKVYWFEKFLWFISSENYLIIGGRDQQQNEIIVKRYLTPGDIYVHADLHGATSCVIKNPTGEPIPPRTLTEAGTMALCYSAAWDARVITSAWWVYHHQVSKTAPTGEYLTTGSFMIRGKKNFLPPSYLMMGFSFLFKVDESCVWRHQGERKVRVQDEDMET-LASCTSELISEEME 696 The following BLAST results are available for this feature:
BLAST of TCONS_00022497 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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