TCONS_00022459 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022459
Unique NameTCONS_00022459
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1244

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022459 ID=TCONS_00022459|Name=TCONS_00022459|organism=Clytia hemisphaerica|type=transcript|length=1244bp
ccagctttgGACTATAGTAGTACCCCCGTTTGACATTTACATGACAAATT
TATTCTTACCACATCTTGGATTACTTTTCTCATTACAATAAGTGATAAAC
TGCTCAGTCATTGTCCTGGTCTTTGAATAGCGGAAGATCAGAAAGTAGGC
TGGGATCCTGCTGAAAAAGCAGGCTGCAGGTAGCCATATTGGAATTTTAT
GTATATACCAATATCGAGTTTAGGCTTGCTAGTAAATTCACTAATATTGG
tcaattcaaaaatttaaattcgtGCCCATTTCCTTTTTAAGCGGGATGTT
GCCGAGCGCTGATTGGCTTTTCTTTGCAAAGCAcatgagaaaaatgaaat
caaaagtgaaacCAGAGAACactaatttttaaatttctaaaatggCGGGA
GAAGTGAAAGGATTTTTGTATGGATGGGTTggaaaaaacctaaaaacaat
aCCTAAATTCGAACCGAACCCTAATGGTCCACACCGATTCAACTTCCAGA
TTTCCATTCAAggtgtcaattacattggaaaTGGTGGTGGTAAAAACAAG
AAAGAAGGAGAAGCTGTGGCAGCCCATAACATGCTGAATCATATGGTCCA
AGCTGGAATCATACCAAGAAATGCTGTCCCTCCAAATATGCTTAATTTTT
CAGTGCCTGCAGAACCTCAAACCAGTGGATCAACAGTTGGAGCACTAGGA
GGATCAAATGTTGGGAGGTCTCTTCCCAGCTCTGGTCCACTGGCTCCTCA
CCAGATTTCTCCTGGCCAGAGTGGACAACAAGACCAAAAACCACCTCAAA
TGATTCAACAGGCCGCTCCAATTTCTATGAGCCCTGGTCAAAAACAGAGT
GTAGGAGCCAGAAACTATCATTATAATATCCATGATTTGAAACGCAAGCT
GGATGAGGCGGAAGAAGTTGACACGAATTCTCATCTTCATGGCAACTGGA
ATATAACAAACGCAAAATCAGCACTCCATGGTTTTCTAAACAAGCGAAAT
ATTCCTGctgattttcagtattttcaaGAAGGTCCTGATCATTCAAGATT
TTTCCGTGCTAATCTCAGCTTCTTTGTGAATGAAGCAGGAAGAACATTGA
ATGGGAAAGGTACAGCTAGCTCAAAGAAACTGGCTGCTCAGAATTGTGCA
TTGAGTTTGGTGCGGCAACTTTTTCATCTTGGAGCAATCGAAGCAGCAGA
AGTTGGTCAAGTACAGCCAAAGAAAGTTAAAGTAGAAGAggttt
Run BLAST on NCBI

protein sequence of TCONS_00022459-protein

>TCONS_00022459-protein ID=TCONS_00022459-protein|Name=TCONS_00022459-protein|organism=Clytia hemisphaerica|type=polypeptide|length=284bp
MAGEVKGFLYGWVGKNLKTIPKFEPNPNGPHRFNFQISIQGVNYIGNGGG
KNKKEGEAVAAHNMLNHMVQAGIIPRNAVPPNMLNFSVPAEPQTSGSTVG
ALGGSNVGRSLPSSGPLAPHQISPGQSGQQDQKPPQMIQQAAPISMSPGQ
KQSVGARNYHYNIHDLKRKLDEAEEVDTNSHLHGNWNITNAKSALHGFLN
KRNIPADFQYFQEGPDHSRFFRANLSFFVNEAGRTLNGKGTASSKKLAAQ
NCALSLVRQLFHLGAIEAAEVGQVQPKKVKVEEV
Run BLAST on NCBI

transcript from alignment at sc0000421:21920..32370-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022459 ID=TCONS_00022459|Name=TCONS_00022459|organism=Clytia hemisphaerica|type=transcript|length=10451bp|location=Sequence derived from alignment at sc0000421:21920..32370- (Clytia hemisphaerica)
CCAGCTTTGGACTATAGTAGTACCCCCGTTTGACATTTACATGACAAATT
TATTCTTACCACATCTTGGATTACTTTTCTCATTACAATAAGTGATAAAC
TGCTCAGTCATTGTCCTGGTCTTTGAATAGCGGAAGATCAGAAAGTAGGC
TGGGATCCTGCTGAAAAAGCAGGCTGCAGGTAGCCATATTGGAATTTTAT
GTATATACCAATATCGAGTTTAGGCTTGCTAGTAAATTCACTAATATTGG
TCAATTCAAAAATTTAAATTCGTGCCCATTTCCTTTTTAAGCGGGATGTT
GCCGAGCGCTGATTGGCTTTTCTTTGCAAAGCACATGAGAAAAATGAAAT
CAAAAGTGAAACCAGAGAACACTAATTTTTAAATTTCTAAAATGGCGGGA
GAAGTGAAAGGATTTTTGTATGGATGGGTTGGAAAAAACCTAAAAACAAT
ACCTAAATTCGAACCGAACCCTAATGGTCCACACCGATTCAACTTCCAGG
TAATTTTTTAAACCTTTCAAGCCGAATTATATCATATTTTCTTTAATGTA
CCTTTTGAAAATGAAGTTTTATAAAACAATCAATGTGGATCCTGACGACT
TGTAGCAAAAGGTCTGCGGCAAGAATTTATGAGAAATTGGACCCCTTTTC
CTTCCTTTTAAAGATGAGGTCTAGCAAACTGGATGAAATTCAGCACAGAA
TCTAACTTGCTTATTATTTACATTTTGGAAGTTATCACACTGTACCGTAG
AGTCGTCTAATCTCGACATACGTCTTGCAATCTCGACACCGGATCTGTAA
AATAATCAAAACAAACCTTGAATGAAATTCTTGGTATCATTCTTATCGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCCAGTATGGCGGTCACATTAAATTCAAAAGGA
AACCGGGTTCTTTTTATTATTTTCGGTTCACGGTAAAAATGTCTACTAAA
ATATTCCTCGCGTGCAAAATGTTGTGTTGTTGTGATTTGGACATCTTCGT
TGAAAGTATATGCTAATTAGTTTTTAGCGATTACTACATCGTTAAAGTTT
TCTTTTCAAATATAAAGTAATAACACTTCACATTTCTCATATTATATTAA
CAATCTGTGATGTGATAGAGAGAGAGAGTACATTTTAGTGATTGATTGAT
AACTTTGGTATGTATTTGTTTATGTTTGATTTTTTATTTCGAAGACCAGC
CTCCAGCCTACAGCTATGTCGAGATTGCAAGACGTATGTCGAGATTAGAC
GACTCTACTATACCAGACGGTACTAATCGAATGTTCGGAACGTTTGATTC
CAGACCCGATCAATCGAACTTGTCGAACCAATCGAATAATCGAACTAATC
GAACTCCATCGAACGATTAAAGTTCGATTAAAAAAATTAATCGAAATCTA
GGATTTTTTAAAAGATTGTAAGTGTTCGATTAAGTTCGATCAATGGGATC
AATTGCAGGATATTTTTAATCAAAACTCTTAATTACATAAGCAAAATAGT
CGTTTGGAGATCTAAAATAGCTTGAATTTTGGGAGTCTATTCAGGTCTAT
TGTATAAATTTAAGTTGGTGGAGAGGAAAAAATTAATTTGGGAAATTTTG
GGTAAATGCTTGATCGATTTATCTTGCTTTAACTTGCTTACAGTAATGCT
AGTCATAGCTATGACAATGCACTTTAATTTTAAATTTGAGGGTTGCAGGT
TCTATGGGAAAAAAAATTTTGTATGGAGCCCAAAGAGTAAAATAGCAAAT
TTCTAGAGCTTATATATAATTGGATATTTTCATGGAAAGTGGATTTTTAA
CACATTTGGACTACATGAAATCATTCTTTCATTAGATTTCCATTCAAGGT
GTCAATTACATTGGAAATGGTGGTGGTAAAAACAAGAAAGAAGGAGAAGC
TGTGGCAGCCCATAACATGCTGAATCATATGGTCCAAGCTGGAATCATAC
CAAGAAATGCTGTCCCTCCAAATATGCTTGTAAGATCCTTCTTTTACAAG
TTTATTTAGGGATCTTCGACAAAAAAATTTCGAATTTTTCATCGACATTG
GGCCAATAAGGGGGTGGGGGGTCCAACTACATACCGATAAAAAAACAAGT
ATTGAGACGAAAATCCTTTCAGCCAATTTCTTTCTGTTTTCGTCCACAAA
CTCCACTGAAAGCATATGATTGCACTTGCTTTCACCTTTGCGCACAAATT
CACAACTTTAAAAGTACAGTTTTGAACTAGCTTTGATTTCATTGGCCAGC
GCGCTGCCTTTTCCTTCAAAATGTTGCGACTTCATCCCATCATTTTAACT
TTCATTTTGATTAAAAATATCAATGCGGGTATGAACAAACTCAATGTTGG
TGCACAAATGGACAAAAATTCAACGGTGACGGGTCGGGTGGGAAGGCGAT
GGCGGACAAGATTGGAAGAAATTGTGTTTTTGAAGATGTAAAAGTTGGTT
TTGAAAAATAAGAGCAAGGGGGGAGGGGGTCTGAAGCTTATCAGCCCAAT
GCCGATAAATAACCCGAAAGCTTTTTGTCGAAGACCCCTTATTTTAGCAT
TCTCTTTAAAGGTGGAAGATGTTATTCCAAAGTACTGTAAAAAAGATTAG
TTTCCACAGGAAAGGACATTTTTGTAATTTTTCACTGCACTTTTTAAGAT
GACATTAAGAATGTGAAAAAAAGTGGCTATTAAAAAATATATTTTTGTTG
GTTGAAGAGAATGCGCCAATTTTCTAATGTGAAAAGAACTAATTTTCTAG
CTTAACCCTGTGGCTAAAAAAATAATTTCATATTCTAAAGCTAGCTAAGG
TGATTTTTTGTGGCTAGAAGTCATTTTCAAGCGATAAATTGTGGCATTGA
ACTTTGATCTTGATAAAATTTGATGTAGGGTTCAAATAACTTTTAAGTAA
AAAGTCTCCGGAGGTGACTATGTCGCTCAAGAAACAAACTATATATAGAA
ATTTTGTGAAAAAAATGTGAATTTTTGTGGCAAACTTAAGGCCTTATTAA
AGAAACATGGTATTCTAATCATTATAGTGTGACTACCTTACTTTTCCAAA
TTCCCAAAAACATACTTTTAAGAGAAGCCCAGATCTAACTCGATAAGGAA
TAAGCATCCCTGAGTGTGAATTGTTGTGGCTAAAGAGAAACTTGCTCTGT
GAAAAATGGTGGCTTTTTGCTGAAAATTTACATTTTTTGACAGGATTTTC
AACTTTTGAGCTACTTTTACTAATTGGTTGAGTTAATTTAGATGAAGGGA
TGTAATGGATTTCTGAAAACAATAATGTTAGCCACAAAATGTCACCTGTA
TGACTCCAAGCAAACTGCAAAGATTCAATGAATTTCTTAAACTGTTTATT
AAGGAATTGATTAAATTGAAGGACTTTATGGTATAAATTGATTTTAAAGA
ACAAATTTTCCAGAGCTAGTTAACCACATTTAATCACAATATTAGAAAAT
GGTTTTGGTTATCAAAATAAGAGTTTTTTGCTAGTTTCATTGGACAAAGC
CTTGTAGGTATCTACTATCTAAAGATCTAATAGAATTTCTATTCATTTAA
TATTCATTCATTAATAAGTAATTTTTAGTTATTTTTTATTAGGGAATATT
TTAAAATTCTACATTTATTCTTGATAGCCACTTTCCATCACCTCTCTTTT
GTGTGAAACAGGTAATGTTATATATCAATAGATCTCTATTTAGTTATAAA
AATACTTCTTCTTAAAATACCCCTCCTTTTTTTAGCCACAAAACATCACA
AAAGGACTTTAGGCATAGATCATAGTCAATTCATACAAAAGTATAGACTT
CCTAGGTTAGATTTCCCTTGAAATCACATCTTTAAACAGGCTAGTGTTTT
TTTGTGGATATAAATTGTAAAGTCTGAGAAATTGCTTTAAATTGACATAA
TTAGCCACTAACTTTCACACATATGAAAATATCAGTATTTTACGACATTA
GCGTATTCTAAGCTATCATTTGAGCATTTCTATTTTTACTTCAAAAATAA
TTTCAGCTTACTTCGAACCACAAAATTTCACTTGTCTCTTTAAAATTTCC
ATCACATTTTCATTACAAGATATCAATCAACATTTCAACAAGCTAATCTA
CATAACCTTTTTAAACAAAAAGTCAAAGTGAAATTTTGAGAATACGTTGA
AAAAACACAAGAAAACCTTGAATATCAACTACAATAATTAACAAAAAAGT
TTTTTAAACTATTGAAAAGCATCAACCTACAGGGACAAGCACTTTTCTAG
AAGTTGTCAACTTAGGACTTAGCATTTAGTGAATTATAATATGGTTTTTC
TAAAAAGACCACTTTTTGTAAAATTCTAAAAAATGTCCTTTCCTGTGGAA
ACTAATAAAAAGAAAAGATGATTTTTTAAGTTAAAGAATTTAGGCTTATA
TAAAATTACCAAGCGCCAATTTAAAAAAGGCAATCAACTTTTGGACCTAC
CTTTAATAAGGGGGGTCCTATAAATTAACCAGTGTAAGTCTGTCCGTCTC
TTATTAGGTTTCTGAGGATTGGCTCATTCGATTTTTCTGATTTTTTGCTC
AATGATGCAAAATGGTAATTCCCAAAATGTGACGGAGCCCGATTTTCAAA
ATTAAAAATTTTGGGTAAATTTTAGCCAAAAAACGGCTAAAAAAGTTTTT
TTTGACTTTGCTGGACTTTGTGAAATATTAAATCATTAATCTTTTCTGAT
ATTTTGCATGAAAGTAGGGTACCATCATAGGTGAAAGATGGCTCTAGCAG
ATTTGCGTAAAAAAAGTTTTTGGCTCAAAAAATGCATCTTTATCTATAAA
CATCACTATCTATAAGCATACATCTGTTCTTAGCCAAAGCACTCAATTTT
CTGATGAGATGAGAGAGATGTTTTTTTGCTCATGAAGGCTTAATTCTGAA
GAATATTTGTGTTGAGGCATGAAATTTTGGTTGCTAGACGTGTTTTTATA
GAAAAATGGGTCAAATCTGGTCAAATTCAATATTTTTTTAAAGCTCATTA
CCAATTAATTGGTTATAAGATTTTCTCGAGATTTGCTTATTCATTCTTTG
TGATTTTTTGCACAAAGGTGCATAACTATAAACCCTTGAATATGAAATTC
CAGCTTAAAAAAAAGACTAAAAAAGGGCTTTGGACTTTGTAGAAAACTGG
TCCATCTGGGACCATAAATTTTTCCTGATTTTTTGCATGAAAGTAGGGTA
CCATCATTGGTAAAAGATAGCTGAAGCAGATTTTCACAAAAAAATTGAAT
TTTTATCCCTAAGAATCATATATTGTAGTTGAACACCATTTAAAAGAGTG
CTTGATAGAGCAAATTCATAAATTTATTTCAAAATTTCAATGTTAAAAAA
AGTACATTACATTACTTCAAGTTTCATGTCATGCTCATGTAGATATCGAT
TATGCTTTAAATGCATAGCCAGGTAGGTCCAAAAGTATCATTGCTTGTTA
GACATTGAATTGCTTCAGTACTTATTTTTTGACTGTCCAGCCTGTATCAG
CAGTTAAATAGATTTGGATTTAACTCTTTACTTTCTTACAGAATTTTTCA
GTGCCTGCAGAACCTCAAACCAGTGGATCAACAGTTGGAGCACTAGGAGG
ATCAAATGTTGGGAGGTCTCTTCCCAGCTCTGGTCCACTGGCTCCTCACC
AGATTTCTCCTGGCCAGAGTGGACAACAAGACCAAAAACCACCTCAAATG
ATTCAACAGGCCGCTCCAAGTANTGAAATATTAAATCATTAATCTTTTCT
GATATTTTGCATGAAAGTAGGGTACCATCATAGGTGAAAGATGGCTCTAG
CAGATTTGCATAAAGAAAGTTTTTGGCTCAAAAAATGCATCTTTATCTAT
AAACATCACTATCTATAAGCATACATCTGTTCTTAGCCAAAGCACTCAAT
TTTCTGATGAGAGAGATGTTTTTTTGCTCATGAAGGCTTAATTCAGAAGA
ATATTTGTGTTGAGGCATGAAATTTTGGTTGCTAGACGTGTTTTTATAGA
AAAATGGGTCAAATTCAATATTTTTTTAAAGCTCATTACCAATTAATTGG
TTATAAGATTTTCTCGAGATTTGCTTATTCATTCTTTGTGATTTTTTGCA
CAAAGGTGCATAACTATAAACCCTTGAATATGAAATTCCAGCTTAAAAAA
AAGACTAAAAAAGGGCTTTGGACTTTGTAGAAAACTGGTCCATCTGGGAC
CATAAATTTTTCCTGATTTTTTGCATGAAAGTAGGGTACCATCATTGGTA
AAAGATAGCTGAAGCAGATTTTCACAAAAAAATTGAATTTTTATCCCTAA
GAATCATATATTGTAGTTGAACACCATTTAAAAGAGTGCTTGATAGAGCA
AATTCATAAATTTATTTCAAAATTTCAANGAAATTTTCACAAAAAAATTG
AATCTTTATCCCTAAGAATCATATATTGTAGTTGAACACCATTTAAAAGA
GTGCTTGATAGAGCAAATTCATAAATTTATTTCAAAATTTCAATGTTAAA
AAAAGTACATTACATTACTTCAAGTTTCATGTCATGCTCATGTAGATATC
GATTATGCTTTAAATGCATAGCCAGGTAGGTCCAAAAGTATCATTGCTTG
TTAGACATTGAATTGCTTCAGTACTTATTTTTTGACTGTCCAGCCTGTAT
CAGCAGTTAAATAGATTTGGATTTAACTCTTTACTTTCTTACAGAATTTT
TCAGTGCCTGCAGAACCTCAAACCAGTGGATCAACAGTTGGAGCACTAGG
AGGATCAAATGTTGGGAGGTCTCTTCCCAGCTCTGGTCCACTGGCTCCTC
ACCAGATTTCTCCTGGCCAGAGTGGACAACAAGACCAAAAACCACCTCAA
ATGATTCAACAGGCCGCTCCAAGTAGGTTTAATTAGAAAAATTCCAATTT
CTAGTATCAGAATTTTTACTCAAAGAACTCAGAAAGTGGTTAGTATTCTT
CACATCACAGTTAATAATCACTAAGTAGGATCTCCTAGCAATTACAGCAC
TACTTACAGACTAACTATTATTCTATGAGCAATGGCCTCAAAAGATTTTT
TTTGTAGATTTGAAGTTAAATGTCTGAAGAAATTTGATATTGTAAAAATG
ATAAAGTCATAAAGTTATTGTATTAGAGTGCTAGATGCTTAGCTCTAGTT
TAGACGGCCCACTTTTTGCCCTGCCTATTCTAATTGTGAATTTAAAGTGG
GCATAAAGTGGGCTGTCTAAAATGCATTGCCCTCTTTTGACGTCAATGCA
ATGACTTCTTTCAATCTTTTTCAAGCAAAGATTTAAGCTGCCAACTTTAA
TTACCCAACTTCTGCCTACTCTAACAATTAGANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNACACCATTTAAAAGAGTGCTTGATAGAGCAAAT
TCATAAATTTATTTCAAAATTTCAATGTTAAAAAAAGTACATTACATTAC
TAACTTCAAGTTTCATGTCATGCTCATGTAGATATCGATTATGCTTTAAA
TGCATAGCCAGGTAGGTCCAAAAGTATCATTGCTTGTTAGACATTGAATT
GCTTCAGTACTTATTTTTTGACTGTCCAGCCTGTATCAGCAGTTAAATAG
ATTTGGATTTAACTCTTTACTTTCTTACAGAATTTTTCAGTGCCTGCAGA
ACCTCAAACCAGTGGATCAACAGTTGGAGCACTAGGAGGATCAAATGTTG
GGAGGTCTCTTCCCAGCTCTGGTCCACTGGCTCCTCACCAGATTTCTCCT
GGCCAGAGTGGACAACAAGACCAAAAACCACCTCAAATGATTCAACAGGC
CGCTCCAAGTAGGTTTAATTAGAAAAATTCCAATTTCTAGTATCAGAATT
TTTACTCAAAGAACTCAGAAAGTGGTTAGTATTCTTCACATCACAGTTAA
TAATCACTAAGTAGGATCTCCTAGCAATTACAGCACTACTTACAGACTAA
CTATTATTCTATGAGCAATGGCCTCAAAAGATTTTTTTTGTAGATTTGAA
GTTAAATGTCTGAAGAAATTTGATATTGTAAAAATGATAAAGTCATAAAG
TTATTGTATTAGAGTGCTAGATGCTTAGCTCTAGTTTAGACGGCCCACTT
TTTGCCCTGCCTATTCTAATTGTGAATTTAAAGTGGGCATAAAGTGGGCT
GTCTAAAATGCATTGCCCTCTTTTGACGTCAATGCAATGACTTCTTTCAA
TCTTTTTCAAGCAAAGATTTAAGCTGCCAACTTTAATTACCCAACTTCTG
CCTACTCTAACAATTAGATGGGCAGAAAGTCAACCGTCTAAACTAGAGCT
TAGACATTTGAGATCTTTCAACCCTGGCAAAAATGTCCTTCTTTTTGGTG
TTAACAACAATCCGATGTACAAATTATTCTCTTTCTAGTTTCTATGAGCC
CTGGTCAAAAACAGAGTGTAGGAGCCAGAAACTATCATTATAATATCCAT
GATTTGAAACGCAAGCTGGATGAGGTACATATAAATATTGAGCTATCATA
CTTTAAAAATATTTACAAATTTGACATTCCCAACCTTTTGTTTTAAGCTT
GTTTCTATGCAAACTTAAATGAGTGCCCGAAGAAAATTGTGTGTACACTA
CAGTTATAATGTAGAATTAGAGTTATGTACTTGATAACCAAAATAATAGG
AACAATAGGAAAAAAGCCTTAATCTTTTGGTCGGCACAGTCTTGGTTTAT
TTAATACTGTATATAATTTCTGTAAGGAAGTTAAATATTTCAACAAGGAT
GATTTTATTTAGGCGGAAGAAGTTGACACGAATTCTCATCTTCATGGCAA
CTGGAATATAACAAACGCAAAATCAGCACTCCATGGTTTTCTAAACAAGC
GAAATATTCCTGCTGATTTTCAGTATTTTCAAGAAGGTCCTGATCATTCA
AGGTAAGCTTCAAAGATGCTCTAAAAATAAAGACATCAGATTCTGACTCT
GTAAATATGTAAAAATTTTAACTCTTCCTAGAAATGACTTAATTTAATAA
AAGATCTATCTATGGACTATAAAAGCAAAGTTATTTTTGAGATTGACTTT
GGAATTTTTACCTTATTCACAACAATTTAAATCCAGTTTTTTTATTCCTA
TTTCCCTTTACATATTCAATACAATAAGTTCTTTTGCTGTTTTTTTCTTG
ATAGATTTTTCCGTGCTAATCTCAGCTTCTTTGTGAATGAAGCAGGAAGA
ACATTGAATGGGAAAGGTACAGCTAGCTCAAAGAAACTGGCTGCTCAGAA
TTGTGCATTGAGTTTGGTGCGGCAACTTTTTCATCTTGGAGCAATCGAAG
CAGCAGAAGTTGGTCAAGTACAGCCAAAGAAAGTTAAAGTAGAAGAGGTT
T

Coding sequence (CDS) from alignment at sc0000421:21920..32370-

>TCONS_00022459 ID=TCONS_00022459|Name=TCONS_00022459|organism=Clytia hemisphaerica|type=CDS|length=5112bp|location=Sequence derived from alignment at sc0000421:21920..32370- (Clytia hemisphaerica)
ATTTTTCCGTGCTAATCTCAGCTTCTTTGTGAATGAAGCAGGAAGAACAT
TGAATGGGAAAGGTACAGCTAGCTCAAAGAAACTGGCTGCTCAGAATTGT
GCATTGAGTTTGGTGCGGCAACTTTTTCATCTTGGAGCAATCGAAGCAGC
AGAAGTTGGTCAAGTACAGCCAAAGAAAGTTAAAGTAGAAGAGGTTGCGG
AAGAAGTTGACACGAATTCTCATCTTCATGGCAACTGGAATATAACAAAC
GCAAAATCAGCACTCCATGGTTTTCTAAACAAGCGAAATATTCCTGCTGA
TTTTCAGTATTTTCAAGAAGGTCCTGATCATTCAAGTTTCTATGAGCCCT
GGTCAAAAACAGAGTGTAGGAGCCAGAAACTATCATTATAATATCCATGA
TTTGAAACGCAAGCTGGATGAGAATTTTTCAGTGCCTGCAGAACCTCAAA
CCAGTGGATCAACAGTTGGAGCACTAGGAGGATCAAATGTTGGGAGGTCT
CTTCCCAGCTCTGGTCCACTGGCTCCTCACCAGATTTCTCCTGGCCAGAG
TGGACAACAAGACCAAAAACCACCTCAAATGATTCAACAGGCCGCTCCAA
ATTTCCATTCAAGGTGTCAATTACATTGGAAATGGTGGTGGTAAAAACAA
GAAAGAAGGAGAAGCTGTGGCAGCCCATAACATGCTGAATCATATGGTCC
AAGCTGGAATCATACCAAGAAATGCTGTCCCTCCAAATATGCTTATGGCG
GGAGAAGTGAAAGGATTTTTGTATGGATGGGTTGGAAAAAACCTAAAAAC
AATACCTAAATTCGAACCGAACCCTAATGGTCCACACCGATTCAACTTCC
AGATTTTTCCGTGCTAATCTCAGCTTCTTTGTGAATGAAGCAGGAAGAAC
ATTGAATGGGAAAGGTACAGCTAGCTCAAAGAAACTGGCTGCTCAGAATT
GTGCATTGAGTTTGGTGCGGCAACTTTTTCATCTTGGAGCAATCGAAGCA
GCAGAAGTTGGTCAAGTACAGCCAAAGAAAGTTAAAGTAGAAGAGGTTGC
GGAAGAAGTTGACACGAATTCTCATCTTCATGGCAACTGGAATATAACAA
ACGCAAAATCAGCACTCCATGGTTTTCTAAACAAGCGAAATATTCCTGCT
GATTTTCAGTATTTTCAAGAAGGTCCTGATCATTCAAGTTTCTATGAGCC
CTGGTCAAAAACAGAGTGTAGGAGCCAGAAACTATCATTATAATATCCAT
GATTTGAAACGCAAGCTGGATGAGAATTTTTCAGTGCCTGCAGAACCTCA
AACCAGTGGATCAACAGTTGGAGCACTAGGAGGATCAAATGTTGGGAGGT
CTCTTCCCAGCTCTGGTCCACTGGCTCCTCACCAGATTTCTCCTGGCCAG
AGTGGACAACAAGACCAAAAACCACCTCAAATGATTCAACAGGCCGCTCC
AAATTTCCATTCAAGGTGTCAATTACATTGGAAATGGTGGTGGTAAAAAC
AAGAAAGAAGGAGAAGCTGTGGCAGCCCATAACATGCTGAATCATATGGT
CCAAGCTGGAATCATACCAAGAAATGCTGTCCCTCCAAATATGCTTATGG
CGGGAGAAGTGAAAGGATTTTTGTATGGATGGGTTGGAAAAAACCTAAAA
ACAATACCTAAATTCGAACCGAACCCTAATGGTCCACACCGATTCAACTT
CCAGATTTTTCCGTGCTAATCTCAGCTTCTTTGTGAATGAAGCAGGAAGA
ACATTGAATGGGAAAGGTACAGCTAGCTCAAAGAAACTGGCTGCTCAGAA
TTGTGCATTGAGTTTGGTGCGGCAACTTTTTCATCTTGGAGCAATCGAAG
CAGCAGAAGTTGGTCAAGTACAGCCAAAGAAAGTTAAAGTAGAAGAGGTT
GCGGAAGAAGTTGACACGAATTCTCATCTTCATGGCAACTGGAATATAAC
AAACGCAAAATCAGCACTCCATGGTTTTCTAAACAAGCGAAATATTCCTG
CTGATTTTCAGTATTTTCAAGAAGGTCCTGATCATTCAAGTTTCTATGAG
CCCTGGTCAAAAACAGAGTGTAGGAGCCAGAAACTATCATTATAATATCC
ATGATTTGAAACGCAAGCTGGATGAGAATTTTTCAGTGCCTGCAGAACCT
CAAACCAGTGGATCAACAGTTGGAGCACTAGGAGGATCAAATGTTGGGAG
GTCTCTTCCCAGCTCTGGTCCACTGGCTCCTCACCAGATTTCTCCTGGCC
AGAGTGGACAACAAGACCAAAAACCACCTCAAATGATTCAACAGGCCGCT
CCAAATTTCCATTCAAGGTGTCAATTACATTGGAAATGGTGGTGGTAAAA
ACAAGAAAGAAGGAGAAGCTGTGGCAGCCCATAACATGCTGAATCATATG
GTCCAAGCTGGAATCATACCAAGAAATGCTGTCCCTCCAAATATGCTTAT
GGCGGGAGAAGTGAAAGGATTTTTGTATGGATGGGTTGGAAAAAACCTAA
AAACAATACCTAAATTCGAACCGAACCCTAATGGTCCACACCGATTCAAC
TTCCAGATTTTTCCGTGCTAATCTCAGCTTCTTTGTGAATGAAGCAGGAA
GAACATTGAATGGGAAAGGTACAGCTAGCTCAAAGAAACTGGCTGCTCAG
AATTGTGCATTGAGTTTGGTGCGGCAACTTTTTCATCTTGGAGCAATCGA
AGCAGCAGAAGTTGGTCAAGTACAGCCAAAGAAAGTTAAAGTAGAAGAGG
TTGCGGAAGAAGTTGACACGAATTCTCATCTTCATGGCAACTGGAATATA
ACAAACGCAAAATCAGCACTCCATGGTTTTCTAAACAAGCGAAATATTCC
TGCTGATTTTCAGTATTTTCAAGAAGGTCCTGATCATTCAAGTTTCTATG
AGCCCTGGTCAAAAACAGAGTGTAGGAGCCAGAAACTATCATTATAATAT
CCATGATTTGAAACGCAAGCTGGATGAGAATTTTTCAGTGCCTGCAGAAC
CTCAAACCAGTGGATCAACAGTTGGAGCACTAGGAGGATCAAATGTTGGG
AGGTCTCTTCCCAGCTCTGGTCCACTGGCTCCTCACCAGATTTCTCCTGG
CCAGAGTGGACAACAAGACCAAAAACCACCTCAAATGATTCAACAGGCCG
CTCCAAATTTCCATTCAAGGTGTCAATTACATTGGAAATGGTGGTGGTAA
AAACAAGAAAGAAGGAGAAGCTGTGGCAGCCCATAACATGCTGAATCATA
TGGTCCAAGCTGGAATCATACCAAGAAATGCTGTCCCTCCAAATATGCTT
ATGGCGGGAGAAGTGAAAGGATTTTTGTATGGATGGGTTGGAAAAAACCT
AAAAACAATACCTAAATTCGAACCGAACCCTAATGGTCCACACCGATTCA
ACTTCCAGATTTTTCCGTGCTAATCTCAGCTTCTTTGTGAATGAAGCAGG
AAGAACATTGAATGGGAAAGGTACAGCTAGCTCAAAGAAACTGGCTGCTC
AGAATTGTGCATTGAGTTTGGTGCGGCAACTTTTTCATCTTGGAGCAATC
GAAGCAGCAGAAGTTGGTCAAGTACAGCCAAAGAAAGTTAAAGTAGAAGA
GGTTGCGGAAGAAGTTGACACGAATTCTCATCTTCATGGCAACTGGAATA
TAACAAACGCAAAATCAGCACTCCATGGTTTTCTAAACAAGCGAAATATT
CCTGCTGATTTTCAGTATTTTCAAGAAGGTCCTGATCATTCAAGTTTCTA
TGAGCCCTGGTCAAAAACAGAGTGTAGGAGCCAGAAACTATCATTATAAT
ATCCATGATTTGAAACGCAAGCTGGATGAGAATTTTTCAGTGCCTGCAGA
ACCTCAAACCAGTGGATCAACAGTTGGAGCACTAGGAGGATCAAATGTTG
GGAGGTCTCTTCCCAGCTCTGGTCCACTGGCTCCTCACCAGATTTCTCCT
GGCCAGAGTGGACAACAAGACCAAAAACCACCTCAAATGATTCAACAGGC
CGCTCCAAATTTCCATTCAAGGTGTCAATTACATTGGAAATGGTGGTGGT
AAAAACAAGAAAGAAGGAGAAGCTGTGGCAGCCCATAACATGCTGAATCA
TATGGTCCAAGCTGGAATCATACCAAGAAATGCTGTCCCTCCAAATATGC
TTATGGCGGGAGAAGTGAAAGGATTTTTGTATGGATGGGTTGGAAAAAAC
CTAAAAACAATACCTAAATTCGAACCGAACCCTAATGGTCCACACCGATT
CAACTTCCAGATTTTTCCGTGCTAATCTCAGCTTCTTTGTGAATGAAGCA
GGAAGAACATTGAATGGGAAAGGTACAGCTAGCTCAAAGAAACTGGCTGC
TCAGAATTGTGCATTGAGTTTGGTGCGGCAACTTTTTCATCTTGGAGCAA
TCGAAGCAGCAGAAGTTGGTCAAGTACAGCCAAAGAAAGTTAAAGTAGAA
GAGGTTGCGGAAGAAGTTGACACGAATTCTCATCTTCATGGCAACTGGAA
TATAACAAACGCAAAATCAGCACTCCATGGTTTTCTAAACAAGCGAAATA
TTCCTGCTGATTTTCAGTATTTTCAAGAAGGTCCTGATCATTCAAGTTTC
TATGAGCCCTGGTCAAAAACAGAGTGTAGGAGCCAGAAACTATCATTATA
ATATCCATGATTTGAAACGCAAGCTGGATGAGAATTTTTCAGTGCCTGCA
GAACCTCAAACCAGTGGATCAACAGTTGGAGCACTAGGAGGATCAAATGT
TGGGAGGTCTCTTCCCAGCTCTGGTCCACTGGCTCCTCACCAGATTTCTC
CTGGCCAGAGTGGACAACAAGACCAAAAACCACCTCAAATGATTCAACAG
GCCGCTCCAAATTTCCATTCAAGGTGTCAATTACATTGGAAATGGTGGTG
GTAAAAACAAGAAAGAAGGAGAAGCTGTGGCAGCCCATAACATGCTGAAT
CATATGGTCCAAGCTGGAATCATACCAAGAAATGCTGTCCCTCCAAATAT
GCTTATGGCGGGAGAAGTGAAAGGATTTTTGTATGGATGGGTTGGAAAAA
ACCTAAAAACAATACCTAAATTCGAACCGAACCCTAATGGTCCACACCGA
TTCAACTTCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012598XLOC_012598Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022459-proteinTCONS_00022459-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022459-exon-sc0000421-1575043694:31872..32370TCONS_00022459-exon-sc0000421-1575043694:31872..32370Clytia hemisphaericaexon
TCONS_00022459-exon-sc0000421-1575043694:29492..29635TCONS_00022459-exon-sc0000421-1575043694:29492..29635Clytia hemisphaericaexon
TCONS_00022459-exon-sc0000421-1575043694:24599..24776TCONS_00022459-exon-sc0000421-1575043694:24599..24776Clytia hemisphaericaexon
TCONS_00022459-exon-sc0000421-1575043694:22797..22882TCONS_00022459-exon-sc0000421-1575043694:22797..22882Clytia hemisphaericaexon
TCONS_00022459-exon-sc0000421-1575043694:22369..22508TCONS_00022459-exon-sc0000421-1575043694:22369..22508Clytia hemisphaericaexon
TCONS_00022459-exon-sc0000421-1575043694:21920..22116TCONS_00022459-exon-sc0000421-1575043694:21920..22116Clytia hemisphaericaexon
TCONS_00022459-exon-sc0000421-1510915933:31872..32370TCONS_00022459-exon-sc0000421-1510915933:31872..32370Clytia hemisphaericaexon
TCONS_00022459-exon-sc0000421-1510915933:29492..29635TCONS_00022459-exon-sc0000421-1510915933:29492..29635Clytia hemisphaericaexon
TCONS_00022459-exon-sc0000421-1510915933:24599..24776TCONS_00022459-exon-sc0000421-1510915933:24599..24776Clytia hemisphaericaexon
TCONS_00022459-exon-sc0000421-1510915933:22797..22882TCONS_00022459-exon-sc0000421-1510915933:22797..22882Clytia hemisphaericaexon
TCONS_00022459-exon-sc0000421-1510915933:22369..22508TCONS_00022459-exon-sc0000421-1510915933:22369..22508Clytia hemisphaericaexon
TCONS_00022459-exon-sc0000421-1510915933:21920..22116TCONS_00022459-exon-sc0000421-1510915933:21920..22116Clytia hemisphaericaexon
TCONS_00022459-exon-sc0000421-1491911889:31872..32370TCONS_00022459-exon-sc0000421-1491911889:31872..32370Clytia hemisphaericaexon
TCONS_00022459-exon-sc0000421-1491911889:29492..29635TCONS_00022459-exon-sc0000421-1491911889:29492..29635Clytia hemisphaericaexon
TCONS_00022459-exon-sc0000421-1491911889:24599..24776TCONS_00022459-exon-sc0000421-1491911889:24599..24776Clytia hemisphaericaexon
TCONS_00022459-exon-sc0000421-1491911889:22797..22882TCONS_00022459-exon-sc0000421-1491911889:22797..22882Clytia hemisphaericaexon
TCONS_00022459-exon-sc0000421-1491911889:22369..22508TCONS_00022459-exon-sc0000421-1491911889:22369..22508Clytia hemisphaericaexon
TCONS_00022459-exon-sc0000421-1491911889:21920..22116TCONS_00022459-exon-sc0000421-1491911889:21920..22116Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000421supercontigsc0000421:21920..32370 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.69434	2.59151	3.85879	3.9796	4.54669	3.20933	4.52416	5.21466	3.20772	3.74194	2.73027	2.3267	3.10249	2.97113	3.7344	4.7357	5.41198	5.27036	1.82614	1.9887	4.70466	4.62719	3.32731	4.34195	5.46484	5.54041	1.83962	1.42612	2.86108	3.18392
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014720dsRBD_dom
Blast
[Close]
BLAST of TCONS_00022459 vs. Swiss-Prot (Human)
Match: DHX9 (ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4)

HSP 1 Score: 139.813 bits (351), Expect = 4.092e-35
Identity = 97/277 (35.02%), Postives = 145/277 (52.35%), Query Frame = 2 
Query:  398 GEVKGFLYGWVGKNLKTIPKFEPNPNG---PHRFNFQISIQGVNYIXXXXXXXXXXXXAVAAHNMLNHMVQAGIIPRNAVPPNMLNFSVPAEP---QTSGSTVGALGGSNVGRSLPSS--GPLAPHQISPGQSGXXXXXXXXXXXXAAPISMSPGQKQSVGARNYHYNIHDLKRKLD---EAEEVDTNSHLHGNWNITNAKSALHGFLNKRNIPADFQYFQEGPDHSRFFRANLSFFVNEAGRTLNGKGTASSKKLAAQNCALSLVRQLFHLGAIEA 1195
            G+VK FLY W GK  K  P +E    G     +F  ++ ++G NY G G   NKK+ ++ AA + +N++V+   I    VP     F V + P    T  +T  A G       LP++  GPL PH     ++  +       +         PG     GA    Y     ++++    E+EEVD N+ LHGNW + NAK+ L+ +  K  I  +++Y Q GPDH+R F A ++ ++ + GR +  +   S+KKLAAQ+CALSLVRQL+HLG +EA
Sbjct:    2 GDVKNFLYAWCGKR-KMTPSYEIRAVGNKNRQKFMCEVQVEGYNYTGMGNSTNKKDAQSNAARDFVNYLVRINEIKSEEVPA----FGVASPPPLTDTPDTTANAEG------DLPTTMGGPLPPHLALKAENNSEVGASGYGV---------PGPTWDRGANLKDYYSRKEEQEVQATLESEEVDLNAGLHGNWTLENAKARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHLGVVEA 258
The following BLAST results are available for this feature:
BLAST of TCONS_00022459 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DHX94.092e-3535.02ATP-dependent RNA helicase A OS=Homo sapiens GN=DH... [more]
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