TCONS_00022459-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00022459-protein
Unique NameTCONS_00022459-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length284

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00022459-protein ID=TCONS_00022459-protein|Name=TCONS_00022459-protein|organism=Clytia hemisphaerica|type=polypeptide|length=284bp
MAGEVKGFLYGWVGKNLKTIPKFEPNPNGPHRFNFQISIQGVNYIGNGGG
KNKKEGEAVAAHNMLNHMVQAGIIPRNAVPPNMLNFSVPAEPQTSGSTVG
ALGGSNVGRSLPSSGPLAPHQISPGQSGQQDQKPPQMIQQAAPISMSPGQ
KQSVGARNYHYNIHDLKRKLDEAEEVDTNSHLHGNWNITNAKSALHGFLN
KRNIPADFQYFQEGPDHSRFFRANLSFFVNEAGRTLNGKGTASSKKLAAQ
NCALSLVRQLFHLGAIEAAEVGQVQPKKVKVEEV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012598XLOC_012598Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00022459TCONS_00022459Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014720dsRBD_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 156..176
NoneNo IPR availableGENE3D3.30.160.20coord: 3..155
e-value: 9.0E-9
score: 34.8
NoneNo IPR availableGENE3D3.30.160.20coord: 179..274
e-value: 8.6E-14
score: 51.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 89..153
NoneNo IPR availableCDDcd00048DSRMcoord: 190..260
e-value: 1.50614E-8
score: 49.1931
NoneNo IPR availableCDDcd00048DSRMcoord: 6..68
e-value: 1.27672E-5
score: 40.7187
NoneNo IPR availableSUPERFAMILY54768dsRNA-binding domain-likecoord: 168..269
NoneNo IPR availableSUPERFAMILY54768dsRNA-binding domain-likecoord: 5..79
IPR014720Double-stranded RNA-binding domainSMARTSM00358DRBM_3coord: 191..261
e-value: 1.2E-9
score: 48.0
coord: 5..69
e-value: 5.2E-6
score: 36.0
IPR014720Double-stranded RNA-binding domainPFAMPF00035dsrmcoord: 191..260
e-value: 1.8E-8
score: 34.8
coord: 6..67
e-value: 8.8E-5
score: 23.0
IPR014720Double-stranded RNA-binding domainPROSITEPS50137DS_RBDcoord: 190..262
score: 13.276
IPR014720Double-stranded RNA-binding domainPROSITEPS50137DS_RBDcoord: 16..70
score: 11.747

Blast
[Close]
BLAST of TCONS_00022459-protein vs. Swiss-Prot (Human)
Match: DHX9 (ATP-dependent RNA helicase A OS=Homo sapiens GN=DHX9 PE=1 SV=4)

HSP 1 Score: 154.451 bits (389), Expect = 3.334e-42
Identity = 103/299 (34.45%), Postives = 153/299 (51.17%), Query Frame = 0 
Query:    3 GEVKGFLYGWVGKNLKTIPKFEPNPNG---PHRFNFQISIQGVNYIGNGGGKNKKEGEAVAAHNMLNHMVQAGIIPRNAVPPNMLNFSVPAEP---QTSGSTVGALGGSNVGRSLPSS--GPLAPHQISPGQSGQQDQKPPQMIQQAAPISMSPGQKQSVGARNYHYNIHDLKRKLD---EAEEVDTNSHLHGNWNITNAKSALHGFLNKRNIPADFQYFQEGPDHSRFFRANLSFFVNEAGRTLNGKGTASSKKLAAQNCALSLVRQLFHLGAIEA-------AEVGQVQPKKVKVEE 283
            G+VK FLY W GK  K  P +E    G     +F  ++ ++G NY G G   NKK+ ++ AA + +N++V+   I    VP     F V + P    T  +T  A G       LP++  GPL PH     ++  +           A     PG     GA    Y     ++++    E+EEVD N+ LHGNW + NAK+ L+ +  K  I  +++Y Q GPDH+R F A ++ ++ + GR +  +   S+KKLAAQ+CALSLVRQL+HLG +EA        E   V+P KV + +
Sbjct:    2 GDVKNFLYAWCGKR-KMTPSYEIRAVGNKNRQKFMCEVQVEGYNYTGMGNSTNKKDAQSNAARDFVNYLVRINEIKSEEVPA----FGVASPPPLTDTPDTTANAEG------DLPTTMGGPLPPHLALKAENNSE---------VGASGYGVPGPTWDRGANLKDYYSRKEEQEVQATLESEEVDLNAGLHGNWTLENAKARLNQYFQKEKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHLGVVEAYSGLTKKKEGETVEPYKVNLSQ 280
The following BLAST results are available for this feature:
BLAST of TCONS_00022459-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DHX93.334e-4234.45ATP-dependent RNA helicase A OS=Homo sapiens GN=DH... [more]
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