TCONS_00022154 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022154
Unique NameTCONS_00022154
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2648

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022154 ID=TCONS_00022154|Name=TCONS_00022154|organism=Clytia hemisphaerica|type=transcript|length=2648bp
AGCAATTTTCTTGTGCAGAAATTTATGTAGCATGGCAAGGCTTGAGATTT
TATGCAGGTTGTGCAATTAAAATCCTTTCAATCATTGTTGAAGGACCATT
CGTTGTTGATGAAACGAGCTGCTTTACGCTGTACCATTTCCAGATCAGCG
TATAGACCTGCATCTGAGGGTCCTGTAGGGTTTCAAACACTGGAGGCATA
CATGACAATTGGTAAAATAAAATACAAGACTTTCTTTGAGGTCAAGACCG
CTCTTAcacaaagatttgaaaagctCCTAAGGGGCCTACAGTTgaactct
tggatgggaaagcAACTTATATCTCATCTGAAACCTGTGACCTGTATATG
AGTCAGGTAGAAACTAAATTTATCAGAAATTCCATACAAATGCTGTGCTG
CAAATAACGACTGTTGATCGGTAATTACCggacactttttggtcattccC
TAAAACCCCTGTCAGGGGCCTTAGAGTGCCCCCAGAACCCCACTCCATTT
TTTCTTGCTATACTCGAAAAATCCGGCCAAGTCACAATTCCTTATTTGCA
GCAAAATTGAATGTTTCGATTGGGTAAGAAAGAATTGATTTGAACGTTGT
AGCctttgataataaaaaacaacagtagaaataaagcaaacatACTTTGA
AGAAAGATACCAATAGACCTTATCATAAATTAcattacgaacatcacttg
cctcgtttcgaaattattgccatggtgattaacgcCTAGCGGATTTTAtt
tactttctattcataaaaatatcatttaatgtctcaagggacataatcac
catggtaattgtttgaatacgaggcaagtgatggtTGGGATGTAAtatat
gaaaaggtctattccgaCACTTAATATGGCCCGTGATAATAATGGAAAAA
TAACATATTGTTTGggttattttaaaattaataacCCTTCCTTCGCTCAC
TACATTGAGACCAAttcgaaatattttcaatgaacATTCGGGTGATCTAC
CTTCATACCACCATGTTATTTCTAGTACTtccctttcaataaaaaaaatc
ctgAACCCAGTACTAAAATTACGTCAGTTACCTAAAGGTATgccaaaaca
tttttcaaaattttctgacaatatcatcatttttttttctaggtAAGTGT
GCAGTAGTGAAGACTTCTACAAGACAAACCTACTTTCTACCGGTTATTGG
TCTAGTTGATGCGGAAAACCTGAAACCTGGCGATCTGGTTGGTGTTAATA
AAGATTCATATTTGATCTTGGAAACATTACCCTCAGAATATGATGCTCGT
GTCAAAGctaTGGAGGTTGATGAGAGGCCGACTGAACAATACAGTGACAT
CGGTGGGCTAGATACACAAATTCAAGAACTGATCGAAGCTATCGTCCTCC
CAATGACGCATCAAGAACGATTCGAACGTCTAGGTGTTGCACCACCCAAA
GGTGTTCTTCTGTTTGGCCCGCCTGGTACCGGAAAAACTCTACTAGCAAG
GGCGTGTGCCGCCCAAACAAAAGCTACGTTCTTGAAATTGGCTGGTCCAC
AACTTGTACAAATGTTTATCGGAGATGGTGCGAAATTGGTGAGAGATGCA
TTCGCACTTGCCAAAGAGAAGCTTCCAGCTATCATCTTTATTGACGAATT
GGATGCTATCGGTACAAAACGTTTCGACAGCGAGAAAGCTGGCGACCGTG
AAGTTCAACGTACTATGTTGGAGCTGTTGAATCAATTAGATGGGTTCAGC
TCTACATCACAAATTAAAgttATCGCAGCAACCAATCGTGTGGACATCTT
GGATCCAGCTTTACTTCGATCCGGACGTTTAGATAGAAAGATCGAATTCC
CCAATCCTACGGAGGAAGCACGTGCTCGTATTTTGCAAATCCATTCCAGA
AAAATGAATTTCAGCTCTAACGTCAATTTCGAAGAGTTGGCGCGTTGTAC
GGAAGATTTTAACGGAGCACAACTGAAAGCTGTATGTGTGGAAGCCGGTA
TGATTGCGTTGAGAAGGGAAGCTACAGAACTTCAACATGAAGATTATATG
GACGGTATCATGGAGGTacaatccaaaaagaaaaacaatcttCAATATTA
CGCTTAAAACGTTTTTCTCCATTCATTATAATAAAGATTGTTCCATTTTT
GCTAACGGTGGCATTTTGAATTAGGCGTAAATTCgtaaattcaaaaatat
aagTTTCAATAGTAGTTCTGAATTTTCACGATTCTGGCTTAGCTTACCGG
AGGTTTGAATAAATTTTCGAATAAAGAAATTTGACAAGTTTTTGGACGGA
TTCGGTGCGACTTTTACCAACAGAACATATAAGAGAAGAACATTTAAGGG
CATGTTTCCCTAGATCATTCGGTACTTGAAAGTAGAAAATCTAGTTTCAT
TGAATTAGTATTTTTTTTggttaactcgtgttttttatcAGTAGCTTAAC
ATTATTTACAGAAACAATTTCGATGTCAAATATGCGGCATCagtttttga
attgaaaagaaaattgaaaacatacAACTCTATTTGttatcttttaaatt
ttgtttcagCTTCATCCGAATCGCAGGACCTCTACAAAATTCGCTGGTAC
AATAATAGTTGAAATATATAGATATTTATGTACACTCTAAAATTCGCG
Run BLAST on NCBI

protein sequence of TCONS_00022154-protein

>TCONS_00022154-protein ID=TCONS_00022154-protein|Name=TCONS_00022154-protein|organism=Clytia hemisphaerica|type=polypeptide|length=265bp
MEVDERPTEQYSDIGGLDTQIQELIEAIVLPMTHQERFERLGVAPPKGVL
LFGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFAL
AKEKLPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTS
QIKVIAATNRVDILDPALLRSGRLDRKIEFPNPTEEARARILQIHSRKMN
FSSNVNFEELARCTEDFNGAQLKAVCVEAGMIALRREATELQHEDYMDGI
MEVQSKKKNNLQYYA
Run BLAST on NCBI

transcript from alignment at sc0000406:133195..138917+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022154 ID=TCONS_00022154|Name=TCONS_00022154|organism=Clytia hemisphaerica|type=transcript|length=5723bp|location=Sequence derived from alignment at sc0000406:133195..138917+ (Clytia hemisphaerica)
AGCAATTTTCTTGTGCAGAAATTTATGTAGCATGGCAAGGCTTGAGATTT
TATGCAGGTTGTGCAATTAAAATCCTTTCAATCATTGTTGAAGGACCATT
CGTTGTTGATGAAACGAGCTGCTTTACGCTGTACCATTTCCAGATCAGCG
TATAGACCTGCATCTGAGGGTCCTGTAGGGTTTCAAACACTGGAGGCATA
CATGACAATTGGTAAAATAAAATACAAGACTTTCTTTGAGGTCAAGACCG
CTCTTAcacaaagatttgaaaagctCCTAAGGGGCCTACAGTTgaactct
tggatgggaaagcAACTTATATCTCATCTGAAACCTGTGACCTGTATATG
AGTCAGGTAGAAACTAAATTTATCAGAAATTCCATACAAATGCTGTGCTG
CAAATAACGACTGTTGATCGGTAATTACCggacactttttggtcattccC
TAAAACCCCTGTCAGGGGCCTTAGAGTGCCCCCAGAACCCCACTCCATTT
TTTCTTGCTATACTCGAAAAATCCGGCCAAGTCACAATTCCTTATTTGCA
GCAAAATTGAATGTTTCGATTGGGTAAGAAAGAATTGATTTGAACGTTGT
AGCctttgataataaaaaacaacagtagaaataaagcaaacatACTTTGA
AGAAAGATACCAATAGACCTTATCATAAATTAcattacgaacatcacttg
cctcgtttcgaaattattgccatggtgattaacgcCTAGCGGATTTTAtt
tactttctattcataaaaatatcatttaatgtctcaagggacataatcac
catggtaattgtttgaatacgaggcaagtgatggtTGGGATGTAAtatat
gaaaaggtctattccgaCACTTAATATGGCCCGTGATAATAATGGAAAAA
TAACATATTGTTTGggttattttaaaattaataacCCTTCCTTCGCTCAC
TACATTGAGACCAAttcgaaatattttcaatgaacATTCGGGTGATCTAC
CTTCATACCACCATGTTATTTCTAGTACTtccctttcaataaaaaaaatc
ctgAACCCAGTACTAAAATTACGTCAGTTACCTAAAGGTATgccaaaaca
tttttcaaaattttctgacaatatcatcatttttttttctaggtAAGTGT
GCAGTAGTGAAGACTTCTACAAGACAAACCTACTTTCTACCGGTTATTGG
TCTAGTTGATGCGGAAAACCTGAAACCTGGCGATCTGGTTGGTGTTAATA
AAGATTCATATTTGATCTTGGAAACATTACCCTCAGAATATGATGCTCGT
GTCAAAGGTAGGCAAACCACTCATTCTCTTATAGTCAATTCTTATTATTT
TCCAGTTTTGGACGTGTTAAAAGAATCTTTATCGCCCGTTATGAGGCATT
GACTCGTGTAAACTTGAGCTGTGTACCCAACACCATGAGAACTCTTTAGA
AAAGTAAAATCTAACCTTAAAATCCTATTTgtatggaaaatttgaaaagt
atcaCCCCATATTTTAAGttaaaatgtattttaaaaACTCCATAAAATTT
AGGATATTCCCTATACCTCGAGACGtcaaaaactatcaaaattcttttgt
gGGTCAACACATTGCATGCATTccccctgagcttagggggctaaaccatt
tttgcttgattgagCGCTGTATTATTTTCTGGGGGCTAGCTGGCTAGGGA
GTTGAGTGTCGAGTAATGGAACTGGAGACAGAGCTGATATAACAGTAATG
CAAGCTAAATTTCTTcgatattttgctttgtgagGAAGGGGgttacattt
ttaaaatttcgccGGGGGCTATGttccttagccccccccccccccNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGAAA
AATGCTGGGAGTTGGACCCCTCTGCATTCTATGCACCAGTGGTTTAGTAA
TAGAAATCCTAAAAGAATCAGCTCATTTAAAAATCACTGCATCATATCAT
GATTACTAGGGCATTACAAATGGCCTCTGGCCATTAATTTATTAGAGAAT
CATTATTAGTCTCAAATTCCTATTCTTTTCAACACCACAGTGAAATGACG
TTTATATTAGGTGAACTGATTCTATGAGTTTCCATCCATTCATCTCTTTA
TCTTAATATGCTCCTTCTCTTCTTTCTATCCAACACACTTTCCTTACAAA
TGACCCCCTTAGTCATTGAaccttttaaaaatttatatatGGTAAATCAT
TGGTTGTTCAGAGAacactttttttgtaaataaactcTTTACCAGCGTcc
gaattttttctttttcagctaTGGAGGTTGATGAGAGGCCGACTGAACAA
TACAGTGACATCGGTGGGCTAGATACACAAATTCAAGAACTGATCGAAGC
TATCGTCCTCCCAATGACGCATCAAGAACGATTCGAACGTCTAGGTATTT
ATTCTGTTTAAAATGTTCTCATGGTAATCATACTattcttttattgtttg
aaaaaaattgtataatttGAACGAACACCCTGTTCAATATGAACACCCTG
TTCAATACGAACACCCTGTTCAATATGGACACATCTTCTCAAAGTCTCct
cagaaaattttgagatcGTACCTTATCCGGTATATTGTTGTAGAGATTTA
TTATTGTCTGGATAGCAACTTAAAAACCAAAACTTGTGTCCGCATCTGGT
TCAAATTGACAAGGGAAATTTTAGTCAGGGGAAATTATGTACACTTAACA
TTATGTTCAATGAAAATGTATTGTTTAATTTCTGCATCAAATATTTATCT
TAGAAAAAAATCTGTCTATGTTCTGTTCAATTCAGGTGTTGCACCACCCA
AAGGTGTTCTTCTGTTTGGCCCGCCTGGTACCGGAAAAACTCTACTAGCA
AGGGCGTGTGCCGCCCAAACAAAAGCTACGTTCTTGAAATTGGCTGGTCC
ACAACTTGTACAAATGTTTATCGGAGATGGTGCGAAATTGGTGAGAGATG
CATTCGCACTTGCCAAAGAGAAGCTTCCAGCTATCATCTTTATTGACGAA
TTGGATGCTATCGGTACAAAACGTTTCGACAGCGAGAAAGCTGGCGACCG
TGAAGTTCAACGTACTATGTTGGAGCTGTTGAATCAATTAGATGGGTTCA
GCTCTACATCACAAATTAAAGTAAGAtgatttttgcgtttttttttttat
ttataagacaGAAAGGGAAAAGTGTCAATCACCCAAGTTTGGGTAGTTTT
GGGTGATAAAATGGTAAAATACGCTGCACCTTTTCGCATTCATTAGTGTT
TTAGATATAAGCACTGCGGTATATATCCCCCAAACGTAAGGGACCCCCAA
TAGTAGGTTTTGTTTGATTCAAATGACAATTGAAACCTGTAGATGAGTCG
AAATGGGGCGATTTTTGATTACTTTGGTTGGTTAGTATTTCTTCTTtaag
aaaaacatgtttttggTTGTCTGAAACATTTTGGAAGTAGCCTAATCTTC
TATATGAAAAATTGTTCATCTAAATCTGCCAAAAATTGCATAGAACTCTC
TTTAACTCCTTAGACGTCGAAATTAAGTTATGAAGAAGGAGTATAGGAAG
CTTTCTATAATTCCTAAGAACATATCCCAAAATCCAGGTGAGAATTTGAA
TGAGCATTCTCGGGCCCATAAATTGacattaaaaaactaaaaattctcAA
GATGGGTAGTAGATAAAAGCTGTGGAATTCTTTTGCTGCCGACATGACAT
AGTTTGCAACGGAAAATTACATTTATatacaaattattttttctgaatca
gcatttatggcaaaaattttgaaaaatatttcaggttATCGCAGCAACCA
ATCGTGTGGACATCTTGGATCCAGCTTTACTTCGATCCGGACGTTTAGAT
AGAAAGATCGAATTCCCCAATCCTACGGAGGAAGCACGTGCTCGTATTTT
GCAAATCCATTCCAGAAAAATGAATTTCAGCTCTAACGTATGTACTTTTG
AACTCTGATACACCTTTATCGACGCGGTCCGCTTTTCAGGggactggtaa
tgaatttacaaggaaatTTTTTCTCGTTAAAACCTTCTTAATGAGAGAAT
TTCCCTGAGATTCTGGAGTTGCAGGACGTGGATTGCTTAGCATTCGAAAA
GTTCAATCTAAATGACGGGAGTATCTGGTTTCTTTAAGCGGGTTCTTACA
TGGTTCTTACGTCagaatttcattgttttgataTCTTTCTGTTTAAGGGC
TTtgaccatagtcgaaaaattgattttagtatttgaacataaaagttatg
tttaggttctttaacacttttaacaaagaattgcctttacaaattgcttt
taaatcaaatcccttaagagtaattaagaatttaattgcaaaaatgacgc
tgtgaactttaaaaagacgttaataatatgttgcattgccttcttttata
aaaaagtgctaaaagttttaatgggtaattaacctttttgttttgaagtt
ttatTAAACTGTCCgcgaagaattgaactgtttcaaatttttcggaaaat
ttttctaaattaatgcatcagaagttatggctgtttttctatgaaaaaat
atacaccatctaccgcaaaaaaaattcaaaaagttttttcttcgccgaaa
atgcTCTTCatagttgaaatactcttcttcgcaaaagtcttcattttctt
cttcgtctaattttttcattgcgattcttaaattttcagactcaaggata
aaTTGGCCtaaaagaaaatgtataacatgccacagttttgtatGCTACAT
taagtagaaatttatattttgtacgtggcaaatattaaaaattcactatg
gtcagagcccttaatttaaCATGAGTATCTAGACTTGACAAACGGTAGAG
AATACGTGAATTGATATCCTTTAACTTAATCTCTTAATCTCTTCAGGTCA
ATTTCGAAGAGTTGGCGCGTTGTACGGAAGATTTTAACGGAGCACAACTG
AAAGCTGTATGTGTGGAAGCCGGTATGATTGCGTTGAGAAGGGAAGCTAC
AGAACTTCAACATGAAGATTATATGGACGGTATCATGGAGGTacaatcca
aaaagaaaaacaatcttCAATATTACGCTTAAAACGTTTTTCTCCATTCA
TTATAATAAAGATTGTTCCATTTTTGCTAACGGTGGCATTTTGAATTAGG
CGTAAATTCgtaaattcaaaaatataagTTTCAATAGTAGTTCTGAATTT
TCACGATTCTGGCTTAGCTTACCGGAGGTTTGAATAAATTTTCGAATAAA
GAAATTTGACAAGTTTTTGGACGGATTCGGTGCGACTTTTACCAACAGAA
CATATAAGAGAAGAACATTTAAGGGCATGTTTCCCTAGATCATTCGGTAC
TTGAAAGTAGAAAATCTAGTTTCATTGAATTAGTATTTTTTTTggttaac
tcgtgttttttatcAGTAGCTTAACATTATTTACAGAAACAATTTCGATG
TCAAATATGCGGCATCagtttttgaattgaaaagaaaattgaaaacatac
AACTCTATTTGttatcttttaaattttgtttcagCTTCATCCGAATCGCA
GGACCTCTACAAAATTCGCTGGTACAATAATAGTTGAAATATATAGATAT
TTATGTACACTCTAAAATTCGCG

Coding sequence (CDS) from alignment at sc0000406:133195..138917+

>TCONS_00022154 ID=TCONS_00022154|Name=TCONS_00022154|organism=Clytia hemisphaerica|type=CDS|length=3192bp|location=Sequence derived from alignment at sc0000406:133195..138917+ (Clytia hemisphaerica)
aTGGAGGTTGATGAGAGGCCGACTGAACAATACAGTGACATCGGTGGGCT
AGATACACAAATTCAAGAACTGATCGAAGCTATCGTCCTCCCAATGACGC
ATCAAGAACGATTCGAACGTCTAGGTGTTGCACCACCCAAAGGTGTTCTT
CTGTTTGGCCCGCCTGGTACCGGAAAAACTCTACTAGCAAGGGCGTGTGC
CGCCCAAACAAAAGCTACGTTCTTGAAATTGGCTGGTCCACAACTTGTAC
AAATGTTTATCGGAGATGGTGCGAAATTGGTGAGAGATGCATTCGCACTT
GCCAAAGAGAAGCTTCCAGCTATCATCTTTATTGACGAATTGGATGCTAT
CGGTACAAAACGTTTCGACAGCGAGAAAGCTGGCGACCGTGAAGTTCAAC
GTACTATGTTGGAGCTGTTGAATCAATTAGATGGGTTCAGCTCTACATCA
CAAATTAAAgttATCGCAGCAACCAATCGTGTGGACATCTTGGATCCAGC
TTTACTTCGATCCGGACGTTTAGATAGAAAGATCGAATTCCCCAATCCTA
CGGAGGAAGCACGTGCTCGTATTTTGCAAATCCATTCCAGAAAAATGAAT
TTCAGCTCTAACGTCAATTTCGAAGAGTTGGCGCGTTGTACGGAAGATTT
TAACGGAGCACAACTGAAAGCTGTATGTGTGGAAGCCGGTATGATTGCGT
TGAGAAGGGAAGCTACAGAACTTCAACATGAAGATTATATGGACGGTATC
ATGGAGGTacaatccaaaaagaaaaacaatcttCAATATTACGCTTAAaT
GGAGGTTGATGAGAGGCCGACTGAACAATACAGTGACATCGGTGGGCTAG
ATACACAAATTCAAGAACTGATCGAAGCTATCGTCCTCCCAATGACGCAT
CAAGAACGATTCGAACGTCTAGGTGTTGCACCACCCAAAGGTGTTCTTCT
GTTTGGCCCGCCTGGTACCGGAAAAACTCTACTAGCAAGGGCGTGTGCCG
CCCAAACAAAAGCTACGTTCTTGAAATTGGCTGGTCCACAACTTGTACAA
ATGTTTATCGGAGATGGTGCGAAATTGGTGAGAGATGCATTCGCACTTGC
CAAAGAGAAGCTTCCAGCTATCATCTTTATTGACGAATTGGATGCTATCG
GTACAAAACGTTTCGACAGCGAGAAAGCTGGCGACCGTGAAGTTCAACGT
ACTATGTTGGAGCTGTTGAATCAATTAGATGGGTTCAGCTCTACATCACA
AATTAAAgttATCGCAGCAACCAATCGTGTGGACATCTTGGATCCAGCTT
TACTTCGATCCGGACGTTTAGATAGAAAGATCGAATTCCCCAATCCTACG
GAGGAAGCACGTGCTCGTATTTTGCAAATCCATTCCAGAAAAATGAATTT
CAGCTCTAACGTCAATTTCGAAGAGTTGGCGCGTTGTACGGAAGATTTTA
ACGGAGCACAACTGAAAGCTGTATGTGTGGAAGCCGGTATGATTGCGTTG
AGAAGGGAAGCTACAGAACTTCAACATGAAGATTATATGGACGGTATCAT
GGAGGTacaatccaaaaagaaaaacaatcttCAATATTACGCTTAAaTGG
AGGTTGATGAGAGGCCGACTGAACAATACAGTGACATCGGTGGGCTAGAT
ACACAAATTCAAGAACTGATCGAAGCTATCGTCCTCCCAATGACGCATCA
AGAACGATTCGAACGTCTAGGTGTTGCACCACCCAAAGGTGTTCTTCTGT
TTGGCCCGCCTGGTACCGGAAAAACTCTACTAGCAAGGGCGTGTGCCGCC
CAAACAAAAGCTACGTTCTTGAAATTGGCTGGTCCACAACTTGTACAAAT
GTTTATCGGAGATGGTGCGAAATTGGTGAGAGATGCATTCGCACTTGCCA
AAGAGAAGCTTCCAGCTATCATCTTTATTGACGAATTGGATGCTATCGGT
ACAAAACGTTTCGACAGCGAGAAAGCTGGCGACCGTGAAGTTCAACGTAC
TATGTTGGAGCTGTTGAATCAATTAGATGGGTTCAGCTCTACATCACAAA
TTAAAgttATCGCAGCAACCAATCGTGTGGACATCTTGGATCCAGCTTTA
CTTCGATCCGGACGTTTAGATAGAAAGATCGAATTCCCCAATCCTACGGA
GGAAGCACGTGCTCGTATTTTGCAAATCCATTCCAGAAAAATGAATTTCA
GCTCTAACGTCAATTTCGAAGAGTTGGCGCGTTGTACGGAAGATTTTAAC
GGAGCACAACTGAAAGCTGTATGTGTGGAAGCCGGTATGATTGCGTTGAG
AAGGGAAGCTACAGAACTTCAACATGAAGATTATATGGACGGTATCATGG
AGGTacaatccaaaaagaaaaacaatcttCAATATTACGCTTAAaTGGAG
GTTGATGAGAGGCCGACTGAACAATACAGTGACATCGGTGGGCTAGATAC
ACAAATTCAAGAACTGATCGAAGCTATCGTCCTCCCAATGACGCATCAAG
AACGATTCGAACGTCTAGGTGTTGCACCACCCAAAGGTGTTCTTCTGTTT
GGCCCGCCTGGTACCGGAAAAACTCTACTAGCAAGGGCGTGTGCCGCCCA
AACAAAAGCTACGTTCTTGAAATTGGCTGGTCCACAACTTGTACAAATGT
TTATCGGAGATGGTGCGAAATTGGTGAGAGATGCATTCGCACTTGCCAAA
GAGAAGCTTCCAGCTATCATCTTTATTGACGAATTGGATGCTATCGGTAC
AAAACGTTTCGACAGCGAGAAAGCTGGCGACCGTGAAGTTCAACGTACTA
TGTTGGAGCTGTTGAATCAATTAGATGGGTTCAGCTCTACATCACAAATT
AAAgttATCGCAGCAACCAATCGTGTGGACATCTTGGATCCAGCTTTACT
TCGATCCGGACGTTTAGATAGAAAGATCGAATTCCCCAATCCTACGGAGG
AAGCACGTGCTCGTATTTTGCAAATCCATTCCAGAAAAATGAATTTCAGC
TCTAACGTCAATTTCGAAGAGTTGGCGCGTTGTACGGAAGATTTTAACGG
AGCACAACTGAAAGCTGTATGTGTGGAAGCCGGTATGATTGCGTTGAGAA
GGGAAGCTACAGAACTTCAACATGAAGATTATATGGACGGTATCATGGAG
GTacaatccaaaaagaaaaacaatcttCAATATTACGCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012425XLOC_012425Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022154-exon-sc0000406-1491911889:133195..134501TCONS_00022154-exon-sc0000406-1491911889:133195..134501Clytia hemisphaericaexon
TCONS_00022154-exon-sc0000406-1510915933:133195..134501TCONS_00022154-exon-sc0000406-1510915933:133195..134501Clytia hemisphaericaexon
TCONS_00022154-exon-sc0000406-1575043694:133195..134501TCONS_00022154-exon-sc0000406-1575043694:133195..134501Clytia hemisphaericaexon
TCONS_00022154-exon-sc0000406-1491911889:135563..135688TCONS_00022154-exon-sc0000406-1491911889:135563..135688Clytia hemisphaericaexon
TCONS_00022154-exon-sc0000406-1510915933:135563..135688TCONS_00022154-exon-sc0000406-1510915933:135563..135688Clytia hemisphaericaexon
TCONS_00022154-exon-sc0000406-1575043694:135563..135688TCONS_00022154-exon-sc0000406-1575043694:135563..135688Clytia hemisphaericaexon
TCONS_00022154-exon-sc0000406-1491911889:136080..136414TCONS_00022154-exon-sc0000406-1491911889:136080..136414Clytia hemisphaericaexon
TCONS_00022154-exon-sc0000406-1510915933:136080..136414TCONS_00022154-exon-sc0000406-1510915933:136080..136414Clytia hemisphaericaexon
TCONS_00022154-exon-sc0000406-1575043694:136080..136414TCONS_00022154-exon-sc0000406-1575043694:136080..136414Clytia hemisphaericaexon
TCONS_00022154-exon-sc0000406-1491911889:137079..137231TCONS_00022154-exon-sc0000406-1491911889:137079..137231Clytia hemisphaericaexon
TCONS_00022154-exon-sc0000406-1510915933:137079..137231TCONS_00022154-exon-sc0000406-1510915933:137079..137231Clytia hemisphaericaexon
TCONS_00022154-exon-sc0000406-1575043694:137079..137231TCONS_00022154-exon-sc0000406-1575043694:137079..137231Clytia hemisphaericaexon
TCONS_00022154-exon-sc0000406-1491911889:138191..138917TCONS_00022154-exon-sc0000406-1491911889:138191..138917Clytia hemisphaericaexon
TCONS_00022154-exon-sc0000406-1510915933:138191..138917TCONS_00022154-exon-sc0000406-1510915933:138191..138917Clytia hemisphaericaexon
TCONS_00022154-exon-sc0000406-1575043694:138191..138917TCONS_00022154-exon-sc0000406-1575043694:138191..138917Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022154-proteinTCONS_00022154-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000406supercontigsc0000406:133195..138917 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
89.7463	88.2048	76.0445	71.4438	102.291	77.4537	97.4841	108.987	105.404	101.803	96.346	84.9775	84.162	94.6679	71.6198	82.7906	85.5254	84.85	38.3903	42.5223	67.6211	66.8767	63.5773	59.7071	126.149	126.601	72.9576	73.9732	58.5245	52.433
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003593AAA+_ATPase
IPR00593726S_Psome_P45
IPR003959ATPase_AAA_core
IPR003960ATPase_AAA_CS
IPR027417P-loop_NTPase
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0030163protein catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0005524ATP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030163 protein catabolic process
cellular_component GO:0005737 cytoplasm
molecular_function GO:0005524 ATP binding
molecular_function GO:0016787 hydrolase activity
Blast
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BLAST of TCONS_00022154 vs. Swiss-Prot (Human)
Match: PRS6A (26S proteasome regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1 SV=3)

HSP 1 Score: 600.127 bits (1546), Expect = 0.000e+0
Identity = 285/321 (88.79%), Postives = 304/321 (94.70%), Query Frame = 2 
Query: 1142 GKCAVVKTSTRQTYFLPVIGLVDAENLKPGDLVGVNKDSYLILETLPSEYDARVKAMEVDERPTEQYSDIGGLDTQIQELIEAIVLPMTHQERFERLGVAPPKGVLLFGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKLPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSTSQIKVIAATNRVDILDPALLRSGRLDRKIEFPNPTEEARARILQIHSRKMNFSSNVNFEELARCTEDFNGAQLKAVCVEAGMIALRREATELQHEDYMDGIMEVQSKKKNNLQYYA 2104
            GKCAV+KTSTRQTYFLPVIGLVDAE LKPGDLVGVNKDSYLILETLP+EYD+RVKAMEVDERPTEQYSDIGGLD QIQEL+EAIVLPM H+E+FE LG+ PPKGVL++GPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEK P+IIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGF   +Q+KVIAATNRVDILDPALLRSGRLDRKIEFP P EEARARI+QIHSRKMN S +VN+EELARCT+DFNGAQ KAVCVEAGMIALRR ATEL HEDYM+GI+EVQ+KKK NLQYYA
Sbjct:  119 GKCAVIKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPSIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFQPNTQVKVIAATNRVDILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYMEGILEVQAKKKANLQYYA 439
The following BLAST results are available for this feature:
BLAST of TCONS_00022154 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRS6A0.000e+088.7926S proteasome regulatory subunit 6A OS=Homo sapie... [more]
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