TCONS_00022085 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022085
Unique NameTCONS_00022085
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length620

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022085 ID=TCONS_00022085|Name=TCONS_00022085|organism=Clytia hemisphaerica|type=transcript|length=620bp
ATTTCGACAAGCTGGCTATCAAATGAATGGTATTTATCGTCTTAATGGCC
CTGGATTCAACAGACCTCGTGTCTTTTGTGACCAAACAACCCGAAATGGT
GGCTAGACCACCTTTTTACGTAAGTGCGACGGGTCTACGAATTTCAAACA
AAACTGGATTGGATACAAATTTGGCTTCGGCAAACTGGCAAATGAATTCT
GGCTTGGTAATGAAATAGTCCATCAACTAACAAAGCCATCTTCTGCCCCT
AAGAAGTCTGAGTTATTGATCAACATGGTAACAAAGGAGAAGAACCAAAC
TATCTTTGTTAAATTCGATCAGTTCAGAATAGGGAATGAGACGAGTAAAT
ACACTATGAAAATCAGTGGACAATATTCTGGTAATGCATCAGGCATAAGC
ACGTTCTTGTCATTCAACAAcaatatgaaattttcaacCTACGACTCTGA
TAATGACCTCCATAAAATTGATCACTGTGCAGCACATTTTCAGGCTGGGT
GGTGGTACCATGGTTGCCATTGGTCCCTTTTAACCGGCAGATATGGTAGC
AGTGATTTGGTTTGGATTACTAACAATGCTAAAAGCTTAGAATTAAAGTT
TGTGGAGATAAAGTTTCGCC
Run BLAST on NCBI

protein sequence of TCONS_00022085-protein

>TCONS_00022085-protein ID=TCONS_00022085-protein|Name=TCONS_00022085-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
MVTKEKNQTIFVKFDQFRIGNETSKYTMKISGQYSGNASGISTFLSFNNN
MKFSTYDSDNDLHKIDHCAAHFQAGWWYHGCHWSLLTGRYGSSDLVWITN
NAKSLELKFVEIKFR
Run BLAST on NCBI

transcript from alignment at sc0000403:138641..139260

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022085 ID=TCONS_00022085|Name=TCONS_00022085|organism=Clytia hemisphaerica|type=transcript|length=620bp|location=Sequence derived from alignment at sc0000403:138641..139260 (Clytia hemisphaerica)
GGCGAAACTTTATCTCCACAAACTTTAATTCTAAGCTTTTAGCATTGTTA
GTAATCCAAACCAAATCACTGCTACCATATCTGCCGGTTAAAAGGGACCA
ATGGCAACCATGGTACCACCACCCAGCCTGAAAATGTGCTGCACAGTGAT
CAATTTTATGGAGGTCATTATCAGAGTCGTAGgttgaaaatttcatattg
TTGTTGAATGACAAGAACGTGCTTATGCCTGATGCATTACCAGAATATTG
TCCACTGATTTTCATAGTGTATTTACTCGTCTCATTCCCTATTCTGAACT
GATCGAATTTAACAAAGATAGTTTGGTTCTTCTCCTTTGTTACCATGTTG
ATCAATAACTCAGACTTCTTAGGGGCAGAAGATGGCTTTGTTAGTTGATG
GACTATTTCATTACCAAGCCAGAATTCATTTGCCAGTTTGCCGAAGCCAA
ATTTGTATCCAATCCAGTTTTGTTTGAAATTCGTAGACCCGTCGCACTTA
CGTAAAAAGGTGGTCTAGCCACCATTTCGGGTTGTTTGGTCACAAAAGAC
ACGAGGTCTGTTGAATCCAGGGCCATTAAGACGATAAATACCATTCATTT
GATAGCCAGCTTGTCGAAAT

Coding sequence (CDS) from alignment at sc0000403:138641..139260

>TCONS_00022085 ID=TCONS_00022085|Name=TCONS_00022085|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at sc0000403:138641..139260 (Clytia hemisphaerica)
GCGAAACTTTATCTCCACAAACTTTAATTCTAAGCTTTTAGCATTGTTAG
TAATCCAAACCAAATCACTGCTACCATATCTGCCGGTTAAAAGGGACCAA
TGGCAACCATGGTACCACCACCCAGCCTGAAAATGTGCTGCACAGTGATC
AATTTTATGGAGGTCATTATCAGAGTCGTAGgttgaaaatttcatattgT
TGTTGAATGACAAGAACGTGCTTATGCCTGATGCATTACCAGAATATTGT
CCACTGATTTTCATAGTGTATTTACTCGTCTCATTCCCTATTCTGAACTG
ATCGAATTTAACAAAGATAGTTTGGTTCTTCTCCTTTGTTACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012384XLOC_012384Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022085-proteinTCONS_00022085-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022085-exon-sc0000403-1491911889:138641..139260TCONS_00022085-exon-sc0000403-1491911889:138641..139260Clytia hemisphaericaexon
TCONS_00022085-exon-sc0000403-1510915933:138641..139260TCONS_00022085-exon-sc0000403-1510915933:138641..139260Clytia hemisphaericaexon
TCONS_00022085-exon-sc0000403-1575043694:138641..139260TCONS_00022085-exon-sc0000403-1575043694:138641..139260Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000403supercontigsc0000403:138641..139260 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0977365	0.0956199	0	0	0	0	0	0	0	0	0.0574091	0	0	0.0526013	0	0.132837	0	0.288063	0.0834596	0.488504	0.494867	0.989793	1.20482	0.578994	0	0	0.383236	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014715Fibrinogen_a/b/g_C_2
IPR014716Fibrinogen_a/b/g_C_1
Blast
[Close]
BLAST of TCONS_00022085 vs. Swiss-Prot (Human)
Match: FCN2 (Ficolin-2 OS=Homo sapiens GN=FCN2 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 4.146e-34
Identity = 79/209 (37.80%), Postives = 109/209 (52.15%), Query Frame = 2 
Query:   14 GYQMNGIYRLNGPGFNRPRVFCDQTTRNGG*TTFLRKCDGSTNFKQNWIGYKFGFGKLANEFWLGNEIVHQLTKPSSAPKKSELLINMVTKEKNQTIFVKFDQFRIGNETSKYTMKISGQYSGNASGISTFLSFNNNMKFSTYDSDNDLHKIDHCAAHFQAGWWYHGCHWSLLTGRY-----GS--SDLVWITNNAKSLELKFVEIKFR 619
            G+ ++G + +  P      V CD  T  GG T F R+ DGS +F ++W  YK GFG    EFWLGN+ +H LT    A   SEL +++V  E N   F K+  F++ +E  KY + +     G+A      L+F+NN  FST D DNDL+   +CA  FQ  WWY  CH S L GRY     GS  + + W +    +   K  E+K R
Sbjct:  112 GHFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRVDGSVDFYRDWATYKQGFGSRLGEFWLGNDNIHALT----AQGTSELRVDLVDFEDNYQ-FAKYRSFKVADEAEKYNLVLGAFVEGSA---GDSLTFHNNQSFSTKDQDNDLN-TGNCAVMFQGAWWYKNCHVSNLNGRYLRGTHGSFANGINWKSGKGYNYSYKVSEMKVR 311
The following BLAST results are available for this feature:
BLAST of TCONS_00022085 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FCN24.146e-3437.80Ficolin-2 OS=Homo sapiens GN=FCN2 PE=1 SV=2[more]
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