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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022055 ID=TCONS_00022055|Name=TCONS_00022055|organism=Clytia hemisphaerica|type=transcript|length=839bp
gtttcagataaaaaaagaacacaaatttttgaaaacacacAACTAAAAAA
TGGCACCAACTCAATCAGAACCGATGTACTGTTCCCAACAAATCAATATC
CCACCAGAGTTAccaaatattttgaaacaattCACCAAAGCAGCAATTCG
AACACAACCTACTGATATTTTACAGTGGTCGGCCGCTTACTTTGATGCAC
TATCTAAAGGAGAAAGACCTCCTGTCAAAGAGAGACTAGATTTCCAGCTA
GGCCAAGCAaaagatcaaaatttaaccaaagAAGCTATTGCAGTGTTACA
TCGTCAAGTCGGTGACAAGCCTGTGGTTGAGTACTCGCGTGTTGAAGACA
AATGGCATGCATTGTGTTTGTCTAGCCTGGATCTGGATGCTGTCATGAGG
ATCGGTTCGTTCCCTGAGGAATTTGAATGGCTGAAATTTTTGGCTATTGT
TTGTACCCACATCAGTGAAGATATAGGAGGTGCTTTGAAAATGATATGTG
AAATCTTAACCAAAGATCTACATGGAGGTCAAGCTCGTATCGAATTCGAG
TTATTCCGCACCTTGTACAAGTACCTTGCGACAATCGACGGCGATATTCC
ATTACGTCACGTCAACGCCGTCTTGGAGCATCTGTCATACGACGTTGAAC
GTCAAAATGGAATGATTTCACCCATGAATTTCCTCAGTGAAACATGCCCA
AGTCTAAGCAAGGAAGATGAGTAATATTGGTGGAAAATTGGTTGCTTGTG
TGTGTTATGTTGATGAGAGCTTCATATCGAACAAACGAAGAAGACCTCTC
AAATTTGGCAAAAGGAATTTTCAACCGAGCAGAGGAGAT Run BLAST on NCBI protein sequence of TCONS_00022055-protein >TCONS_00022055-protein ID=TCONS_00022055-protein|Name=TCONS_00022055-protein|organism=Clytia hemisphaerica|type=polypeptide|length=224bp
MAPTQSEPMYCSQQINIPPELPNILKQFTKAAIRTQPTDILQWSAAYFDA
LSKGERPPVKERLDFQLGQAKDQNLTKEAIAVLHRQVGDKPVVEYSRVED
KWHALCLSSLDLDAVMRIGSFPEEFEWLKFLAIVCTHISEDIGGALKMIC
EILTKDLHGGQARIEFELFRTLYKYLATIDGDIPLRHVNAVLEHLSYDVE
RQNGMISPMNFLSETCPSLSKEDE Run BLAST on NCBI transcript from alignment at sc0000403:59333..67902- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022055 ID=TCONS_00022055|Name=TCONS_00022055|organism=Clytia hemisphaerica|type=transcript|length=8570bp|location=Sequence derived from alignment at sc0000403:59333..67902- (Clytia hemisphaerica)
GTTTCAGATAAAAAAAGAACACAAATTTTTGAAAACACACAACTAAAAAA
TGGCACCAACTCAATCAGAACCGATGTACTGTTCCCAACAAATCAATATC
CCACCAGAGTTACCAAATATTTTGAAACAATTCACCAAAGCAGCAATTCG
AACACAACCTACTGATATTTTACAGGTAATATCATTTTCATCTGATAATC
ATCTACATGTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTCTTTACGTTGA
ATTGCTATTATTTTCAAGTAAAAATTTGAAAATTCAAAATCAGATATCTC
AACTTTGGAAAATAGTTGGGGCAAAAACTTTGGAGGTGTTTCTTAAGACC
ATAAAAGGTACCTCTAAGCCAAGTATAAAAAAAATCATAATCTGATAATC
CTTTTAAGCAACAGTGAAGGATAATTTAGATAATTTCTAATATCGATAAT
ATCGATGATCTGGATTTTGATCTTTTCCATGGAATTTCTTATTGTTTCTA
TGTTCGCGGAAACATTCTTAATATTTTAAGCTTAAGTTCCCATGAATATT
CAAATAATATATATTTTAATTAATTTCCCTGATATTTTGTTGTTTTAAGT
TGCGAAAGAGAAAATTAGATGAGCCTCTTCAAGCGAAAAACAAGATGTTA
ATATTTTCATTTCATCTTTTAATTTACTTTTGTAGTGGTCGGCCGCTTAC
TTTGATGCACTATCTAAAGGAGAAAGACCTCCTGTCAAAGAGAGACTAGA
TTTCCAGCTAGGCCAAGCAAAAGATCAAAATTTAACCAAAGAAGCTATTG
CAGTGTTACATCGTCAAGTCGGTGACAAGCCTGTGGTTGAGTACTCGCGT
GTTGAAGACAAATGGCATGCATTGTGTTTGTCTAGCCTGGATCTGGATGC
TGTCATGAGGATCGGTTCGTTCCCTGAGGAATTTGAATGGCTGAAATTTT
TGGCTATTGTTTGTACCCACATCAGTGAAGATATAGGAGGTGCTTTGAAA
ATGATATGTGAAATCTTAACCAAAGATCTACATGGAGGTCAAGCTCGTAT
CGAATTCGAGTTATTCCGCACCTTGTACAAGTACCTTGCGACAATCGACG
GCGATATTCCATTACGTCACGTCAACGCCGTCTTGGAGCATCTGTCATAC
GACGTTGAACGTCAAAATGGAATGATTTCACCCATGAATTTCCTCAGTGA
AACATGCCCAAGTCTAAGCAAGGAAGATGAGTAATATTGGTGGAAAATTG
GTTGCTTGTGTGTGTTATGTTGATGAGAGGTTTGCTCGTTCTTTTTTATG
TCTTTTGTCTCCCTGTACATAATGTGTGATAATTCTTGTGTGCAAGTATC
TCTTTTGAAGCTTTTGACCATGTTCGCAGGTAACTGGTGAAACGAAAAAT
GAAGTCATTCTATTGGCTAGAAGTGACGTAAAAGTTCGGAGGGAAACTGA
ACCGTAGTGTGTGAACGTGGTGTTTGCATATTCCTATACGACTAATTGAA
GGTGATTTGTTTATAATTTATCCTAAAAATGAAAATCCTGATAATAAAAT
GCAAAAGTTTTTTTAATCACATTTAATGTAGCCGTTGTCAGGCCTCAAGT
AGTAATTTCAGATGTACTATATTTCAAAATAGATTACAATAAATACAGAC
ATGGAATGTATATGGGAAGTCTCAAAACATAATGTCCCAGTTAATAGCTG
GTTAAAATGCCAATAACTACCTTTTCAGAGCTTATCAAAATAACAGTGAA
AGGCAGTAATGTATTTAATTTAGTTGCTGATTTTCCTGAATCTAAAGTGC
CATTAGAAGCTAGAGACATAATGTGGACGATTTTCTTTTTAGTTATGTCT
TGCCTTATGTCTGATAACCTGTGCATAGAAAAGATAAAGCTCGCGTACCA
AAATGAAGCCAGCGTCAGTTTCGAGCGTCAGCGTCAGCGTCAGCGTCAGC
GTCAACGCGAATCAGATTCAAATCGAAAGTGGTTATAAAAAGTGTTCTAG
CCAGCTTGGATCGAACGGTATGGCTCCCATTTATAGAAAGGACGCAACCT
ATACCCATTAGTGACCTTTTACAAAAAAAATGAAGTTCATAGCTGCTTCC
AATTTTTCAGTTAGTCGAGGAACGTGTCCCTAACTGACTTTAACCAAAAT
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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CTTTATTTTTTTTGTAAAAGGTCACTAATAGGTGTAAGTTGCGTCCTTTC
TATAAATGGGAGCAATACCGTTCGATCCAAGTTGGCCAGAAAGCCCGAAT
TCGACTTTTTCACATTTTGGTTAAAGTCAGTTAGGGANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTTCATAGCTGCTTCCAATTTTTCAGTTAGTC
GAGGAACGTGTCCCTAACTGACTTTAACCAAAATGTGAAAAAGTGAAATT
CGGGCTTTCTGGCCAACTTGGATTAAATGGTATGGCTTCCATTTATAAAA
AGGACGCAACCTACACCCATTAGTGACCTTTTACAAAAAAAATAAAGTTC
ATAGCTGCTTTCAATTTTTCAGTTAGTCGAGGAACGTGTCCCTAACTGAC
TTTAACTGAAATGTGAAAAAGTCGAATTCGGGCTTTCTGGCCAACTTGGA
TCGNTTTTATTTTTTTTGTAAAAGGTCACTAATGGGTGTAGGTTGCGTCC
TTTCTATAAATGGAAGCCATACCATTTAATCCAAGTTGGCCAGAAAGCCC
GAATTTCACTTTTTCACATTTTGGTTANAGTATTGCTCCCATTTATAGAA
AGGACGCAACTTACACCCACTAGTGACCTTTTACAAAAAAAATGAAGTTC
ATGGCTGCTTCCAATTTTTCAGTTAGTCGAGGAACGTGTCCCTAACTGAC
TTTAACTGAAATGTGAAAAAGTCGAATTCGGGCTTTCTGGCCAACTTGGA
TCGAACGGTATTGCTCCCATTTATAGAAAGGACGCAACTTACACCCACTA
GTGACCTTTTACAAAAAAAATGAAGTTCATGGCTGCTTCCAATTTTTCAG
TTAGTCGAGGAACGTGTCCCTAACTGACTTTAACTGAAATGTGAAAAAGT
CGAATTCGGGCTTTCTGGCCAACTTGGATCGAACGGTATGGCTCCCATTT
ATAGAAAGGACGCAACTTACACCCACTAGTGACCTTTTACAAAAAAAATG
AAGTTCATAGCTGCTTCCAATTTTTCAGTTAGTCGAGGAATAGAAAGGAC
GCAACCTACACCCATTAGTGACCTTTTACAAAAAAATTGAAGTTCATAGC
TGCTTCCAATTTTTCAGTTAGTCGAGGAACGTGTCCCTGACTGACTTTAA
CCAAAATGTGAAAAAGTGGAATTCGGGCTTTCTGGCCAACTTAGATCGAA
TAGTATGGCTCTTATTTATAGAAAGGACGCAACCTACACCTATTAGTGAC
CTTTTACAAAAAAATTAAAGTTCATAGCTGCTTCCAATTTTTCAGTTAGT
CGAGGAACGTGTCCCTAACTGACTTTAACCAAAATGTGAAAAAGTGAAAT
TCGGGCTTTCTGGCCAACGACTCATTACTGTTTCATTAGCATTTTATTAG
CTTTTTTTCAGAGGTAAGACAACATGGTTATAGAAGTGGCATATACCAGT
CAGCTCGCCCGCGCACTGGAAGACGACTACATTAAGTTTTAGCATAATCA
TTGTTTAATTTTACAATGTAACAATTATGTAGTGAAGTTGATGAGCACAA
ATAAATAAAACACAAAATATCTTTTTAAGCCTGGTTTTGTGTCATGGGCG
GACGCTCTTGGGGTATTCCCAATAGTTGAATTGGTGCCACACCACGCTGT
CTCTCACTATGAAATCAAAAGCGAAAAATGTCGATCAAAATTTCTCTTTT
GTGCAGTTGGTAAGATTTTTCGATTTATATATTTCATTTTATCTTACTAA
GCAGTCAAACAAGAAAGATCGTTAAAGTTTATCGTCAAAAAACACAGAAA
GAGAAAAAACGAAAAAGGCACAATTGATGGGTTTCCAGAAGAAAAGTTTG
GTCATCTTTTTTAAGTTGACGATAAACCAGTTATCACCCTTTATCAGCAA
TTTGTTAGAAAATGGCAATCAAAACAAAACATCTAATTATCTTTTCAACG
AGCACAGGATTTAGATATTTATAATTCCATCTAATTATTATTGGTTTTAG
CTTCATATCGAACAAACGAAGAAGACCTCTCAAATTTGGCAAAAGGAATT
TTCAACCGAGCAGAGGAGAT Coding sequence (CDS) from alignment at sc0000403:59333..67902- >TCONS_00022055 ID=TCONS_00022055|Name=TCONS_00022055|organism=Clytia hemisphaerica|type=CDS|length=1350bp|location=Sequence derived from alignment at sc0000403:59333..67902- (Clytia hemisphaerica)
TGGTCGGCCGCTTACTTTGATGCACTATCTAAAGGAGAAAGACCTCCTGT
CAAAGAGAGACTAGATTTCCAGCTAGGCCAAGCAAAAGATCAAAATTTAA
CCAAAGAAGCTATTGCAGTGTTACATCGTCAAGTCGGTGACAAGCCTGTG
GTTGAGTACTCGCGTGTTGAAGACAAATGGCATGCATTGTGTTTGTCTAG
CCTGGATCTGGATGCTGTCATGAGGATCGGTTCGTTCCCTGAGGAATTTG
AATGGCTGAAATTTTTGGCTATTGTTTGTACCCACATCAGTGAAGATATA
GGAGGTGCTTTGAAAATGATATGTGAAATCTTAACCAAAGATCTACATGG
AGGTCAAGCTCGTATCGAATTCGAGTTATTCCGCACCTTGTACAAGTACC
TTGCGACAATCGACGGCGATATTCCATTACGTCACGTCAACGCCGTCTTG
GAGCATCTGTCATACGACGTTGAACGTCAAAATGGAATGATTTCACCCAT
GAATTTCCTCAGTGAAACATGCCCAAGTCTAAGCAAGGAAGATGAGTAAA
TGGCACCAACTCAATCAGAACCGATGTACTGTTCCCAACAAATCAATATC
CCACCAGAGTTACCAAATATTTTGAAACAATTCACCAAAGCAGCAATTCG
AACACAACCTACTGATATTTTACAGTGGTCGGCCGCTTACTTTGATGCAC
TATCTAAAGGAGAAAGACCTCCTGTCAAAGAGAGACTAGATTTCCAGCTA
GGCCAAGCAAAAGATCAAAATTTAACCAAAGAAGCTATTGCAGTGTTACA
TCGTCAAGTCGGTGACAAGCCTGTGGTTGAGTACTCGCGTGTTGAAGACA
AATGGCATGCATTGTGTTTGTCTAGCCTGGATCTGGATGCTGTCATGAGG
ATCGGTTCGTTCCCTGAGGAATTTGAATGGCTGAAATTTTTGGCTATTGT
TTGTACCCACATCAGTGAAGATATAGGAGGTGCTTTGAAAATGATATGTG
AAATCTTAACCAAAGATCTACATGGAGGTCAAGCTCGTATCGAATTCGAG
TTATTCCGCACCTTGTACAAGTACCTTGCGACAATCGACGGCGATATTCC
ATTACGTCACGTCAACGCCGTCTTGGAGCATCTGTCATACGACGTTGAAC
GTCAAAATGGAATGATTTCACCCATGAATTTCCTCAGTGAAACATGCCCA
AGTCTAAGCAAGGAAGATGAGTAAATGGCACCAACTCAATCAGAACCGAT
GTACTGTTCCCAACAAATCAATATCCCACCAGAGTTACCAAATATTTTGA
AACAATTCACCAAAGCAGCAATTCGAACACAACCTACTGATATTTTACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022055-exon-sc0000403-1575043694:67728..67902 | TCONS_00022055-exon-sc0000403-1575043694:67728..67902 | Clytia hemisphaerica | exon |
| TCONS_00022055-exon-sc0000403-1575043694:65574..66167 | TCONS_00022055-exon-sc0000403-1575043694:65574..66167 | Clytia hemisphaerica | exon |
| TCONS_00022055-exon-sc0000403-1575043694:59333..59402 | TCONS_00022055-exon-sc0000403-1575043694:59333..59402 | Clytia hemisphaerica | exon |
| TCONS_00022055-exon-sc0000403-1510915933:67728..67902 | TCONS_00022055-exon-sc0000403-1510915933:67728..67902 | Clytia hemisphaerica | exon |
| TCONS_00022055-exon-sc0000403-1510915933:65574..66167 | TCONS_00022055-exon-sc0000403-1510915933:65574..66167 | Clytia hemisphaerica | exon |
| TCONS_00022055-exon-sc0000403-1510915933:59333..59402 | TCONS_00022055-exon-sc0000403-1510915933:59333..59402 | Clytia hemisphaerica | exon |
| TCONS_00022055-exon-sc0000403-1491911889:67728..67902 | TCONS_00022055-exon-sc0000403-1491911889:67728..67902 | Clytia hemisphaerica | exon |
| TCONS_00022055-exon-sc0000403-1491911889:65574..66167 | TCONS_00022055-exon-sc0000403-1491911889:65574..66167 | Clytia hemisphaerica | exon |
| TCONS_00022055-exon-sc0000403-1491911889:59333..59402 | TCONS_00022055-exon-sc0000403-1491911889:59333..59402 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000403 | supercontig | sc0000403:59333..67902 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003117 | cAMP_dep_PK_reg_su_I/II_a/b |
Blast
BLAST of TCONS_00022055 vs. Swiss-Prot (Human)
Match: ROP1L (Ropporin-1-like protein OS=Homo sapiens GN=ROPN1L PE=1 SV=2) HSP 1 Score: 187.963 bits (476), Expect = 7.372e-58 Identity = 93/206 (45.15%), Postives = 132/206 (64.08%), Query Frame = 2
Query: 74 MYCSQQINIPPELPNILKQFTKAAIRTQPTDILQWSAAYFDALSKGERPPVKERLDFQLG-QAKDQNLTKEAIAVLHRQVGDKPVVEYSRVEDKWHALCLSSLDLDAVMRIGSFPEEFEWLKFLAIVCTHISEDIGGALKMICEILTKDLHGGQARIEFELFRTLYKYLATIDGDIPLRHVNAVLEHLSYDVE-RQNGMISPMNFL 685
M+C+QQI+IPPELP+ILKQFTKAAIRTQP D+L+WSA YF ALS+G+ PVK+R++ Q D LT+ + VLH+Q K VE + +E KW LCL A++++ + +W+ FLA+ C+ + + ALK +CEILT D GG ARI F+ F +Y+YLA +D D+ + L L +++ R+NGMI +F
Sbjct: 7 MFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDRMEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPCENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDSDVSPLETESYLASLKENIDARKNGMIGLSDFF 212
The following BLAST results are available for this feature:
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