TCONS_00022055 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022055
Unique NameTCONS_00022055
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length839

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022055 ID=TCONS_00022055|Name=TCONS_00022055|organism=Clytia hemisphaerica|type=transcript|length=839bp
gtttcagataaaaaaagaacacaaatttttgaaaacacacAACTAAAAAA
TGGCACCAACTCAATCAGAACCGATGTACTGTTCCCAACAAATCAATATC
CCACCAGAGTTAccaaatattttgaaacaattCACCAAAGCAGCAATTCG
AACACAACCTACTGATATTTTACAGTGGTCGGCCGCTTACTTTGATGCAC
TATCTAAAGGAGAAAGACCTCCTGTCAAAGAGAGACTAGATTTCCAGCTA
GGCCAAGCAaaagatcaaaatttaaccaaagAAGCTATTGCAGTGTTACA
TCGTCAAGTCGGTGACAAGCCTGTGGTTGAGTACTCGCGTGTTGAAGACA
AATGGCATGCATTGTGTTTGTCTAGCCTGGATCTGGATGCTGTCATGAGG
ATCGGTTCGTTCCCTGAGGAATTTGAATGGCTGAAATTTTTGGCTATTGT
TTGTACCCACATCAGTGAAGATATAGGAGGTGCTTTGAAAATGATATGTG
AAATCTTAACCAAAGATCTACATGGAGGTCAAGCTCGTATCGAATTCGAG
TTATTCCGCACCTTGTACAAGTACCTTGCGACAATCGACGGCGATATTCC
ATTACGTCACGTCAACGCCGTCTTGGAGCATCTGTCATACGACGTTGAAC
GTCAAAATGGAATGATTTCACCCATGAATTTCCTCAGTGAAACATGCCCA
AGTCTAAGCAAGGAAGATGAGTAATATTGGTGGAAAATTGGTTGCTTGTG
TGTGTTATGTTGATGAGAGCTTCATATCGAACAAACGAAGAAGACCTCTC
AAATTTGGCAAAAGGAATTTTCAACCGAGCAGAGGAGAT
Run BLAST on NCBI

protein sequence of TCONS_00022055-protein

>TCONS_00022055-protein ID=TCONS_00022055-protein|Name=TCONS_00022055-protein|organism=Clytia hemisphaerica|type=polypeptide|length=224bp
MAPTQSEPMYCSQQINIPPELPNILKQFTKAAIRTQPTDILQWSAAYFDA
LSKGERPPVKERLDFQLGQAKDQNLTKEAIAVLHRQVGDKPVVEYSRVED
KWHALCLSSLDLDAVMRIGSFPEEFEWLKFLAIVCTHISEDIGGALKMIC
EILTKDLHGGQARIEFELFRTLYKYLATIDGDIPLRHVNAVLEHLSYDVE
RQNGMISPMNFLSETCPSLSKEDE
Run BLAST on NCBI

transcript from alignment at sc0000403:59333..67902-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022055 ID=TCONS_00022055|Name=TCONS_00022055|organism=Clytia hemisphaerica|type=transcript|length=8570bp|location=Sequence derived from alignment at sc0000403:59333..67902- (Clytia hemisphaerica)
GTTTCAGATAAAAAAAGAACACAAATTTTTGAAAACACACAACTAAAAAA
TGGCACCAACTCAATCAGAACCGATGTACTGTTCCCAACAAATCAATATC
CCACCAGAGTTACCAAATATTTTGAAACAATTCACCAAAGCAGCAATTCG
AACACAACCTACTGATATTTTACAGGTAATATCATTTTCATCTGATAATC
ATCTACATGTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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ATTGCTATTATTTTCAAGTAAAAATTTGAAAATTCAAAATCAGATATCTC
AACTTTGGAAAATAGTTGGGGCAAAAACTTTGGAGGTGTTTCTTAAGACC
ATAAAAGGTACCTCTAAGCCAAGTATAAAAAAAATCATAATCTGATAATC
CTTTTAAGCAACAGTGAAGGATAATTTAGATAATTTCTAATATCGATAAT
ATCGATGATCTGGATTTTGATCTTTTCCATGGAATTTCTTATTGTTTCTA
TGTTCGCGGAAACATTCTTAATATTTTAAGCTTAAGTTCCCATGAATATT
CAAATAATATATATTTTAATTAATTTCCCTGATATTTTGTTGTTTTAAGT
TGCGAAAGAGAAAATTAGATGAGCCTCTTCAAGCGAAAAACAAGATGTTA
ATATTTTCATTTCATCTTTTAATTTACTTTTGTAGTGGTCGGCCGCTTAC
TTTGATGCACTATCTAAAGGAGAAAGACCTCCTGTCAAAGAGAGACTAGA
TTTCCAGCTAGGCCAAGCAAAAGATCAAAATTTAACCAAAGAAGCTATTG
CAGTGTTACATCGTCAAGTCGGTGACAAGCCTGTGGTTGAGTACTCGCGT
GTTGAAGACAAATGGCATGCATTGTGTTTGTCTAGCCTGGATCTGGATGC
TGTCATGAGGATCGGTTCGTTCCCTGAGGAATTTGAATGGCTGAAATTTT
TGGCTATTGTTTGTACCCACATCAGTGAAGATATAGGAGGTGCTTTGAAA
ATGATATGTGAAATCTTAACCAAAGATCTACATGGAGGTCAAGCTCGTAT
CGAATTCGAGTTATTCCGCACCTTGTACAAGTACCTTGCGACAATCGACG
GCGATATTCCATTACGTCACGTCAACGCCGTCTTGGAGCATCTGTCATAC
GACGTTGAACGTCAAAATGGAATGATTTCACCCATGAATTTCCTCAGTGA
AACATGCCCAAGTCTAAGCAAGGAAGATGAGTAATATTGGTGGAAAATTG
GTTGCTTGTGTGTGTTATGTTGATGAGAGGTTTGCTCGTTCTTTTTTATG
TCTTTTGTCTCCCTGTACATAATGTGTGATAATTCTTGTGTGCAAGTATC
TCTTTTGAAGCTTTTGACCATGTTCGCAGGTAACTGGTGAAACGAAAAAT
GAAGTCATTCTATTGGCTAGAAGTGACGTAAAAGTTCGGAGGGAAACTGA
ACCGTAGTGTGTGAACGTGGTGTTTGCATATTCCTATACGACTAATTGAA
GGTGATTTGTTTATAATTTATCCTAAAAATGAAAATCCTGATAATAAAAT
GCAAAAGTTTTTTTAATCACATTTAATGTAGCCGTTGTCAGGCCTCAAGT
AGTAATTTCAGATGTACTATATTTCAAAATAGATTACAATAAATACAGAC
ATGGAATGTATATGGGAAGTCTCAAAACATAATGTCCCAGTTAATAGCTG
GTTAAAATGCCAATAACTACCTTTTCAGAGCTTATCAAAATAACAGTGAA
AGGCAGTAATGTATTTAATTTAGTTGCTGATTTTCCTGAATCTAAAGTGC
CATTAGAAGCTAGAGACATAATGTGGACGATTTTCTTTTTAGTTATGTCT
TGCCTTATGTCTGATAACCTGTGCATAGAAAAGATAAAGCTCGCGTACCA
AAATGAAGCCAGCGTCAGTTTCGAGCGTCAGCGTCAGCGTCAGCGTCAGC
GTCAACGCGAATCAGATTCAAATCGAAAGTGGTTATAAAAAGTGTTCTAG
CCAGCTTGGATCGAACGGTATGGCTCCCATTTATAGAAAGGACGCAACCT
ATACCCATTAGTGACCTTTTACAAAAAAAATGAAGTTCATAGCTGCTTCC
AATTTTTCAGTTAGTCGAGGAACGTGTCCCTAACTGACTTTAACCAAAAT
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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CTTTATTTTTTTTGTAAAAGGTCACTAATAGGTGTAAGTTGCGTCCTTTC
TATAAATGGGAGCAATACCGTTCGATCCAAGTTGGCCAGAAAGCCCGAAT
TCGACTTTTTCACATTTTGGTTAAAGTCAGTTAGGGANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTTCATAGCTGCTTCCAATTTTTCAGTTAGTC
GAGGAACGTGTCCCTAACTGACTTTAACCAAAATGTGAAAAAGTGAAATT
CGGGCTTTCTGGCCAACTTGGATTAAATGGTATGGCTTCCATTTATAAAA
AGGACGCAACCTACACCCATTAGTGACCTTTTACAAAAAAAATAAAGTTC
ATAGCTGCTTTCAATTTTTCAGTTAGTCGAGGAACGTGTCCCTAACTGAC
TTTAACTGAAATGTGAAAAAGTCGAATTCGGGCTTTCTGGCCAACTTGGA
TCGNTTTTATTTTTTTTGTAAAAGGTCACTAATGGGTGTAGGTTGCGTCC
TTTCTATAAATGGAAGCCATACCATTTAATCCAAGTTGGCCAGAAAGCCC
GAATTTCACTTTTTCACATTTTGGTTANAGTATTGCTCCCATTTATAGAA
AGGACGCAACTTACACCCACTAGTGACCTTTTACAAAAAAAATGAAGTTC
ATGGCTGCTTCCAATTTTTCAGTTAGTCGAGGAACGTGTCCCTAACTGAC
TTTAACTGAAATGTGAAAAAGTCGAATTCGGGCTTTCTGGCCAACTTGGA
TCGAACGGTATTGCTCCCATTTATAGAAAGGACGCAACTTACACCCACTA
GTGACCTTTTACAAAAAAAATGAAGTTCATGGCTGCTTCCAATTTTTCAG
TTAGTCGAGGAACGTGTCCCTAACTGACTTTAACTGAAATGTGAAAAAGT
CGAATTCGGGCTTTCTGGCCAACTTGGATCGAACGGTATGGCTCCCATTT
ATAGAAAGGACGCAACTTACACCCACTAGTGACCTTTTACAAAAAAAATG
AAGTTCATAGCTGCTTCCAATTTTTCAGTTAGTCGAGGAATAGAAAGGAC
GCAACCTACACCCATTAGTGACCTTTTACAAAAAAATTGAAGTTCATAGC
TGCTTCCAATTTTTCAGTTAGTCGAGGAACGTGTCCCTGACTGACTTTAA
CCAAAATGTGAAAAAGTGGAATTCGGGCTTTCTGGCCAACTTAGATCGAA
TAGTATGGCTCTTATTTATAGAAAGGACGCAACCTACACCTATTAGTGAC
CTTTTACAAAAAAATTAAAGTTCATAGCTGCTTCCAATTTTTCAGTTAGT
CGAGGAACGTGTCCCTAACTGACTTTAACCAAAATGTGAAAAAGTGAAAT
TCGGGCTTTCTGGCCAACGACTCATTACTGTTTCATTAGCATTTTATTAG
CTTTTTTTCAGAGGTAAGACAACATGGTTATAGAAGTGGCATATACCAGT
CAGCTCGCCCGCGCACTGGAAGACGACTACATTAAGTTTTAGCATAATCA
TTGTTTAATTTTACAATGTAACAATTATGTAGTGAAGTTGATGAGCACAA
ATAAATAAAACACAAAATATCTTTTTAAGCCTGGTTTTGTGTCATGGGCG
GACGCTCTTGGGGTATTCCCAATAGTTGAATTGGTGCCACACCACGCTGT
CTCTCACTATGAAATCAAAAGCGAAAAATGTCGATCAAAATTTCTCTTTT
GTGCAGTTGGTAAGATTTTTCGATTTATATATTTCATTTTATCTTACTAA
GCAGTCAAACAAGAAAGATCGTTAAAGTTTATCGTCAAAAAACACAGAAA
GAGAAAAAACGAAAAAGGCACAATTGATGGGTTTCCAGAAGAAAAGTTTG
GTCATCTTTTTTAAGTTGACGATAAACCAGTTATCACCCTTTATCAGCAA
TTTGTTAGAAAATGGCAATCAAAACAAAACATCTAATTATCTTTTCAACG
AGCACAGGATTTAGATATTTATAATTCCATCTAATTATTATTGGTTTTAG
CTTCATATCGAACAAACGAAGAAGACCTCTCAAATTTGGCAAAAGGAATT
TTCAACCGAGCAGAGGAGAT

Coding sequence (CDS) from alignment at sc0000403:59333..67902-

>TCONS_00022055 ID=TCONS_00022055|Name=TCONS_00022055|organism=Clytia hemisphaerica|type=CDS|length=1350bp|location=Sequence derived from alignment at sc0000403:59333..67902- (Clytia hemisphaerica)
TGGTCGGCCGCTTACTTTGATGCACTATCTAAAGGAGAAAGACCTCCTGT
CAAAGAGAGACTAGATTTCCAGCTAGGCCAAGCAAAAGATCAAAATTTAA
CCAAAGAAGCTATTGCAGTGTTACATCGTCAAGTCGGTGACAAGCCTGTG
GTTGAGTACTCGCGTGTTGAAGACAAATGGCATGCATTGTGTTTGTCTAG
CCTGGATCTGGATGCTGTCATGAGGATCGGTTCGTTCCCTGAGGAATTTG
AATGGCTGAAATTTTTGGCTATTGTTTGTACCCACATCAGTGAAGATATA
GGAGGTGCTTTGAAAATGATATGTGAAATCTTAACCAAAGATCTACATGG
AGGTCAAGCTCGTATCGAATTCGAGTTATTCCGCACCTTGTACAAGTACC
TTGCGACAATCGACGGCGATATTCCATTACGTCACGTCAACGCCGTCTTG
GAGCATCTGTCATACGACGTTGAACGTCAAAATGGAATGATTTCACCCAT
GAATTTCCTCAGTGAAACATGCCCAAGTCTAAGCAAGGAAGATGAGTAAA
TGGCACCAACTCAATCAGAACCGATGTACTGTTCCCAACAAATCAATATC
CCACCAGAGTTACCAAATATTTTGAAACAATTCACCAAAGCAGCAATTCG
AACACAACCTACTGATATTTTACAGTGGTCGGCCGCTTACTTTGATGCAC
TATCTAAAGGAGAAAGACCTCCTGTCAAAGAGAGACTAGATTTCCAGCTA
GGCCAAGCAAAAGATCAAAATTTAACCAAAGAAGCTATTGCAGTGTTACA
TCGTCAAGTCGGTGACAAGCCTGTGGTTGAGTACTCGCGTGTTGAAGACA
AATGGCATGCATTGTGTTTGTCTAGCCTGGATCTGGATGCTGTCATGAGG
ATCGGTTCGTTCCCTGAGGAATTTGAATGGCTGAAATTTTTGGCTATTGT
TTGTACCCACATCAGTGAAGATATAGGAGGTGCTTTGAAAATGATATGTG
AAATCTTAACCAAAGATCTACATGGAGGTCAAGCTCGTATCGAATTCGAG
TTATTCCGCACCTTGTACAAGTACCTTGCGACAATCGACGGCGATATTCC
ATTACGTCACGTCAACGCCGTCTTGGAGCATCTGTCATACGACGTTGAAC
GTCAAAATGGAATGATTTCACCCATGAATTTCCTCAGTGAAACATGCCCA
AGTCTAAGCAAGGAAGATGAGTAAATGGCACCAACTCAATCAGAACCGAT
GTACTGTTCCCAACAAATCAATATCCCACCAGAGTTACCAAATATTTTGA
AACAATTCACCAAAGCAGCAATTCGAACACAACCTACTGATATTTTACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012376XLOC_012376Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022055-proteinTCONS_00022055-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022055-exon-sc0000403-1575043694:67728..67902TCONS_00022055-exon-sc0000403-1575043694:67728..67902Clytia hemisphaericaexon
TCONS_00022055-exon-sc0000403-1575043694:65574..66167TCONS_00022055-exon-sc0000403-1575043694:65574..66167Clytia hemisphaericaexon
TCONS_00022055-exon-sc0000403-1575043694:59333..59402TCONS_00022055-exon-sc0000403-1575043694:59333..59402Clytia hemisphaericaexon
TCONS_00022055-exon-sc0000403-1510915933:67728..67902TCONS_00022055-exon-sc0000403-1510915933:67728..67902Clytia hemisphaericaexon
TCONS_00022055-exon-sc0000403-1510915933:65574..66167TCONS_00022055-exon-sc0000403-1510915933:65574..66167Clytia hemisphaericaexon
TCONS_00022055-exon-sc0000403-1510915933:59333..59402TCONS_00022055-exon-sc0000403-1510915933:59333..59402Clytia hemisphaericaexon
TCONS_00022055-exon-sc0000403-1491911889:67728..67902TCONS_00022055-exon-sc0000403-1491911889:67728..67902Clytia hemisphaericaexon
TCONS_00022055-exon-sc0000403-1491911889:65574..66167TCONS_00022055-exon-sc0000403-1491911889:65574..66167Clytia hemisphaericaexon
TCONS_00022055-exon-sc0000403-1491911889:59333..59402TCONS_00022055-exon-sc0000403-1491911889:59333..59402Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000403supercontigsc0000403:59333..67902 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.88609	3.21373	5.28562	5.96527	150.86	117.375	64.7408	66.9345	69.82	65.8692	51.7344	69.598	42.5008	48.6246	21.0663	22.3794	35.4885	42.819	88.2313	97.7989	45.2218	44.2407	17.1582	20.4974	66.7102	45.7471	24.0701	18.4796	7.69268	7.87068
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003117cAMP_dep_PK_reg_su_I/II_a/b
Blast
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BLAST of TCONS_00022055 vs. Swiss-Prot (Human)
Match: ROP1L (Ropporin-1-like protein OS=Homo sapiens GN=ROPN1L PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 7.372e-58
Identity = 93/206 (45.15%), Postives = 132/206 (64.08%), Query Frame = 2 
Query:   74 MYCSQQINIPPELPNILKQFTKAAIRTQPTDILQWSAAYFDALSKGERPPVKERLDFQLG-QAKDQNLTKEAIAVLHRQVGDKPVVEYSRVEDKWHALCLSSLDLDAVMRIGSFPEEFEWLKFLAIVCTHISEDIGGALKMICEILTKDLHGGQARIEFELFRTLYKYLATIDGDIPLRHVNAVLEHLSYDVE-RQNGMISPMNFL 685
            M+C+QQI+IPPELP+ILKQFTKAAIRTQP D+L+WSA YF ALS+G+  PVK+R++     Q  D  LT+  + VLH+Q   K  VE + +E KW  LCL      A++++     + +W+ FLA+ C+ +   +  ALK +CEILT D  GG ARI F+ F  +Y+YLA +D D+      + L  L  +++ R+NGMI   +F 
Sbjct:    7 MFCAQQIHIPPELPDILKQFTKAAIRTQPADVLRWSAGYFSALSRGDPLPVKDRMEMPTATQKTDTGLTQGLLKVLHKQCHHKRYVELTDLEQKWKNLCLPKEKFKALLQLDPCENKIKWINFLALGCSMLGGSLNTALKHLCEILTDDPEGGPARIPFKTFSYVYRYLARLDSDVSPLETESYLASLKENIDARKNGMIGLSDFF 212
The following BLAST results are available for this feature:
BLAST of TCONS_00022055 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ROP1L7.372e-5845.15Ropporin-1-like protein OS=Homo sapiens GN=ROPN1L ... [more]
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