TCONS_00021598 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021598
Unique NameTCONS_00021598
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1152

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021598 ID=TCONS_00021598|Name=TCONS_00021598|organism=Clytia hemisphaerica|type=transcript|length=1152bp
gtattttcctcagatgtataattttcaagtgcctttagaggtttaccgtg
cacgtaagaaaattatgaacagctgttatcaggttagtaAATACTTTCTA
CATAATTCAGTGTGTATTTTGTATTGCTGCAGCAAGCGGGAGTTTTCAGA
GTTTGAACTGCTTTTTTATGGGCGAGCACCTAATTTTAAAGTAGCTTgca
gttgttttttttttagtgtggcatagttttttttgaaaacagagAGAAGA
ATATGACTGCGAAGTCTTGCATCAAgtatttgttgttttcttttaatGTC
ATATTTTGGCTTGCTGGGTTAGCAGCTGTTGGTGTTGGCATATGGCTTCT
ATTTGATCCTGGACGCTTCAACGACTTCTTAGGGAGATACACGTTTACAA
TCCCAGCCTCGATTCTCATTGCAACTGGCCTATTTGTTTGTATGGTTGGC
TTTTGTGGATGTGCTGGTGCAATCAAAGAGAGTAAATGTCTTCTCGGCAC
AtatttcaCAATGCTTCTCATCATCTTTTGTGCGGAAATTGCTGCTGGTG
TCCTTGGGTTCCTTTACCGAGATAAGATCAAAGATGAAGTGACAACAGAG
GCGCAGAGAGTCATTGAAAAAGAATATGGTACAGGAAATTCTGATATCGA
CCATGCTGTGGATATCTTACAAGAAAAGtTGAAATGTTGTGGAGTGAAAT
CGGCAACAGAGTACATCACTTCTGCTTGGAAACAGACCACCAACAAGTCT
TATCCTCCATCTTGTTGCTCGAATCAACAATCATGTGCGATTTCCACACC
TGATAATAATCAATTGGTCTACCTGGATGGATGCCTTGACAAGTTAACAG
AGTATGTTAAAGACAACTTGATGATTCTTGGCGGTATTGGTGTCGGACTG
GCATGTATTCAGGGAAAATACTAAAATCTGATTGGATGCGAAAAAACGAG
CTGCAACGAGATTAGTTTACAATCAGGCGTTCGTATAAGTGTAGTGAAAA
CTTGTTGAGCAGCGGTTATGCATCACGCATGACACTCTGGCTATGACCCA
TTGTGAAAAATTAGTTCCTCAAACACATCCGATGGTCGGGAACTCACATG
CTCGACATTCTCCAATCCTAGTATCCCCGGGTGAAAGTTACACTGCTACC
AT
Run BLAST on NCBI

protein sequence of TCONS_00021598-protein

>TCONS_00021598-protein ID=TCONS_00021598-protein|Name=TCONS_00021598-protein|organism=Clytia hemisphaerica|type=polypeptide|length=223bp
MTAKSCIKYLLFSFNVIFWLAGLAAVGVGIWLLFDPGRFNDFLGRYTFTI
PASILIATGLFVCMVGFCGCAGAIKESKCLLGTYFTMLLIIFCAEIAAGV
LGFLYRDKIKDEVTTEAQRVIEKEYGTGNSDIDHAVDILQEKLKCCGVKS
ATEYITSAWKQTTNKSYPPSCCSNQQSCAISTPDNNQLVYLDGCLDKLTE
YVKDNLMILGGIGVGLACIQGKY
Run BLAST on NCBI

transcript from alignment at sc0000390:192761..200892-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021598 ID=TCONS_00021598|Name=TCONS_00021598|organism=Clytia hemisphaerica|type=transcript|length=8132bp|location=Sequence derived from alignment at sc0000390:192761..200892- (Clytia hemisphaerica)
GTATTTTCCTCAGATGTATAATTTTCAAGTGCCTTTAGAGGTTTACCGTG
CACGTAAGAAAATTATGAACAGCTGTTATCAGGTTAGTAAATACTTTCTA
CATAATTCAGTGTGTATTTTGTATTGCTGCAGCAAGCGGGAGTTTTCAGA
GTTTGAACTGCTTTTTTATGGGCGAGCACCTAATTTTAAAGTAGCTTGCA
GTTGTTTTTTTTTTAGTGTGGCATAGTTTTTTTTGAAAACAGAGAGAAGA
ATATGACTGCGAAGTCTTGCATCAAGTATTTGTTGTTTTCTTTTAATGTC
ATATTTTGGGTGAGTAATTTTCTTTTTGAATTTTGGAAAGATAGTCATTG
GGCCTTTCCAAAACTTGTCTGTATAAACAGGCAGGAGAGGGCGGGCGACA
CAGGATTTTTGAGGGCAACAGTTTTCACCAAAATTTAACATTTCCAAGGC
GAGAGAGAAGAAAATGTATGAATCTCCAAGGCAATTGAATTAAAAACGGT
AAAAAAGAGTGGAAATTCCGCAACATTTTGCAAAAGTAAATAGATTTTTA
TAGCCTGGAGCTGGATATCCAGGGCTGTAAACTACCGTAAGTTGGTCTAA
TCTCGACCTCCGTCTTCTAATTTCGACACCCTTCTTTAGTTTAGAGATAG
GCAGTCCGTCACAAACCGCCATATAAACAAAATTCAACATTCTCACCAAA
GTGGTCTTTTTGATTTCCCAAACATTCCTCTAAAGCGTTCACTTCCACAA
TAATTTATGTAAATTGCAATTTCGGTCAGTCCACAGTCGGCTTCAACNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGGATTGCAGCGTT
TGGATAAACGAGACAAAACTCTAAAAAAGCTGGTGTTTTGACGCGCTTCC
GTGTTCTCGAAATATCGCGGTTTGTGGCGCACTGATAGGAATAATATGAA
AGTCGGAATCGGTGATTGAAAAAAAGATTTATCCTCCCTTACCGTGAAAA
AGGGTAACTTGCATCAGTGGAGGCTAACATGCATAGCCCTCAAATGAAAG
GCCCCGCTGGTCATTAAAATACGAAAATAAATCGAAACAAAAATGGGAGA
GTAGAGCTGCGAGCGGAGCTGCGTATGTGTATTTTAATGACCAGCCAGGT
CATTCATTTGAGGGCTATGCATGTTAGCCTCCACTGATGCAAGTTACCCT
TTCTCACGGTACCACTAAGCAAATAAAATAATTTCTTAATTTTTCAGTTC
TAGAAAAGGGTGTCGAATGTAGAGGAGGGATGTCGACAAGTGTTGACATT
AGACCAAGTTACGGTACACAGTGAGATCAGCAGGTAAACTTGCATCAGGC
TAACATGCATAGCCCTTAAATGAATGACCTGGCTGGTCAACGACCCTCGA
CATGGCCCGAGAATTCTCGGGCCAAAACTTTAATTGGAATTCGCGTAAAG
CCCGAGTATGGCCCGAGCTGGCCCGAGAATTCTTGGGCCACGCACGGGCC
ACGCACGGGCCACACCACAATTTTTGAAAACATGATTTAAACAGGCGTGT
AATTTCAGGACTGAATTTTTTTAACATTTTCTTTGAGAAAAACTTGGTTT
CTCTTAATTATATTAAATATATATATTTTTGCAGCTCGTGCTCACTTCGC
TAAAGCTGTAAGGACCAATCTACACGGTGCGGAGCAATTCTGAAGCAAAA
ATAGGGTAGTTGTCCACTTGCTACTGTAGAATCGTCTAATATCGACATGC
GTCTTCTAAAGTCGATACCGGATCTGTAAAATAATCAAAACAAACCTTGA
ATGAAATTCTTCGTATCATTCTTATCAAACAAGTTCATCCATCAAACTAG
AAGTTCAATAAACATTGCAATCCTTTTAATTAAAAAAATAGCCAAAATTA
TAATCAGTTTTACACAAACAAAACACTTCCTCATAACTTTCTCGTGTCCA
CCATTAAAATTTTACAACTTTATTACGCTTCAAGTTATGATAAAAATAAT
TTGTGCGCTTAGCCTGGTTTCCCCTTCCTTATTTATCAAAAACACACGCT
CTACACAGGAAAAAATTTTCGATTTCCAACGTTGGAAATTCAAATTTGAA
AAAACCTTTGAGAAAACCACAAGCGATTTTTCGCTCAAAACAGGTAGGTC
CTTTCAGCATGTAGCTTGTTTGCTTATTCTTTTTTCTACATGATCTTGAA
CGAATTTTGAAAAACAAATTAGTGGAAAATATAAGCAAATTTGAATATCT
TTCAAATGATAATTTTTATTATACAACAAATGCTTGGGAAATTATGGCCA
AGAATTGAATTACTTACCTATACAATACTGGAAACTGGATCTTCTAGCTC
ATTTTAAGGGGAGAAAAGATGCACAAGAAAATAGATAACTGAGTATACAC
CCTCAAAAAATTGTACAGTGCATAATGTGTATTTTTTACCATATTTTTCT
TGTTTCGATCCCTTCTTTATCTAAAGAATATCCTTGAAAAATTTCATTGA
CCTGTGACAATTTGAAAAAAAAGTTACAGCCAAAGTTATATTTTTGTGAA
TTTTTCCATGATTGATTTAGTAGTGAGTGTGTTTTAATGAACCTTTTCAA
CAGTATATAATTTGATATATTTGAAGCCTTGTTTAAGAAATGACAAGCAC
AACTTGAAATGAACGAACTTTAAATATGTGTTAAACTTTTGGTAAAAGTT
AATGGGGCAATTTTCTTAGGGCAAATTCTAAAGGATAATTTTCCTAGTAG
AGGCCAAATTTCTAGGGAAGGGGGGGTGTTTAGATTTTAGACTAAAAAGT
ATAGAAATTATTCTTTCTTGGAGCTTGCATTTGTTTTCTTGCTATTGCTT
TCTTGCTATTGCTGCTATTGACAGTAAGTCACACTAGCGTCCCGCCAAAA
TGCATATCAAAGATTAATGCTGCGAAAGCGCTATATCGTTTACTTGACTC
ACAAGCAAAAAAATGCGCCGCAAAACTCCTAAAAGGATTTATGAAAAAAT
GACACGGCGCTTTTTGATCCATTTACATGATTCATTTACATGTGCGGAAT
TGATTTTACTTTAGCGTATAAACAATGCCTTAAAAATCGAAGCGAAATTA
CTCCAATCAAAAATAATTCTAAATTCATACATAACTGTTTGATGCATTTG
TGAAATCCCAGTGATTAGTGGCTTTTAAAGCATTTTTCATAAAGTCCATC
TAAATAAATTGCTAGTCTTGGGATTAAAATTTTGTTAATATTTAATCTCA
ATATGTACTTTATTGATGATGAAATTTAAATCAATCTGACTGTAGTTTTC
CCTTCATATAAATTCAGCTTGCTGGGTTAGCAGCTGTTGGTGTTGGCATA
TGGCTTCTATTTGATCCTGGACGCTTCAACGACTTCTTAGGGAGATACAC
GTTTACAATCCCAGCCTCGATTCTCATTGCAACTGGCCTATTTGTTTGTA
TGGTTGGCTTTTGTGGATGTGCTGGTGCAATCAAAGAGAGTAAATGTCTT
CTCGGCACAGTAAGTTGTGTAAAATCTATAGGTTAAAGAAGATTCTGTTT
TGATTAGTGACGAAAATACGGGATTCTCTCTTTTCAAAAATCTTATTCAA
GTAATACTATTGCGCAAGGCATTCTAAATCTAGTTCGTAAGGCGATTGAC
AGCAGCTTAGCAGCTTCAGTTAAAACTATTCTTAAGAAGGTTTGGTTTCT
ATTTAGGTCCCTCCGGAATAAATTATGTCAGATTAAACACAACTTTTCAT
ATTTTTTAGTATTTCACAATGCTTCTCATCATCTTTTGTGCGGAAATTGC
TGCTGGTGTCCTTGGGTTCCTTTACCGAGATAAGGTGAGTATAATTTCTC
AAAAGTAACAGGTTAGAGTGGCTCTTCTAATACAAAACTTATAAAAAGAA
TACTTCTTACTGCTTATGTTCTGGCTTTATTAACGCAACCCCCTTTCAGT
AAGCTAGTTCTGCTAAATCAGTTTATTTCAAATTTGTCAAATCTCACTTC
ACCAGCAACTCATTACAATTACATTTCTTGACAAGTTTTTACACTCTTTT
CGAACTATATATGTGATTTTTTATCAAAGAAGATAAGAACTGAGAATCGA
GAATAGTAGGAAATATGTAAGATGCCTTTGAAACAGGAAAAATTTCGAAT
TTATTGTTCTCACAGATCAAAGATGAAGTGACAACAGAGGCGCAGAGAGT
CATTGAAAAAGAATATGGTACAGGAAATTCTGATATCGACCATGCTGTGG
ATATCTTACAAGAAAAGGTCAGGCTTCCCAATTTAAAACTACTTAAATTA
CGCAAAATAAAAAGCTCCTCTTGGTTTTGATCAACCATGTATGTAGAAAT
ACAGAAATGTAGAAATACAGATTAACAGTGACAGTTTTCTTATAACATTT
CTTCAAAGACATCTTTCCACAATGTGCCAAATACTTCTTTGTATGTATAA
GATCCGAACATTTTTAAAACAGTTTGATTGTCAACATTTTAAAAGGTTGG
GACAAGGTTCTTTCATCTTCCCTTTTTACGTGGAAACCCTTTCAATGTTT
ATTCATATAGTTCTTTTCTGGATATAAAATAAAGGTTTTGATTTTTCAGT
TGAAATGTTGTGGAGTGAAATCGGCAACAGAGTACATCACTTCTGCTTGG
AAACAGACCACCAACAAGTCTTATCCTCCATCTTGTTGCTCGAATCAACA
ATCATGTGCGATTTCCACACCTGATAATAATCAATTGGTCTACCTGGATG
TAAGTCTTTCTATTGTTGTTTACAGGGAAATAAAATTGAAATCTCTAAAA
CAAAAATTGATTTTCTGGGTTTCTACCAGTATCGTGCTGACAGAGTGCTG
AAGACAACAAAGCACAGCTCCAATAAATTAAGAAATAATAGTGAGCGAGT
ACTGTCGTCAAACCCGAGTGGTGAATAAGTGATTAAAGCCGATTTACTCA
TATTCACTTGGTCATAATATCCTGCGTGATATTAAGTTTTACGGTTAGGG
GTGTCCTCGAAAAGACTTTGTCCCTTCAGATTACTATTTCACTGCTTAAA
TAGAATTTTCACAGCAAAGGTTAAAAAGTTATCTTAAACATCAAATATCC
GAACAAAAAAGTCAAAGATATAAGTATTTTTCCTTCTGTGCGAGTCCTCA
ATTTGTACTATGATTCATTATACCTTCACCCTGACCAACCCGTGTCATAA
TATTTTGTTTTATAAGAATAAGCCATATGTAATAACATAAAGCTTCCATG
ATTAAAATGTTAGGAACAAGTCAAGAACATTTTAAAGGCTTTGCGGACTC
TAAAACACCCGACTGAAATTGCATAAACACACTCACAAAATGGTGAAATT
GGAATATTTTAAGAAAACATTTGGGCTAAAACTGAAATTAAGAGCATGCG
AAGGGTTCAAAAGTTTTGAACGTTCTTATAAAAAACGTGAGTCAATAAAA
AAAAAGGAGAAATCAATGACAGTTTTGGTTACGGTATGCCAAGATAATCC
ATTGGTTATCTGATATTCCGATGTTAGATTGGTGGCCGTCCACCCTAAGG
CTCTAAGGCAGTGGGTTATTTCCCATCGGATAGAAATGGTAGTAGCCCAG
CACTACAGCACGCTCCAGCTGAGCTCAACTTGGTCTTTTGCGTGTTAAAA
AGATATTTCCCAACTATCAGAGTTTCCGCTTGTCACAAGAGAATTTTGAA
ATTGGGTGCCAGGTAGTGGGTTTGGTGGATTGACCGAGACTCTGGAGGCA
CATTTTCAAACATTGCATTTTGGCCTTCTCTTACCAATAAAGTTTGGCTT
GGTTCACAAATTTGTTTTTGGCGGTCTTTGTCTCTCGGTTTCACAGTAAA
ATAATTGGCTCTGGTAACAGTAGTAAACTGCATTGTCACCATATCTTGAT
AAGATTTTGTTAAAAGAAAGTTTCAAGTCGTTTAAAAATGTTTTCTCCGA
GATTTATCTGATATTCCGATGGCGGATTGGCGGCCGCCCACGATAAAGCT
CTAAAGGAGCGCGCCGATTTCCCATCGGAGAGGAAACTAACTAAGACTCT
AAAACACCTGGATGTAAACGAGAAAAACCGAAAACGAGGGCTGGGTTACA
AGACCTCCCGCTGCAAAATTCTTGATGCGGTCTCGCAAAATTCCGTAATG
TAAACTTTCCAGATGTTGAAAAATTTCCCGACCTTCAGAGCTTTAGCGTG
TCGGAAGAAAATTTCACCATCTGGGTGCCAGATAACTCCAAGATACACAC
AAAAGAACTCCAGCGTGGTAGATTCTACCCCCCTGGGGCTGAAAGTGTTG
ATAGAGATCTTGGTTTTAATTCTCATATATAAAACAGCTTTTTGGTTTGT
GTGTAATTCTCGTATTCCCTATTTCTTTTAGGGATGCCTTGACAAGTTAA
CAGAGTATGTTAAAGACAACTTGATGATTCTTGGCGGTATTGGTGTCGGA
CTGGCATGTATTCAGGTATGAACAAATAGAACTCACTCTATGTGATTATA
AACCATTTAGTGATGATCCTAGCCAAGGTTCTGAGCTAATAGTATAATTT
TGACTTTAAAAAAGATTGTTTACTATTAGCTTACTTGCAAACTCGGTAAA
ACATGCTCGCCTTTGCCGAAGACTCTTCGTATTCCCGAGGCAATGAGTAT
ATTTTGTTATCAAAGGCAAAAATAATACATATTCGATATTCCCAAGAGCA
ATTAAAAATAACAAACTTTTTCTCTTTGTTTTGAACGTGTTATTTATGTT
ATCAAAACAATTAGAACCGACAAATTGTCGTGTTTTTGACAGGGAAAATA
CTAAAATCTGATTGGATGCGAAAAAACGAGCTGCAACGAGATTAGTTTAC
AATCAGGCGTTCGTATAAGTGTAGTGAAAACTTGTTGAGCAGCGGTTATG
CATCACGCATGACACTCTGGCTATGACCCATTGTGAAAAATTAGTTCCTC
AAACACATCCGATGGTCGGGAACTCACATGCTCGACATTCTCCAATCCTA
GTATCCCCGGGTGAAAGTTACACTGCTACCAT

Coding sequence (CDS) from alignment at sc0000390:192761..200892-

>TCONS_00021598 ID=TCONS_00021598|Name=TCONS_00021598|organism=Clytia hemisphaerica|type=CDS|length=4704bp|location=Sequence derived from alignment at sc0000390:192761..200892- (Clytia hemisphaerica)
GGAAAATACTAAGGATGCCTTGACAAGTTAACAGAGTATGTTAAAGACAA
CTTGATGATTCTTGGCGGTATTGGTGTCGGACTGGCATGTATTCAGTTGA
AATGTTGTGGAGTGAAATCGGCAACAGAGTACATCACTTCTGCTTGGAAA
CAGACCACCAACAAGTCTTATCCTCCATCTTGTTGCTCGAATCAACAATC
ATGTGCGATTTCCACACCTGATAATAATCAATTGGTCTACCTGGATATCA
AAGATGAAGTGACAACAGAGGCGCAGAGAGTCATTGAAAAAGAATATGGT
ACAGGAAATTCTGATATCGACCATGCTGTGGATATCTTACAAGAAAAGTA
TTTCACAATGCTTCTCATCATCTTTTGTGCGGAAATTGCTGCTGGTGTCC
TTGGGTTCCTTTACCGAGATAAGCTTGCTGGGTTAGCAGCTGTTGGTGTT
GGCATATGGCTTCTATTTGATCCTGGACGCTTCAACGACTTCTTAGGGAG
ATACACGTTTACAATCCCAGCCTCGATTCTCATTGCAACTGGCCTATTTG
TTTGTATGGTTGGCTTTTGTGGATGTGCTGGTGCAATCAAAGAGAGTAAA
TGTCTTCTCGGCACAATGACTGCGAAGTCTTGCATCAAGTATTTGTTGTT
TTCTTTTAATGTCATATTTTGGGGAAAATACTAAGGATGCCTTGACAAGT
TAACAGAGTATGTTAAAGACAACTTGATGATTCTTGGCGGTATTGGTGTC
GGACTGGCATGTATTCAGTTGAAATGTTGTGGAGTGAAATCGGCAACAGA
GTACATCACTTCTGCTTGGAAACAGACCACCAACAAGTCTTATCCTCCAT
CTTGTTGCTCGAATCAACAATCATGTGCGATTTCCACACCTGATAATAAT
CAATTGGTCTACCTGGATATCAAAGATGAAGTGACAACAGAGGCGCAGAG
AGTCATTGAAAAAGAATATGGTACAGGAAATTCTGATATCGACCATGCTG
TGGATATCTTACAAGAAAAGTATTTCACAATGCTTCTCATCATCTTTTGT
GCGGAAATTGCTGCTGGTGTCCTTGGGTTCCTTTACCGAGATAAGCTTGC
TGGGTTAGCAGCTGTTGGTGTTGGCATATGGCTTCTATTTGATCCTGGAC
GCTTCAACGACTTCTTAGGGAGATACACGTTTACAATCCCAGCCTCGATT
CTCATTGCAACTGGCCTATTTGTTTGTATGGTTGGCTTTTGTGGATGTGC
TGGTGCAATCAAAGAGAGTAAATGTCTTCTCGGCACAATGACTGCGAAGT
CTTGCATCAAGTATTTGTTGTTTTCTTTTAATGTCATATTTTGGGGAAAA
TACTAAGGATGCCTTGACAAGTTAACAGAGTATGTTAAAGACAACTTGAT
GATTCTTGGCGGTATTGGTGTCGGACTGGCATGTATTCAGTTGAAATGTT
GTGGAGTGAAATCGGCAACAGAGTACATCACTTCTGCTTGGAAACAGACC
ACCAACAAGTCTTATCCTCCATCTTGTTGCTCGAATCAACAATCATGTGC
GATTTCCACACCTGATAATAATCAATTGGTCTACCTGGATATCAAAGATG
AAGTGACAACAGAGGCGCAGAGAGTCATTGAAAAAGAATATGGTACAGGA
AATTCTGATATCGACCATGCTGTGGATATCTTACAAGAAAAGTATTTCAC
AATGCTTCTCATCATCTTTTGTGCGGAAATTGCTGCTGGTGTCCTTGGGT
TCCTTTACCGAGATAAGCTTGCTGGGTTAGCAGCTGTTGGTGTTGGCATA
TGGCTTCTATTTGATCCTGGACGCTTCAACGACTTCTTAGGGAGATACAC
GTTTACAATCCCAGCCTCGATTCTCATTGCAACTGGCCTATTTGTTTGTA
TGGTTGGCTTTTGTGGATGTGCTGGTGCAATCAAAGAGAGTAAATGTCTT
CTCGGCACAATGACTGCGAAGTCTTGCATCAAGTATTTGTTGTTTTCTTT
TAATGTCATATTTTGGGGAAAATACTAAGGATGCCTTGACAAGTTAACAG
AGTATGTTAAAGACAACTTGATGATTCTTGGCGGTATTGGTGTCGGACTG
GCATGTATTCAGTTGAAATGTTGTGGAGTGAAATCGGCAACAGAGTACAT
CACTTCTGCTTGGAAACAGACCACCAACAAGTCTTATCCTCCATCTTGTT
GCTCGAATCAACAATCATGTGCGATTTCCACACCTGATAATAATCAATTG
GTCTACCTGGATATCAAAGATGAAGTGACAACAGAGGCGCAGAGAGTCAT
TGAAAAAGAATATGGTACAGGAAATTCTGATATCGACCATGCTGTGGATA
TCTTACAAGAAAAGTATTTCACAATGCTTCTCATCATCTTTTGTGCGGAA
ATTGCTGCTGGTGTCCTTGGGTTCCTTTACCGAGATAAGCTTGCTGGGTT
AGCAGCTGTTGGTGTTGGCATATGGCTTCTATTTGATCCTGGACGCTTCA
ACGACTTCTTAGGGAGATACACGTTTACAATCCCAGCCTCGATTCTCATT
GCAACTGGCCTATTTGTTTGTATGGTTGGCTTTTGTGGATGTGCTGGTGC
AATCAAAGAGAGTAAATGTCTTCTCGGCACAATGACTGCGAAGTCTTGCA
TCAAGTATTTGTTGTTTTCTTTTAATGTCATATTTTGGGGAAAATACTAA
GGATGCCTTGACAAGTTAACAGAGTATGTTAAAGACAACTTGATGATTCT
TGGCGGTATTGGTGTCGGACTGGCATGTATTCAGTTGAAATGTTGTGGAG
TGAAATCGGCAACAGAGTACATCACTTCTGCTTGGAAACAGACCACCAAC
AAGTCTTATCCTCCATCTTGTTGCTCGAATCAACAATCATGTGCGATTTC
CACACCTGATAATAATCAATTGGTCTACCTGGATATCAAAGATGAAGTGA
CAACAGAGGCGCAGAGAGTCATTGAAAAAGAATATGGTACAGGAAATTCT
GATATCGACCATGCTGTGGATATCTTACAAGAAAAGTATTTCACAATGCT
TCTCATCATCTTTTGTGCGGAAATTGCTGCTGGTGTCCTTGGGTTCCTTT
ACCGAGATAAGCTTGCTGGGTTAGCAGCTGTTGGTGTTGGCATATGGCTT
CTATTTGATCCTGGACGCTTCAACGACTTCTTAGGGAGATACACGTTTAC
AATCCCAGCCTCGATTCTCATTGCAACTGGCCTATTTGTTTGTATGGTTG
GCTTTTGTGGATGTGCTGGTGCAATCAAAGAGAGTAAATGTCTTCTCGGC
ACAATGACTGCGAAGTCTTGCATCAAGTATTTGTTGTTTTCTTTTAATGT
CATATTTTGGGGAAAATACTAAGGATGCCTTGACAAGTTAACAGAGTATG
TTAAAGACAACTTGATGATTCTTGGCGGTATTGGTGTCGGACTGGCATGT
ATTCAGTTGAAATGTTGTGGAGTGAAATCGGCAACAGAGTACATCACTTC
TGCTTGGAAACAGACCACCAACAAGTCTTATCCTCCATCTTGTTGCTCGA
ATCAACAATCATGTGCGATTTCCACACCTGATAATAATCAATTGGTCTAC
CTGGATATCAAAGATGAAGTGACAACAGAGGCGCAGAGAGTCATTGAAAA
AGAATATGGTACAGGAAATTCTGATATCGACCATGCTGTGGATATCTTAC
AAGAAAAGTATTTCACAATGCTTCTCATCATCTTTTGTGCGGAAATTGCT
GCTGGTGTCCTTGGGTTCCTTTACCGAGATAAGCTTGCTGGGTTAGCAGC
TGTTGGTGTTGGCATATGGCTTCTATTTGATCCTGGACGCTTCAACGACT
TCTTAGGGAGATACACGTTTACAATCCCAGCCTCGATTCTCATTGCAACT
GGCCTATTTGTTTGTATGGTTGGCTTTTGTGGATGTGCTGGTGCAATCAA
AGAGAGTAAATGTCTTCTCGGCACAATGACTGCGAAGTCTTGCATCAAGT
ATTTGTTGTTTTCTTTTAATGTCATATTTTGGGGAAAATACTAAGGATGC
CTTGACAAGTTAACAGAGTATGTTAAAGACAACTTGATGATTCTTGGCGG
TATTGGTGTCGGACTGGCATGTATTCAGTTGAAATGTTGTGGAGTGAAAT
CGGCAACAGAGTACATCACTTCTGCTTGGAAACAGACCACCAACAAGTCT
TATCCTCCATCTTGTTGCTCGAATCAACAATCATGTGCGATTTCCACACC
TGATAATAATCAATTGGTCTACCTGGATATCAAAGATGAAGTGACAACAG
AGGCGCAGAGAGTCATTGAAAAAGAATATGGTACAGGAAATTCTGATATC
GACCATGCTGTGGATATCTTACAAGAAAAGTATTTCACAATGCTTCTCAT
CATCTTTTGTGCGGAAATTGCTGCTGGTGTCCTTGGGTTCCTTTACCGAG
ATAAGCTTGCTGGGTTAGCAGCTGTTGGTGTTGGCATATGGCTTCTATTT
GATCCTGGACGCTTCAACGACTTCTTAGGGAGATACACGTTTACAATCCC
AGCCTCGATTCTCATTGCAACTGGCCTATTTGTTTGTATGGTTGGCTTTT
GTGGATGTGCTGGTGCAATCAAAGAGAGTAAATGTCTTCTCGGCACAATG
ACTGCGAAGTCTTGCATCAAGTATTTGTTGTTTTCTTTTAATGTCATATT
TTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012112XLOC_012112Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021598-proteinTCONS_00021598-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021598-exon-sc0000390-1575043694:200584..200892TCONS_00021598-exon-sc0000390-1575043694:200584..200892Clytia hemisphaericaexon
TCONS_00021598-exon-sc0000390-1575043694:196284..196475TCONS_00021598-exon-sc0000390-1575043694:196284..196475Clytia hemisphaericaexon
TCONS_00021598-exon-sc0000390-1575043694:195959..196033TCONS_00021598-exon-sc0000390-1575043694:195959..196033Clytia hemisphaericaexon
TCONS_00021598-exon-sc0000390-1575043694:195526..195627TCONS_00021598-exon-sc0000390-1575043694:195526..195627Clytia hemisphaericaexon
TCONS_00021598-exon-sc0000390-1575043694:195044..195193TCONS_00021598-exon-sc0000390-1575043694:195044..195193Clytia hemisphaericaexon
TCONS_00021598-exon-sc0000390-1575043694:193328..193411TCONS_00021598-exon-sc0000390-1575043694:193328..193411Clytia hemisphaericaexon
TCONS_00021598-exon-sc0000390-1575043694:192761..193000TCONS_00021598-exon-sc0000390-1575043694:192761..193000Clytia hemisphaericaexon
TCONS_00021598-exon-sc0000390-1510915933:200584..200892TCONS_00021598-exon-sc0000390-1510915933:200584..200892Clytia hemisphaericaexon
TCONS_00021598-exon-sc0000390-1510915933:196284..196475TCONS_00021598-exon-sc0000390-1510915933:196284..196475Clytia hemisphaericaexon
TCONS_00021598-exon-sc0000390-1510915933:195959..196033TCONS_00021598-exon-sc0000390-1510915933:195959..196033Clytia hemisphaericaexon
TCONS_00021598-exon-sc0000390-1510915933:195526..195627TCONS_00021598-exon-sc0000390-1510915933:195526..195627Clytia hemisphaericaexon
TCONS_00021598-exon-sc0000390-1510915933:195044..195193TCONS_00021598-exon-sc0000390-1510915933:195044..195193Clytia hemisphaericaexon
TCONS_00021598-exon-sc0000390-1510915933:193328..193411TCONS_00021598-exon-sc0000390-1510915933:193328..193411Clytia hemisphaericaexon
TCONS_00021598-exon-sc0000390-1510915933:192761..193000TCONS_00021598-exon-sc0000390-1510915933:192761..193000Clytia hemisphaericaexon
TCONS_00021598-exon-sc0000390-1491911889:200584..200892TCONS_00021598-exon-sc0000390-1491911889:200584..200892Clytia hemisphaericaexon
TCONS_00021598-exon-sc0000390-1491911889:196284..196475TCONS_00021598-exon-sc0000390-1491911889:196284..196475Clytia hemisphaericaexon
TCONS_00021598-exon-sc0000390-1491911889:195959..196033TCONS_00021598-exon-sc0000390-1491911889:195959..196033Clytia hemisphaericaexon
TCONS_00021598-exon-sc0000390-1491911889:195526..195627TCONS_00021598-exon-sc0000390-1491911889:195526..195627Clytia hemisphaericaexon
TCONS_00021598-exon-sc0000390-1491911889:195044..195193TCONS_00021598-exon-sc0000390-1491911889:195044..195193Clytia hemisphaericaexon
TCONS_00021598-exon-sc0000390-1491911889:193328..193411TCONS_00021598-exon-sc0000390-1491911889:193328..193411Clytia hemisphaericaexon
TCONS_00021598-exon-sc0000390-1491911889:192761..193000TCONS_00021598-exon-sc0000390-1491911889:192761..193000Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000390supercontigsc0000390:192761..200892 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.59607	2.49664	2.14403	1.21801	16.2354	11.1055	10.738	9.96941	10.5638	11.6803	11.7325	10.7952	18.6279	19.0547	13.8515	17.034	12.1982	12.1741	10.0118	9.92662	16.7642	17.4727	6.34714	8.51024	8.07866	10.8333	7.29779	5.52112	3.96147	2.87581
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000301Tetraspanin
IPR018499Tetraspanin/Peripherin
IPR008952Tetraspanin_EC2
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
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BLAST of TCONS_00021598 vs. Swiss-Prot (Human)
Match: TSN11 (Tetraspanin-11 OS=Homo sapiens GN=TSPAN11 PE=2 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 1.216e-42
Identity = 80/219 (36.53%), Postives = 119/219 (54.34%), Query Frame = 1 
Query:  271 IKYLLFSFNVIFWLAGLAAVGVGIWLLFDPGRFNDFLGRYTFTIPASILIATGLFVCMVGFCGCAGAIKESKCLLGTYFTMLLIIFCAEIAAGVLGFLYRDKIKDEVTTEAQRVIEKEYGT-GNSDIDHAVDILQEKLKCCGVKSATEYITSAW---KQTTNKSYPPSCCSN-QQSCAISTPDNNQLVYLDGCLDKLTEYVKDNLMILGGIGVGLACIQ 912
            +KYLLF FN  FW+ G A + VGIW L +   +   L   TF   A ILI  G+ V + GF G    + E K  L TYF +LL+IF  E+ AGVL  +Y  ++ DE+     R + + YG  G + I  +VD LQ+  KCCG  S+ ++  S +   ++   +  P SCC      C      +N      GCL KL +++ D+L+++G +G+G+AC+Q
Sbjct:   16 LKYLLFVFNFFFWVGGAAVLAVGIWTLVEKSGYLSVLASSTFAASAYILIFAGVLVMVTGFLGFGAILWERKGCLSTYFCLLLVIFLVELVAGVLAHVYYQRLSDELKQHLNRTLAENYGQPGATQITASVDRLQQDFKCCGSNSSADWQHSTYILLREAEGRQVPDSCCKTVVVRCGQRAHPSNIYKVEGGCLTKLEQFLADHLLLMGAVGIGVACLQ 234
The following BLAST results are available for this feature:
BLAST of TCONS_00021598 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSN111.216e-4236.53Tetraspanin-11 OS=Homo sapiens GN=TSPAN11 PE=2 SV=... [more]
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