TCONS_00021598-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00021598-protein
Unique NameTCONS_00021598-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length223

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00021598-protein ID=TCONS_00021598-protein|Name=TCONS_00021598-protein|organism=Clytia hemisphaerica|type=polypeptide|length=223bp
MTAKSCIKYLLFSFNVIFWLAGLAAVGVGIWLLFDPGRFNDFLGRYTFTI
PASILIATGLFVCMVGFCGCAGAIKESKCLLGTYFTMLLIIFCAEIAAGV
LGFLYRDKIKDEVTTEAQRVIEKEYGTGNSDIDHAVDILQEKLKCCGVKS
ATEYITSAWKQTTNKSYPPSCCSNQQSCAISTPDNNQLVYLDGCLDKLTE
YVKDNLMILGGIGVGLACIQGKY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012112XLOC_012112Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00021598TCONS_00021598Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000301Tetraspanin
IPR018499Tetraspanin/Peripherin
IPR008952Tetraspanin_EC2
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000301TetraspaninPRINTSPR00259TMFOURcoord: 9..32
score: 45.66
coord: 48..74
score: 36.33
coord: 75..103
score: 45.12
coord: 208..223
score: 15.68
IPR000301TetraspaninPIRSFPIRSF002419Tetraspanincoord: 2..222
e-value: 1.6E-63
score: 212.1
IPR018499Tetraspanin/PeripherinPFAMPF00335Tetraspannincoord: 7..220
e-value: 3.1E-54
score: 184.0
IPR008952Tetraspanin, EC2 domainGENE3D1.10.1450.10coord: 103..206
e-value: 1.4E-18
score: 66.5
IPR008952Tetraspanin, EC2 domainSUPERFAMILY48652Tetraspanincoord: 103..206

Blast
[Close]
BLAST of TCONS_00021598-protein vs. Swiss-Prot (Human)
Match: TSN11 (Tetraspanin-11 OS=Homo sapiens GN=TSPAN11 PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.404e-45
Identity = 80/219 (36.53%), Postives = 119/219 (54.34%), Query Frame = 0 
Query:    7 IKYLLFSFNVIFWLAGLAAVGVGIWLLFDPGRFNDFLGRYTFTIPASILIATGLFVCMVGFCGCAGAIKESKCLLGTYFTMLLIIFCAEIAAGVLGFLYRDKIKDEVTTEAQRVIEKEYGT-GNSDIDHAVDILQEKLKCCGVKSATEYITSAW---KQTTNKSYPPSCCSN-QQSCAISTPDNNQLVYLDGCLDKLTEYVKDNLMILGGIGVGLACIQ 220
            +KYLLF FN  FW+ G A + VGIW L +   +   L   TF   A ILI  G+ V + GF G    + E K  L TYF +LL+IF  E+ AGVL  +Y  ++ DE+     R + + YG  G + I  +VD LQ+  KCCG  S+ ++  S +   ++   +  P SCC      C      +N      GCL KL +++ D+L+++G +G+G+AC+Q
Sbjct:   16 LKYLLFVFNFFFWVGGAAVLAVGIWTLVEKSGYLSVLASSTFAASAYILIFAGVLVMVTGFLGFGAILWERKGCLSTYFCLLLVIFLVELVAGVLAHVYYQRLSDELKQHLNRTLAENYGQPGATQITASVDRLQQDFKCCGSNSSADWQHSTYILLREAEGRQVPDSCCKTVVVRCGQRAHPSNIYKVEGGCLTKLEQFLADHLLLMGAVGIGVACLQ 234
The following BLAST results are available for this feature:
BLAST of TCONS_00021598-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSN111.404e-4536.53Tetraspanin-11 OS=Homo sapiens GN=TSPAN11 PE=2 SV=... [more]
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