|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021538 ID=TCONS_00021538|Name=TCONS_00021538|organism=Clytia hemisphaerica|type=transcript|length=810bp
GAAAAATGCATCAAAATGTGATGCTTTAGTCTGAAATAGTGAGATAATTT
agctcaaaaagttttgaaaatctaATTTGCTAATCGAAAGTGTACTATTG
TTGGCGTTCAAACTAAAATTTGGTTTAGAGTAGTAATTCGGAGAAAATAA
ATAGAGTTTAGTCAACAATTTGGTACCGTATTAATGTCCTCGCTGAACTT
TCACGTTTCTTTTTGAGAATCAGTGAAGGCAAGATGGCTAAGCCAAAGCA
GGGTGGAAAAGACAAGGCAAAGGCTTTGAAAGCCAAAAAGGCTGTCACCA
AAGGACGTAAGGTGACCAAGGAAAGAAAAGTCAGAACTGCAGTCCAATTT
CATCGACCAAAGACCTTGAGTTTGCCAAGAACTGGATTATACCCACGGAA
ATCTGCACCCAAGACCACCAGATTAGATCAATTTGCTATCATTAAGCACC
CATTGACCACTGAatctgctatgaaaaaaattgaagagaaCAATACTCTG
GTCTTTATTGTTGATACTAGAGCTAGCAAACCACAAATCAAGCTTGCTGT
CAAGAAATTATACGATATCCACGTTGCTAAAGTCAATACTCTTATCAGaC
CTGATGGAATGAAGAAAGCATACGTACGATTGGCCACTGATTACGATGCA
TTGGATGTTGCCAACAAAattggTATCATCTAGACAGAAACTAGTCACCA
TCCTTGCCTTGAAATACacagaaaaatccaaaaataatgTTGTTGTTTGA
ATCCCTGTCTTTATTTAAGAATTTTGAGTCGTGAGTTGGAAATATTGAGC
GGGGAAGCct Run BLAST on NCBI protein sequence of TCONS_00021538-protein >TCONS_00021538-protein ID=TCONS_00021538-protein|Name=TCONS_00021538-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MAKPKQGGKDKAKALKAKKAVTKGRKVTKERKVRTAVQFHRPKTLSLPRT
GLYPRKSAPKTTRLDQFAIIKHPLTTESAMKKIEENNTLVFIVDTRASKP
QIKLAVKKLYDIHVAKVNTLIRPDGMKKAYVRLATDYDALDVANKIGII Run BLAST on NCBI transcript from alignment at sc0000389:178584..184100+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021538 ID=TCONS_00021538|Name=TCONS_00021538|organism=Clytia hemisphaerica|type=transcript|length=5517bp|location=Sequence derived from alignment at sc0000389:178584..184100+ (Clytia hemisphaerica)
GAAAAATGCATCAAAATGTGATGCTTTAGTCTGAAATAGTGAGATAATTT
agctcaaaaagttttgaaaatctaATTTGCTAATCGAAAGTGTACTATTG
TTGGCGTTCAAACTAAAATTTGGTTTAGAGTAGTAATTCGGAGAAAATAA
ATAGAGTTTAGTCAACAATTTGGTACCGTATTAATGTCCTCGCTGAACTT
TCACGTTTCTTTTTGAGAATCAGTGAAGGCAAGATGGCTAAGCCAAAGCA
GGGTAAGGCATTCCAATGTTTTTATTATTGACGGTTGATATCACAATATG
AAATTGTTGTATGGATAACAGATTTTAGAAGTAATGAATTTGTTTGGATA
GGCTATGATTTAAAGAATTACTTTTTATGTGCTGAGGGAGCACCACcatt
aatattttgttttttctctttGAATATATTTAGGTGGAAAAGACAAGGCA
AAGGCTTTGAAAGCCAAAAAGGCTGTCACCAAAGGACGTAAGGTGACCAA
GGAAAGAAAAGTCAGAACTGCAGTCCAATTTCATCGACCAAAGACCTTGA
GTTTGCCAAGAACTGGATTATACCCACGGAAATCTGCACCCAAGACCACC
AGATTAGATCAATTTGCTATCATTAAGCACCCATTGACCACTGAatctgc
tatgaaaaaaattgaagagaaCAATACTCTGGTCTTTATTGTTGATACTA
GAGCTAGCAAACCACAAATCAAGCTTGCTGTCAAGAAATTATACGATATC
CACGTTGCTAAAGTCAATACTCTTATCAGGTAATAATGATACAAATCAAA
AGGTTTTTTGCCCTTTATAACAGTACCAATAATGATACTTTGTACTACTT
GTCCATGCCAAATCAATGGATTGATAGTGTAATTAATGTGTGTGTACCAT
ACATAATATGCTAACATAAattatcatgatattgaaaataaaaagtttta
attgaggggtgacgtccatattcaaagtcACCACACGTAACAGGAAAAGA
CCGTTAgtacagtctgggaaatcctctcaattgcacgcttatgttccgag
ggtgaaggcatggtttaactggcaatccatttttacggaatcttctacga
taaattttgagtaaaactgccctaggcttttgaaattcaacagagttttc
ggaaggaattgcgtgtcagaataataaagggtgcaattgcacgcttgcAG
CTTACtgcccgtttcagaacaatttcgataagcgtgtaattacatctgga
tttcccagactgtagTAGGTAGGTATATCGGAATGTTGAGAGTAAGCTGT
GGTATTGATGACCAAAACGAAATTCCATTaaaaattcaatagaaaaaatg
aaagacCCTTTATCGTAGCGCTCACTTATTTACTTTTTCCTTTAGGGGCC
GTTGACATttgactttcgaattttttaacggcatttggccgttaaggggg
gggagggggtcgacCATGTGCCGTTAAGGGAATGTCAAAATCTCTTTAGG
GGTCAACTCACCATATCAATTCTTTTCAccagaaaatattgatttttgag
acgtttattccatacaaatgttactttccatatttcttttcctcctttta
tcaACTACTAAGATCTGCTAAAGTTTCATACCTAGTATTCACTATATTAA
GTATTCACTTCgctattttttagaataattttaaccaaaacaaacaaccc
gatgtttatgtctcgtgttccttttgtttagacggtccgcacggcccttg
aattttgcagacggtcggtctttttttctttgaaatgccgCTATTCTTTT
GAGTATgattacggagataattaattcgcccaactttcggaaaaaagttt
agaaattatctccattatttttaaaatgtaaactgagcgAAGCCGTAGCg
atattaaagatggctgacgaaacaacgatgaaagtgaaggatAAAACTTa
gagtttcatcgatttttgacaattttttaactttagagaaTTTGACGGCC
AAATGctgttaaaaaattcgaaagttgaatgtcgacggccccttaGCACG
CTATCCAAAATCCTTCCCTGAGCAATTTTAGGGGTTGTTTCAGAGTATAA
CATTTTTGCCTCAGAGTTTTAAAAACCAAGGCTGTTTAACAATTGTGAAT
TCGGCCGTTGTAAACCTCCAGAAATGGCAACATTTTTAGCGggctgtttg
ttttgattttagcaggAATGGAAGCTTCAGTAAGATTTTGGTTAAATTAT
GAAGAccattaaccctttaactgcccatgtcggcatatggcgacatgagc
attttggatttctttgcccatgtcgggatttgccgacatgagcattttcg
atttctttgcccatgtcgggatttgccgacatcgGCACTTTCCATTCCTT
TGCCCAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNttctacaaagattttgtattagatggtttg
aaatgaaaaaagatgatagttaaaagcttttctatgttgaaaaataacta
ttcaacaatgttcaactcaaaattttagtccttggctgatacttcatata
ttattcagaaaatgaagtcaaaatcgctaccttttgaccatgtcggcata
tgccgacatctggcaaataggtcgaaccttctttttttcccgtggcaaat
aggtcgaacctttttTTTTCCCGCGGCAAATAGGTCGTACCTTAAAAAAA
CGacgggcagttaaagggttaaggcggtcatcgaaaaattgttctattcg
cgtcacccgcccgcatcaaatcTTCCGCTGATTTTCTGGTGCGGAGattc
tgggaaaagcaatttgttcttttaaagtatagcttttttctcaattgctc
tgacgaccatcgaaaaattgttttgcttgcgttaccacccgccccgGAGT
TACTGGTGTGAataaaaaaaacccgggaatttTTTTTGACCGCCTGtccg
tccgcccgcatgcatttttaatacCTGTTGcaacgcgaacagagcatttt
ttcgatgaccgcctaagaAGGTGGATAGGTATGTTTTGAAagtaacggtc
ttttcccgttacgcgtTGCAACTTTGAAAATGGACGTTGCCCCTAAAATA
CcttataaaatgaaaacaattaaaGCTAAAACAGGGCTGCAAGAAGAAGT
AGTTGATAAAGAGCTAAGATTATCAAAATATGACTGAAGCTGAAAGACAC
TACCACCAGGATATAGTAATATAATATCTGGTCTGCCCCTGTTCCGGGCT
AGGTTTGAAGGCAAAATAATTGATCAATAAATACGAGTATCGTTGATTTT
GAGCCAAAAGAATGTTCCAAATATCATTCGGAACAAGTGGCAAATTAGCT
TGGTCATGTTTGGGACTTTCCAAGTACAAAAACAACCCTCTGTATGGCCT
AAACATGCTAAGGCCAATTAGTCATGGCAGAATGTGGCGGTCTTTAAACT
AATAACTCCAACATAAATAAATGATTCTAGCAAAGTAATGTAtgctggag
taatttgttattcaattctTCAACTTAAATATTATTAAATGGCCCGGAAA
AGTTTAGGCCATACTGTGGTTCCCactaaatttgttgaaagaaagCCAGG
CATATCCAAAGCCAGGTATCCAAAGAACACTTTTGACCGGTATTAGGGAA
GTTTTTGGTTAAactaattttatgattttatagaCCTGATGGAATGAAGA
AAGCATACGTACGATTGGCCACTGATTACGATGCATTGGATGTTGCCAAC
AAAGTGAgttatttttagtttgaaaatttttccaccGAGTAAACTGAACT
TTACTTAAAAACTTTCTGGAcctgaaattttggaaaatattaaaGGGCTT
ACTTACATTACAAGCTTAAAAATAgcaaatctttttatttttcttattgt
tttaatatattaaaatctaattaattgtcttgaagtaaaatatatttgaa
aaattgaataaaaagcttttcggcttacgccatcatcagttatcatacaa
gtaaaaagaaagtaacaaatttattgaaaaaattggaNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNGGGTTCTGATTTATGATTGGGGTTCCCATGTTC
AGTCCATCTAACTTCAACATTACGATTCGTTTCCCCGATATAATTCTCTC
CACAATCACATAAAcccccataaattttgcaggagGGTTTATGAGGGTTT
ATGTGATTGTGGAGAGAATTATATCGGGGAAACGAATCGTAATGTTGAAG
TTAGATGGACTGAACATGGGAACCCCAATCATAAATCAGAACCCGCTAAA
CACCTACTCAACAACCCAGATCACTCTTTTGTTTGGAAATTAATCTTCAA
CGCGTCAAAATtctcaacacaaagaaaaatctTGGAGGCATTCTTTATTG
CCACCAAAGGACCTAGTTTGAATAACCAAATAGACACTCGTAGCCTTATG
CTTTTCAGAAATGGAGTCACGTGAGACTTAATGATATTTATAGCTTTTTA
ATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNtccaattttttcaataaatttgttactttctttttacttgtat
gataactgatgatggcgtaagccgaaaagctttttattcaatttttcaaa
tatattttacttCAAAACTTAACATGGCGAAAATTCACTTAATTAATTGT
CCTATGCGAAGATTCTAATAAGTATTTGAATTTGTTATCCATTCATGAGG
TCATTACTTACTATTCAATTTGGTAATTAAGCTTTTCAACACATAACTCA
ATTTTCTgtctgttttatttttcagattggTATCATCTAGACAGAAACTA
GTCACCATCCTTGCCTTGAAATACacagaaaaatccaaaaataatgTTGT
TGTTTGAATCCCTGTCTTTATTTAAGAATTTTGAGTCGTGAGTTGGAAAT
ATTGAGCGGGGAAGCct Coding sequence (CDS) from alignment at sc0000389:178584..184100+ >TCONS_00021538 ID=TCONS_00021538|Name=TCONS_00021538|organism=Clytia hemisphaerica|type=CDS|length=1800bp|location=Sequence derived from alignment at sc0000389:178584..184100+ (Clytia hemisphaerica)
ATGGCTAAGCCAAAGCAGGGTGGAAAAGACAAGGCAAAGGCTTTGAAAGC
CAAAAAGGCTGTCACCAAAGGACGTAAGGTGACCAAGGAAAGAAAAGTCA
GAACTGCAGTCCAATTTCATCGACCAAAGACCTTGAGTTTGCCAAGAACT
GGATTATACCCACGGAAATCTGCACCCAAGACCACCAGATTAGATCAATT
TGCTATCATTAAGCACCCATTGACCACTGAatctgctatgaaaaaaattg
aagagaaCAATACTCTGGTCTTTATTGTTGATACTAGAGCTAGCAAACCA
CAAATCAAGCTTGCTGTCAAGAAATTATACGATATCCACGTTGCTAAAGT
CAATACTCTTATCAGaCCTGATGGAATGAAGAAAGCATACGTACGATTGG
CCACTGATTACGATGCATTGGATGTTGCCAACAAAattggTATCATCTAG
ATGGCTAAGCCAAAGCAGGGTGGAAAAGACAAGGCAAAGGCTTTGAAAGC
CAAAAAGGCTGTCACCAAAGGACGTAAGGTGACCAAGGAAAGAAAAGTCA
GAACTGCAGTCCAATTTCATCGACCAAAGACCTTGAGTTTGCCAAGAACT
GGATTATACCCACGGAAATCTGCACCCAAGACCACCAGATTAGATCAATT
TGCTATCATTAAGCACCCATTGACCACTGAatctgctatgaaaaaaattg
aagagaaCAATACTCTGGTCTTTATTGTTGATACTAGAGCTAGCAAACCA
CAAATCAAGCTTGCTGTCAAGAAATTATACGATATCCACGTTGCTAAAGT
CAATACTCTTATCAGaCCTGATGGAATGAAGAAAGCATACGTACGATTGG
CCACTGATTACGATGCATTGGATGTTGCCAACAAAattggTATCATCTAG
ATGGCTAAGCCAAAGCAGGGTGGAAAAGACAAGGCAAAGGCTTTGAAAGC
CAAAAAGGCTGTCACCAAAGGACGTAAGGTGACCAAGGAAAGAAAAGTCA
GAACTGCAGTCCAATTTCATCGACCAAAGACCTTGAGTTTGCCAAGAACT
GGATTATACCCACGGAAATCTGCACCCAAGACCACCAGATTAGATCAATT
TGCTATCATTAAGCACCCATTGACCACTGAatctgctatgaaaaaaattg
aagagaaCAATACTCTGGTCTTTATTGTTGATACTAGAGCTAGCAAACCA
CAAATCAAGCTTGCTGTCAAGAAATTATACGATATCCACGTTGCTAAAGT
CAATACTCTTATCAGaCCTGATGGAATGAAGAAAGCATACGTACGATTGG
CCACTGATTACGATGCATTGGATGTTGCCAACAAAattggTATCATCTAG
ATGGCTAAGCCAAAGCAGGGTGGAAAAGACAAGGCAAAGGCTTTGAAAGC
CAAAAAGGCTGTCACCAAAGGACGTAAGGTGACCAAGGAAAGAAAAGTCA
GAACTGCAGTCCAATTTCATCGACCAAAGACCTTGAGTTTGCCAAGAACT
GGATTATACCCACGGAAATCTGCACCCAAGACCACCAGATTAGATCAATT
TGCTATCATTAAGCACCCATTGACCACTGAatctgctatgaaaaaaattg
aagagaaCAATACTCTGGTCTTTATTGTTGATACTAGAGCTAGCAAACCA
CAAATCAAGCTTGCTGTCAAGAAATTATACGATATCCACGTTGCTAAAGT
CAATACTCTTATCAGaCCTGATGGAATGAAGAAAGCATACGTACGATTGG
CCACTGATTACGATGCATTGGATGTTGCCAACAAAattggTATCATCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021538-exon-sc0000389-1491911889:178584..178835 | TCONS_00021538-exon-sc0000389-1491911889:178584..178835 | Clytia hemisphaerica | exon |
| TCONS_00021538-exon-sc0000389-1510915933:178584..178835 | TCONS_00021538-exon-sc0000389-1510915933:178584..178835 | Clytia hemisphaerica | exon |
| TCONS_00021538-exon-sc0000389-1575043694:178584..178835 | TCONS_00021538-exon-sc0000389-1575043694:178584..178835 | Clytia hemisphaerica | exon |
| TCONS_00021538-exon-sc0000389-1491911889:179017..179362 | TCONS_00021538-exon-sc0000389-1491911889:179017..179362 | Clytia hemisphaerica | exon |
| TCONS_00021538-exon-sc0000389-1510915933:179017..179362 | TCONS_00021538-exon-sc0000389-1510915933:179017..179362 | Clytia hemisphaerica | exon |
| TCONS_00021538-exon-sc0000389-1575043694:179017..179362 | TCONS_00021538-exon-sc0000389-1575043694:179017..179362 | Clytia hemisphaerica | exon |
| TCONS_00021538-exon-sc0000389-1491911889:182417..182486 | TCONS_00021538-exon-sc0000389-1491911889:182417..182486 | Clytia hemisphaerica | exon |
| TCONS_00021538-exon-sc0000389-1510915933:182417..182486 | TCONS_00021538-exon-sc0000389-1510915933:182417..182486 | Clytia hemisphaerica | exon |
| TCONS_00021538-exon-sc0000389-1575043694:182417..182486 | TCONS_00021538-exon-sc0000389-1575043694:182417..182486 | Clytia hemisphaerica | exon |
| TCONS_00021538-exon-sc0000389-1491911889:183959..184100 | TCONS_00021538-exon-sc0000389-1491911889:183959..184100 | Clytia hemisphaerica | exon |
| TCONS_00021538-exon-sc0000389-1510915933:183959..184100 | TCONS_00021538-exon-sc0000389-1510915933:183959..184100 | Clytia hemisphaerica | exon |
| TCONS_00021538-exon-sc0000389-1575043694:183959..184100 | TCONS_00021538-exon-sc0000389-1575043694:183959..184100 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000389 | supercontig | sc0000389:178584..184100 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005840 | ribosome |
| GO:0005622 | intracellular |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003735 | structural constituent of ribosome |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006412 |
translation |
| cellular_component |
GO:0005622 |
intracellular |
| cellular_component |
GO:0005840 |
ribosome |
| molecular_function |
GO:0003735 |
structural constituent of ribosome |
Blast
BLAST of TCONS_00021538 vs. Swiss-Prot (Human)
Match: RL23A (60S ribosomal protein L23a OS=Homo sapiens GN=RPL23A PE=1 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 6.152e-56 Identity = 93/121 (76.86%), Postives = 103/121 (85.12%), Query Frame = 3
Query: 318 KERKVRTAVQFHRPKTLSLPRTGLYPRKSAPKTTRLDQFAIIKHPLTTESAMKKIEENNTLVFIVDTRASKPQIKLAVKKLYDIHVAKVNTLIRPDGMKKAYVRLATDYDALDVANKIGII 680
K++K+RT+ F RPKTL L R YPRKSAP+ +LD +AIIK PLTTESAMKKIE+NNTLVFIVD +A+K QIK AVKKLYDI VAKVNTLIRPDG KKAYVRLA DYDALDVANKIGII
Sbjct: 36 KKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156
The following BLAST results are available for this feature:
|
