TCONS_00021538-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00021538-protein
Unique NameTCONS_00021538-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length149

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00021538-protein ID=TCONS_00021538-protein|Name=TCONS_00021538-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MAKPKQGGKDKAKALKAKKAVTKGRKVTKERKVRTAVQFHRPKTLSLPRT
GLYPRKSAPKTTRLDQFAIIKHPLTTESAMKKIEENNTLVFIVDTRASKP
QIKLAVKKLYDIHVAKVNTLIRPDGMKKAYVRLATDYDALDVANKIGII
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_012076XLOC_012076Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00021538TCONS_00021538Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019985Ribosomal_L23
IPR005633Ribosomal_L23/L25_N
IPR013025Ribosomal_L25/23
IPR001014Ribosomal_L23/L25_CS
IPR012678Ribosomal_L23/L15e_core_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019985Ribosomal protein L23TIGRFAMTIGR03636TIGR03636coord: 73..149
e-value: 2.8E-30
score: 102.5
IPR005633Ribosomal protein L23/L25, N-terminalPFAMPF03939Ribosomal_L23eNcoord: 11..60
e-value: 3.9E-19
score: 68.5
NoneNo IPR availableGENE3D3.30.70.330coord: 65..149
e-value: 2.6E-34
score: 116.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33
IPR013025Ribosomal protein L25/L23PFAMPF00276Ribosomal_L23coord: 69..132
e-value: 5.1E-16
score: 58.7
IPR013025Ribosomal protein L25/L23HAMAPMF_01369_ARibosomal_L23_Acoord: 69..149
score: 22.896
IPR001014Ribosomal protein L23/L25, conserved sitePROSITEPS00050RIBOSOMAL_L23coord: 127..142
IPR012678Ribosomal protein L23/L15e core domainSUPERFAMILY54189Ribosomal proteins S24e, L23 and L15ecoord: 67..142

Blast
[Close]
BLAST of TCONS_00021538-protein vs. Swiss-Prot (Human)
Match: RL23A (60S ribosomal protein L23a OS=Homo sapiens GN=RPL23A PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 2.474e-59
Identity = 93/121 (76.86%), Postives = 103/121 (85.12%), Query Frame = 0 
Query:   29 KERKVRTAVQFHRPKTLSLPRTGLYPRKSAPKTTRLDQFAIIKHPLTTESAMKKIEENNTLVFIVDTRASKPQIKLAVKKLYDIHVAKVNTLIRPDGMKKAYVRLATDYDALDVANKIGII 149
            K++K+RT+  F RPKTL L R   YPRKSAP+  +LD +AIIK PLTTESAMKKIE+NNTLVFIVD +A+K QIK AVKKLYDI VAKVNTLIRPDG KKAYVRLA DYDALDVANKIGII
Sbjct:   36 KKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156
The following BLAST results are available for this feature:
BLAST of TCONS_00021538-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL23A2.474e-5976.8660S ribosomal protein L23a OS=Homo sapiens GN=RPL2... [more]
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