|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021440 ID=TCONS_00021440|Name=TCONS_00021440|organism=Clytia hemisphaerica|type=transcript|length=709bp
TTTTGCTCAGAAAAGTATACGAACGAATAATGACGATACTTCATAATAAG
ACGACCAGCTCCTTTGATACAAGACGGTTTTAGGCatctcaaaattgaca
atttcataatattgaagaggagaatgacacagcacatatctataaaaGGT
GATAGACGTCAATAGGAATGATCAACATCAAATAGATTTTGCTCAGAAAA
GTAAACGAACGAGGAATGACGATAGTTCATAATAAGACGACCAGCTCCTT
TGATACCAGACGGTTTTAGGCatctcaaaattgacaatttcataatATTG
AAGAGGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTTTGATACAAGACGGTTTTAGGCatctc
aaaattgacaatttcataatattgaagaggagaatgacacagcacatatc
tataaaagtaAGTTTCTCAAATCTTTGGTAATTTTGGTTCATTTGGAACA
TCTCTATCTCTCCTATTTTTCGTTCGGAACCTGACCCTGTGAAAGatttg
tatgagaaaggcaactgcatacactttatttaaaactattggctgaaact
ctaaagcaagctttgaaaataaaactactGACTTTCTACCACAACAATTT
TGGAATGTTGTTGATTTCTGGGTGctatttttggctgattgtttcatttt
cccatgttc Run BLAST on NCBI transcript from alignment at sc0000386:75868..82129+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021440 ID=TCONS_00021440|Name=TCONS_00021440|organism=Clytia hemisphaerica|type=transcript|length=6262bp|location=Sequence derived from alignment at sc0000386:75868..82129+ (Clytia hemisphaerica)
TTTTGCTCAGAAAAGTATACGAACGAATAATGACGATACTTCATAATAAG
ACGACCAGCTCCTTTGATACAAGACGGTTTTAGGCatctcaaaattgaca
atttcataatattgaagaggagaatgacacagcacatatctataaaagta
AGTTTCTCCAATCTTTGGTAATTTTGGTTCGTTTGGAACATCTCTATCTC
TCCTATTTTTTTGTTCTGAACCTGACCCTGTGAAAGatttgtatgagaaa
ggcaactgcatacactttattTAAAACTATTGGCTGAAACTCTTAAGCAA
GCTTTGAAAATAGAACTGCTGACTTTCTACCACAACAGTTTTGGAATGTT
GTTGATTTCGGGGTGctatttttggctgattgttTCATTTTNTTGGAATG
TTGTTGATTTCGGGGTGctatttttggctgattgtttcattttcccatgt
tcaaaatacgaaccgtggaaacatactctttcttattcaaataggaaaaa
tgatctgttatgatttattaaacaatcttccaaataCAATATGTAACACT
TATTACCAAAGCAACTCATTAAACTCTGTGTCATTGAGGCCCTGAAGTTA
ACAATATACCATATAAATCAATTACATCAGTCTTTAGCATTCCAATGAAA
AGCTTGCAATAttcgagttttcatttttgaaagtgatgtctttttttaac
ttttctagAGACACTCACCTGAAAAAGcctttaatttgtaaaaatgctGC
TCCCACGTGATGAACCTTGTTTGCGAATGGATAAATATACTTTTAAAAAC
TATGGGGACTTTTTTATCCCAAAATTGATTTATCTGATATATGTTTATCA
TAATCAGTCTGCTTTTCTGgcttttcttcttaattttatttAGGGTGAAC
GACGTCAATAGGAATGATCAACATCAAATAGATTTTTCTCAGAAAAGAAT
ACGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATATCTATAAAAGT
AAGTTTCTCGAATCTTTGGTAATTTTGGTTCATTTGGAACATCTCTATCT
CTCCTATTTTTCGTTCGGGACCTGACCCTGTGTAAAATTTGTATAAGAAA
AgcaactgcatacactttattTAAAACTATTGGCTGAAGCTCTTAAGCAA
GCTTTGAAAATAGAACTACTGACTTTCTACCACAACAGTTTTGGAATGTC
GTTGATTTCGGGGTGctatttttggctgattgtttcatttttcgcATGTT
CAAAATACGAACCTTGGaaacatactctttcttattcaaataagaaaaat
gatctgttatgatttattaaacaatcttccaaaaacaataTGTAACACAT
ATTACCAAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCTCCTTTGATAC
AAGACGGTTTTAGGCatctcaaaattgacaatttcataatattgaagagg
agaatgacacagcacatatctataaaagtaAGTTTCCCGAATCTTTGGTA
ATTTTGGTTCATTTGGAACATCTCTATCTCTCCTATTTTTCGTTCTGAAC
CTGACCATGTGAAAGatttgtatgagaaaggcaactgccNGAGCTAAATC
TATTTGATGTTGATCATTCCTATTGACGTCGTTCACCCTaaataaaatta
agaagaaaagcCAGAAAAACAGACTGTTTTTGATAAACTTAGAAAGGATA
AATCATTTTTGGGATAAAAAAGTCCCcatagtttttaaaagtttatttat
cCATTCGANGAAAACTATGGGGAGTTTTTTATcctttctatgtttatcaa
aaacagtctgtttttctggcttttcttcttaattttatttAGGGTGAACG
AGGTCAATAGGAATGTTCAACATCAAATAGATTTTGCTCAGAAAAGTATA
CGAACGAATAATGACGATAGTTCATAATAAGACGACCAGCTCCTTTGATA
CAAGACAGTTTTAGGCatctcaaaattgacaatttcataatATTGAAGAG
GAGAATGACACAGCACATATCGTTAAAAGTAAGTTTCTCGAATATTTGGT
AATTTTGGTTCATTTGGAACATCTCTTTCTCTCCTATTTTTCGTTCGGAA
CCTGACCCTGTGTAAGATTTGTATAagaaaggcaactgcatacactttat
tTAAAACTATTGGCTGAAACTCTTAAGCAAGCTTTGAAAATAGAACTACT
NTTAATGAGTTGCTTTGGTAATATGTGTTACAtattgtttttggaagatt
gtttaataaatcataacagatcattttcttatttgaataagaaagagtat
gtttCCAAGGTCCGtattttgaacatgggaaaaatGAAGCAATCAGCCAA
AAATAGCACCCCGAAATCAACAACATTCCAAAACTGTTGTGGTAGAAAGT
CAGtagatttattttcaaagcttgctCAAGAGTTTCAGCCAATAGTTTTA
aataaagtgtatgcagttgcctttctcatacaaatCTTACACAGGGTGAG
GTTCAGAACGAAAAATAGGAGAGATAGAGANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGACACTCACCTGAA
AAAGcctttaatttgtaaaaatgctGCTCCCACGTGATGAACCTTGTTTG
CGAATGgataaataaacttttaaaaactatgGGGACTTTTATATCCCAAA
AATGATTAATcctttctatgtttatcaaaaacagtctgtttttctggctt
ttcttcttaattttatttAGGGTGAACGACGTCAATAGGAATNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNCGATAGTTCATAATAAGACGACCAGCTCCTTTG
ATACAAGACGGTTTTAGGCatctcaaaattgacaatttcataatATTGAA
GAGGAGAATGACACAGCACATATCGTTAAAAGTAAGTTTCTCGAATCTTT
GGTAATTTTGGTTCATTTGGAACATCTCTTTCTCTCCTATTTTTCGTTCG
GAACCTGACCCTGAGTAAGATTTGTATAagaaaggcaactgcatacactt
tattTAAAACTATTGGCTGAAACTCTTAAGCAAGCTTTGAAAATAGAACT
GCTGACTTTCTACCACAACAGTTTTGGAATGTTGTTGATTTCGGGGTGct
atttttggctgattgtttcatttttcccatgttcaaaataCGAACCGTGG
AAATATACTCTTTCTTATTCAAATAGGAAAAATGATCTATTATGAtttat
taaacaatcttccaaaaacaataTGTAACACATATTACCAAAGCAACTCA
TTAAACTCTGTGTCATTGAGGCCCTGAAGTTAACAATATACCATATAAAT
CAATTACATCAGTATTTAGCATGCCAATGAAAAGCTTGCAATAttcgagt
tttcatttttgaaagtgaggcctttttctaacttttctagAGACACTCAC
CTGAAAAAGcctttaatttgtaaaaatgctGCTCACACGTGACGAAACTT
GTTTGCGGATGgataaacaaacttttaaaaacaatgGGGACTTTTTTATC
CCAAAAATGATTTATcctttctatgtttatcaaaaacagtctgtttttct
ggcttttcttcttaattttatttAGGGTGAACGACGTCAATAGGAATGAT
CAACATCAAATAGATTTAGCTCAGAAAAGTATACGAACGAATAATGACGA
TAGTTCATAATAAGACGACCAGCTCCTTTGATACAAGAAGGTTTTAGGCa
tctcaaaattgacaatttcatgatatTGAAGAGGAGAATGACACAGCACA
TATCTATTAAAGTAAGTTTCTCGAATCTTTGGTAATTTTGGTTCATTTGG
AACATCTCTATCTCTCCTTTTTTTTCGTTCGGAACCTGACCTTGTTACAG
atttgtatgagaaaggcaactgcatacactttatttaaaactattcgctg
aaactctaaagcaagctttgaaaataaatctaCTGACTTTCTACCACAAC
AGTTTTGGAATGTTGTTGATTTCGGGGTGctatttttggctgattgtttc
atttttcccataTTCAAAATACGAACCGTGGAATTATACTCTTTCttatt
caaataagaaaatgatctgttatgatttattaaacaatcttccGAAAACA
ATACATATCTATTACCAAAGCAACTCAGTATGCTCCGTGTCATTGAGGCC
CTGAAGTTAACAATATACCAGATAAATCAGTTATATCAGTATTTAGCATT
GCAATAAAAAGCTTGCAATAttcgagttttcatttttgaaagtgatgtcT
TTTCTAACTTTTCTAGAGAAACCCACCTGAAAAAgccttttatttgtaaa
aatgcTTCTCCCACGTGATGAACCTTGTTTGCGAATGGATAAATAAACTC
TTAAAAAACTATGGGGATTTTTATTCCAAAAATGATTGATCTGttctatg
tttatcaaaaacAGTCTGCTTTTCTGGCTTttattcttaattttattttc
ttccgAAAACAATATGAAACACATATATTACCAAAGCAACTCTGTGAACT
CCGTGTCATTGAGGCCCTGAAGTTAACAATATACCATATAGATCAACTAC
ATGAAAAGCTTGCAATAttcgagttttcatttttgaaagtgatgtctttt
tctaacttttccaGAGGAACTCAcctaaaaaaacctttaatttgtaaaaa
tggtgCTCCCACATGATGAACCTTGTTTGCGAATGCATAAAGAAACTCTT
AGAAAACTATGGGGATTTTTTTATCCCAAAAATGGTTTATCTGCTCTAAG
TTTATCAAAAACAGTTTGCTTTTCTGgcttttcttcttaattttatttAG
GGTGATAGACGTCAATAGGAATGATCAACATCAAATAGATTTTGCTCAGA
AAAGTAAACGAACGAGGAATGACGATAGTTCATAATAAGACGACCAGCTC
CTTTGATACCAGACGGTTTTAGGCatctcaaaattgacaatttcataatA
TTGAAGAGGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTTTGATACAAGACGGTTTTAGGCat
ctcaaaattgacaatttcataatattgaagaggagaatgacacagcacat
atctataaaagtaAGTTTCTCAAATCTTTGGTAATTTTGGTTCATTTGGA
ACATCTCTATCTCTCCTATTTTTCGTTCGGAACCTGACCCTGTGAAAGat
ttgtatgagaaaggcaactgcatacactttatttaaaactattggctgaa
actctaaagcaagctttgaaaataaaactactGACTTTCTACCACAACAA
TTTTGGAATGTTGTTGATTTCTGGGTGctatttttggctgattgtttcat
tttcccatgttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021440-exon-sc0000386-1491911889:75868..75950 | TCONS_00021440-exon-sc0000386-1491911889:75868..75950 | Clytia hemisphaerica | exon |
| TCONS_00021440-exon-sc0000386-1510915933:75868..75950 | TCONS_00021440-exon-sc0000386-1510915933:75868..75950 | Clytia hemisphaerica | exon |
| TCONS_00021440-exon-sc0000386-1575043694:75868..75950 | TCONS_00021440-exon-sc0000386-1575043694:75868..75950 | Clytia hemisphaerica | exon |
| TCONS_00021440-exon-sc0000386-1491911889:77681..77744 | TCONS_00021440-exon-sc0000386-1491911889:77681..77744 | Clytia hemisphaerica | exon |
| TCONS_00021440-exon-sc0000386-1510915933:77681..77744 | TCONS_00021440-exon-sc0000386-1510915933:77681..77744 | Clytia hemisphaerica | exon |
| TCONS_00021440-exon-sc0000386-1575043694:77681..77744 | TCONS_00021440-exon-sc0000386-1575043694:77681..77744 | Clytia hemisphaerica | exon |
| TCONS_00021440-exon-sc0000386-1491911889:81568..82129 | TCONS_00021440-exon-sc0000386-1491911889:81568..82129 | Clytia hemisphaerica | exon |
| TCONS_00021440-exon-sc0000386-1510915933:81568..82129 | TCONS_00021440-exon-sc0000386-1510915933:81568..82129 | Clytia hemisphaerica | exon |
| TCONS_00021440-exon-sc0000386-1575043694:81568..82129 | TCONS_00021440-exon-sc0000386-1575043694:81568..82129 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000386 | supercontig | sc0000386:75868..82129 + |
Blast
The following BLAST results are available for this feature:
|
