XLOC_012020 (gene) - C. hemisphaerica

Overview
NameXLOC_012020
Unique NameXLOC_012020
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000386:75868..82129+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_012020 ID=XLOC_012020|Name=XLOC_012020|organism=Clytia hemisphaerica|type=gene|length=6262bp|location=Sequence derived from alignment at sc0000386:75868..82129+ (Clytia hemisphaerica)
TTTTGCTCAGAAAAGTATACGAACGAATAATGACGATACTTCATAATAAG
ACGACCAGCTCCTTTGATACAAGACGGTTTTAGGCatctcaaaattgaca
atttcataatattgaagaggagaatgacacagcacatatctataaaagta
AGTTTCTCCAATCTTTGGTAATTTTGGTTCGTTTGGAACATCTCTATCTC
TCCTATTTTTTTGTTCTGAACCTGACCCTGTGAAAGatttgtatgagaaa
ggcaactgcatacactttattTAAAACTATTGGCTGAAACTCTTAAGCAA
GCTTTGAAAATAGAACTGCTGACTTTCTACCACAACAGTTTTGGAATGTT
GTTGATTTCGGGGTGctatttttggctgattgttTCATTTTNTTGGAATG
TTGTTGATTTCGGGGTGctatttttggctgattgtttcattttcccatgt
tcaaaatacgaaccgtggaaacatactctttcttattcaaataggaaaaa
tgatctgttatgatttattaaacaatcttccaaataCAATATGTAACACT
TATTACCAAAGCAACTCATTAAACTCTGTGTCATTGAGGCCCTGAAGTTA
ACAATATACCATATAAATCAATTACATCAGTCTTTAGCATTCCAATGAAA
AGCTTGCAATAttcgagttttcatttttgaaagtgatgtctttttttaac
ttttctagAGACACTCACCTGAAAAAGcctttaatttgtaaaaatgctGC
TCCCACGTGATGAACCTTGTTTGCGAATGGATAAATATACTTTTAAAAAC
TATGGGGACTTTTTTATCCCAAAATTGATTTATCTGATATATGTTTATCA
TAATCAGTCTGCTTTTCTGgcttttcttcttaattttatttAGGGTGAAC
GACGTCAATAGGAATGATCAACATCAAATAGATTTTTCTCAGAAAAGAAT
ACGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATATCTATAAAAGT
AAGTTTCTCGAATCTTTGGTAATTTTGGTTCATTTGGAACATCTCTATCT
CTCCTATTTTTCGTTCGGGACCTGACCCTGTGTAAAATTTGTATAAGAAA
AgcaactgcatacactttattTAAAACTATTGGCTGAAGCTCTTAAGCAA
GCTTTGAAAATAGAACTACTGACTTTCTACCACAACAGTTTTGGAATGTC
GTTGATTTCGGGGTGctatttttggctgattgtttcatttttcgcATGTT
CAAAATACGAACCTTGGaaacatactctttcttattcaaataagaaaaat
gatctgttatgatttattaaacaatcttccaaaaacaataTGTAACACAT
ATTACCAAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCTCCTTTGATAC
AAGACGGTTTTAGGCatctcaaaattgacaatttcataatattgaagagg
agaatgacacagcacatatctataaaagtaAGTTTCCCGAATCTTTGGTA
ATTTTGGTTCATTTGGAACATCTCTATCTCTCCTATTTTTCGTTCTGAAC
CTGACCATGTGAAAGatttgtatgagaaaggcaactgccNGAGCTAAATC
TATTTGATGTTGATCATTCCTATTGACGTCGTTCACCCTaaataaaatta
agaagaaaagcCAGAAAAACAGACTGTTTTTGATAAACTTAGAAAGGATA
AATCATTTTTGGGATAAAAAAGTCCCcatagtttttaaaagtttatttat
cCATTCGANGAAAACTATGGGGAGTTTTTTATcctttctatgtttatcaa
aaacagtctgtttttctggcttttcttcttaattttatttAGGGTGAACG
AGGTCAATAGGAATGTTCAACATCAAATAGATTTTGCTCAGAAAAGTATA
CGAACGAATAATGACGATAGTTCATAATAAGACGACCAGCTCCTTTGATA
CAAGACAGTTTTAGGCatctcaaaattgacaatttcataatATTGAAGAG
GAGAATGACACAGCACATATCGTTAAAAGTAAGTTTCTCGAATATTTGGT
AATTTTGGTTCATTTGGAACATCTCTTTCTCTCCTATTTTTCGTTCGGAA
CCTGACCCTGTGTAAGATTTGTATAagaaaggcaactgcatacactttat
tTAAAACTATTGGCTGAAACTCTTAAGCAAGCTTTGAAAATAGAACTACT
NTTAATGAGTTGCTTTGGTAATATGTGTTACAtattgtttttggaagatt
gtttaataaatcataacagatcattttcttatttgaataagaaagagtat
gtttCCAAGGTCCGtattttgaacatgggaaaaatGAAGCAATCAGCCAA
AAATAGCACCCCGAAATCAACAACATTCCAAAACTGTTGTGGTAGAAAGT
CAGtagatttattttcaaagcttgctCAAGAGTTTCAGCCAATAGTTTTA
aataaagtgtatgcagttgcctttctcatacaaatCTTACACAGGGTGAG
GTTCAGAACGAAAAATAGGAGAGATAGAGANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGACACTCACCTGAA
AAAGcctttaatttgtaaaaatgctGCTCCCACGTGATGAACCTTGTTTG
CGAATGgataaataaacttttaaaaactatgGGGACTTTTATATCCCAAA
AATGATTAATcctttctatgtttatcaaaaacagtctgtttttctggctt
ttcttcttaattttatttAGGGTGAACGACGTCAATAGGAATNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNCGATAGTTCATAATAAGACGACCAGCTCCTTTG
ATACAAGACGGTTTTAGGCatctcaaaattgacaatttcataatATTGAA
GAGGAGAATGACACAGCACATATCGTTAAAAGTAAGTTTCTCGAATCTTT
GGTAATTTTGGTTCATTTGGAACATCTCTTTCTCTCCTATTTTTCGTTCG
GAACCTGACCCTGAGTAAGATTTGTATAagaaaggcaactgcatacactt
tattTAAAACTATTGGCTGAAACTCTTAAGCAAGCTTTGAAAATAGAACT
GCTGACTTTCTACCACAACAGTTTTGGAATGTTGTTGATTTCGGGGTGct
atttttggctgattgtttcatttttcccatgttcaaaataCGAACCGTGG
AAATATACTCTTTCTTATTCAAATAGGAAAAATGATCTATTATGAtttat
taaacaatcttccaaaaacaataTGTAACACATATTACCAAAGCAACTCA
TTAAACTCTGTGTCATTGAGGCCCTGAAGTTAACAATATACCATATAAAT
CAATTACATCAGTATTTAGCATGCCAATGAAAAGCTTGCAATAttcgagt
tttcatttttgaaagtgaggcctttttctaacttttctagAGACACTCAC
CTGAAAAAGcctttaatttgtaaaaatgctGCTCACACGTGACGAAACTT
GTTTGCGGATGgataaacaaacttttaaaaacaatgGGGACTTTTTTATC
CCAAAAATGATTTATcctttctatgtttatcaaaaacagtctgtttttct
ggcttttcttcttaattttatttAGGGTGAACGACGTCAATAGGAATGAT
CAACATCAAATAGATTTAGCTCAGAAAAGTATACGAACGAATAATGACGA
TAGTTCATAATAAGACGACCAGCTCCTTTGATACAAGAAGGTTTTAGGCa
tctcaaaattgacaatttcatgatatTGAAGAGGAGAATGACACAGCACA
TATCTATTAAAGTAAGTTTCTCGAATCTTTGGTAATTTTGGTTCATTTGG
AACATCTCTATCTCTCCTTTTTTTTCGTTCGGAACCTGACCTTGTTACAG
atttgtatgagaaaggcaactgcatacactttatttaaaactattcgctg
aaactctaaagcaagctttgaaaataaatctaCTGACTTTCTACCACAAC
AGTTTTGGAATGTTGTTGATTTCGGGGTGctatttttggctgattgtttc
atttttcccataTTCAAAATACGAACCGTGGAATTATACTCTTTCttatt
caaataagaaaatgatctgttatgatttattaaacaatcttccGAAAACA
ATACATATCTATTACCAAAGCAACTCAGTATGCTCCGTGTCATTGAGGCC
CTGAAGTTAACAATATACCAGATAAATCAGTTATATCAGTATTTAGCATT
GCAATAAAAAGCTTGCAATAttcgagttttcatttttgaaagtgatgtcT
TTTCTAACTTTTCTAGAGAAACCCACCTGAAAAAgccttttatttgtaaa
aatgcTTCTCCCACGTGATGAACCTTGTTTGCGAATGGATAAATAAACTC
TTAAAAAACTATGGGGATTTTTATTCCAAAAATGATTGATCTGttctatg
tttatcaaaaacAGTCTGCTTTTCTGGCTTttattcttaattttattttc
ttccgAAAACAATATGAAACACATATATTACCAAAGCAACTCTGTGAACT
CCGTGTCATTGAGGCCCTGAAGTTAACAATATACCATATAGATCAACTAC
ATGAAAAGCTTGCAATAttcgagttttcatttttgaaagtgatgtctttt
tctaacttttccaGAGGAACTCAcctaaaaaaacctttaatttgtaaaaa
tggtgCTCCCACATGATGAACCTTGTTTGCGAATGCATAAAGAAACTCTT
AGAAAACTATGGGGATTTTTTTATCCCAAAAATGGTTTATCTGCTCTAAG
TTTATCAAAAACAGTTTGCTTTTCTGgcttttcttcttaattttatttAG
GGTGATAGACGTCAATAGGAATGATCAACATCAAATAGATTTTGCTCAGA
AAAGTAAACGAACGAGGAATGACGATAGTTCATAATAAGACGACCAGCTC
CTTTGATACCAGACGGTTTTAGGCatctcaaaattgacaatttcataatA
TTGAAGAGGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTTTGATACAAGACGGTTTTAGGCat
ctcaaaattgacaatttcataatattgaagaggagaatgacacagcacat
atctataaaagtaAGTTTCTCAAATCTTTGGTAATTTTGGTTCATTTGGA
ACATCTCTATCTCTCCTATTTTTCGTTCGGAACCTGACCCTGTGAAAGat
ttgtatgagaaaggcaactgcatacactttatttaaaactattggctgaa
actctaaagcaagctttgaaaataaaactactGACTTTCTACCACAACAA
TTTTGGAATGTTGTTGATTTCTGGGTGctatttttggctgattgtttcat
tttcccatgttc
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00021440TCONS_00021440Clytia hemisphaericatranscript
TCONS_00021441TCONS_00021441Clytia hemisphaericatranscript
TCONS_00021442TCONS_00021442Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000386supercontigsc0000386:75868..82129 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.73	1.78	1.92	3.9	0.1	0.36	0.52	0.26	0.54	0	0.68	1.53	1.65	1.63	1.1	1.31	0.34	0.83	1.76	0.43	0.58	0.62	0	1.03	0.86	2.57	0.7	0.86	1.35	1.05