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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021441 ID=TCONS_00021441|Name=TCONS_00021441|organism=Clytia hemisphaerica|type=transcript|length=384bp
TATACGAACGAATAATGACGATACTTCATAATAAGACGACCAGCTCCTTT
GATACAAGACGGTTTTAGGCatctcaaaattgacaatttcataatattga
agaggagaatgacacagcacATATCTATAAAAGTAAGTTTCTCGAATCTT
TGGTAATTTTGGTTCATTTGGAACATCTCTATCTCTCCTATTTTTCGTTC
GGAACCTGACCCTGTGAAAGatttgtatgagaaaggcaactgcatacact
ttatttaaaactattggctgaaactctaaagcaagctttgaaaataaaac
tactGACTTTCTACCACAACAATTTTGGAATGTTGTTGATTTCTGGGTGc
tatttttggctgattgtttcattttcccatgttc Run BLAST on NCBI transcript from alignment at sc0000386:75883..82129+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021441 ID=TCONS_00021441|Name=TCONS_00021441|organism=Clytia hemisphaerica|type=transcript|length=6247bp|location=Sequence derived from alignment at sc0000386:75883..82129+ (Clytia hemisphaerica)
TATACGAACGAATAATGACGATACTTCATAATAAGACGACCAGCTCCTTT
GATACAAGACGGTTTTAGGCatctcaaaattgacaatttcataatattga
agaggagaatgacacagcacatatctataaaagtaAGTTTCTCCAATCTT
TGGTAATTTTGGTTCGTTTGGAACATCTCTATCTCTCCTATTTTTTTGTT
CTGAACCTGACCCTGTGAAAGatttgtatgagaaaggcaactgcatacac
tttattTAAAACTATTGGCTGAAACTCTTAAGCAAGCTTTGAAAATAGAA
CTGCTGACTTTCTACCACAACAGTTTTGGAATGTTGTTGATTTCGGGGTG
ctatttttggctgattgttTCATTTTNTTGGAATGTTGTTGATTTCGGGG
TGctatttttggctgattgtttcattttcccatgttcaaaatacgaaccg
tggaaacatactctttcttattcaaataggaaaaatgatctgttatgatt
tattaaacaatcttccaaataCAATATGTAACACTTATTACCAAAGCAAC
TCATTAAACTCTGTGTCATTGAGGCCCTGAAGTTAACAATATACCATATA
AATCAATTACATCAGTCTTTAGCATTCCAATGAAAAGCTTGCAATAttcg
agttttcatttttgaaagtgatgtctttttttaacttttctagAGACACT
CACCTGAAAAAGcctttaatttgtaaaaatgctGCTCCCACGTGATGAAC
CTTGTTTGCGAATGGATAAATATACTTTTAAAAACTATGGGGACTTTTTT
ATCCCAAAATTGATTTATCTGATATATGTTTATCATAATCAGTCTGCTTT
TCTGgcttttcttcttaattttatttAGGGTGAACGACGTCAATAGGAAT
GATCAACATCAAATAGATTTTTCTCAGAAAAGAATACGGANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNACATATCTATAAAAGTAAGTTTCTCGAATCT
TTGGTAATTTTGGTTCATTTGGAACATCTCTATCTCTCCTATTTTTCGTT
CGGGACCTGACCCTGTGTAAAATTTGTATAAGAAAAgcaactgcatacac
tttattTAAAACTATTGGCTGAAGCTCTTAAGCAAGCTTTGAAAATAGAA
CTACTGACTTTCTACCACAACAGTTTTGGAATGTCGTTGATTTCGGGGTG
ctatttttggctgattgtttcatttttcgcATGTTCAAAATACGAACCTT
GGaaacatactctttcttattcaaataagaaaaatgatctgttatgattt
attaaacaatcttccaaaaacaataTGTAACACATATTACCAAAGCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCCAGCTCCTTTGATACAAGACGGTTTTAGGC
atctcaaaattgacaatttcataatattgaagaggagaatgacacagcac
atatctataaaagtaAGTTTCCCGAATCTTTGGTAATTTTGGTTCATTTG
GAACATCTCTATCTCTCCTATTTTTCGTTCTGAACCTGACCATGTGAAAG
atttgtatgagaaaggcaactgccNGAGCTAAATCTATTTGATGTTGATC
ATTCCTATTGACGTCGTTCACCCTaaataaaattaagaagaaaagcCAGA
AAAACAGACTGTTTTTGATAAACTTAGAAAGGATAAATCATTTTTGGGAT
AAAAAAGTCCCcatagtttttaaaagtttatttatcCATTCGANGAAAAC
TATGGGGAGTTTTTTATcctttctatgtttatcaaaaacagtctgttttt
ctggcttttcttcttaattttatttAGGGTGAACGAGGTCAATAGGAATG
TTCAACATCAAATAGATTTTGCTCAGAAAAGTATACGAACGAATAATGAC
GATAGTTCATAATAAGACGACCAGCTCCTTTGATACAAGACAGTTTTAGG
CatctcaaaattgacaatttcataatATTGAAGAGGAGAATGACACAGCA
CATATCGTTAAAAGTAAGTTTCTCGAATATTTGGTAATTTTGGTTCATTT
GGAACATCTCTTTCTCTCCTATTTTTCGTTCGGAACCTGACCCTGTGTAA
GATTTGTATAagaaaggcaactgcatacactttattTAAAACTATTGGCT
GAAACTCTTAAGCAAGCTTTGAAAATAGAACTACTNTTAATGAGTTGCTT
TGGTAATATGTGTTACAtattgtttttggaagattgtttaataaatcata
acagatcattttcttatttgaataagaaagagtatgtttCCAAGGTCCGt
attttgaacatgggaaaaatGAAGCAATCAGCCAAAAATAGCACCCCGAA
ATCAACAACATTCCAAAACTGTTGTGGTAGAAAGTCAGtagatttatttt
caaagcttgctCAAGAGTTTCAGCCAATAGTTTTAaataaagtgtatgca
gttgcctttctcatacaaatCTTACACAGGGTGAGGTTCAGAACGAAAAA
TAGGAGAGATAGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNAGAGACACTCACCTGAAAAAGcctttaatttg
taaaaatgctGCTCCCACGTGATGAACCTTGTTTGCGAATGgataaataa
acttttaaaaactatgGGGACTTTTATATCCCAAAAATGATTAATccttt
ctatgtttatcaaaaacagtctgtttttctggcttttcttcttaatttta
tttAGGGTGAACGACGTCAATAGGAATNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCGATAGTTCATAATAAGACGACCAGCTCCTTTGATACAAGACGGTTTT
AGGCatctcaaaattgacaatttcataatATTGAAGAGGAGAATGACACA
GCACATATCGTTAAAAGTAAGTTTCTCGAATCTTTGGTAATTTTGGTTCA
TTTGGAACATCTCTTTCTCTCCTATTTTTCGTTCGGAACCTGACCCTGAG
TAAGATTTGTATAagaaaggcaactgcatacactttattTAAAACTATTG
GCTGAAACTCTTAAGCAAGCTTTGAAAATAGAACTGCTGACTTTCTACCA
CAACAGTTTTGGAATGTTGTTGATTTCGGGGTGctatttttggctgattg
tttcatttttcccatgttcaaaataCGAACCGTGGAAATATACTCTTTCT
TATTCAAATAGGAAAAATGATCTATTATGAtttattaaacaatcttccaa
aaacaataTGTAACACATATTACCAAAGCAACTCATTAAACTCTGTGTCA
TTGAGGCCCTGAAGTTAACAATATACCATATAAATCAATTACATCAGTAT
TTAGCATGCCAATGAAAAGCTTGCAATAttcgagttttcatttttgaaag
tgaggcctttttctaacttttctagAGACACTCACCTGAAAAAGccttta
atttgtaaaaatgctGCTCACACGTGACGAAACTTGTTTGCGGATGgata
aacaaacttttaaaaacaatgGGGACTTTTTTATCCCAAAAATGATTTAT
cctttctatgtttatcaaaaacagtctgtttttctggcttttcttcttaa
ttttatttAGGGTGAACGACGTCAATAGGAATGATCAACATCAAATAGAT
TTAGCTCAGAAAAGTATACGAACGAATAATGACGATAGTTCATAATAAGA
CGACCAGCTCCTTTGATACAAGAAGGTTTTAGGCatctcaaaattgacaa
tttcatgatatTGAAGAGGAGAATGACACAGCACATATCTATTAAAGTAA
GTTTCTCGAATCTTTGGTAATTTTGGTTCATTTGGAACATCTCTATCTCT
CCTTTTTTTTCGTTCGGAACCTGACCTTGTTACAGatttgtatgagaaag
gcaactgcatacactttatttaaaactattcgctgaaactctaaagcaag
ctttgaaaataaatctaCTGACTTTCTACCACAACAGTTTTGGAATGTTG
TTGATTTCGGGGTGctatttttggctgattgtttcatttttcccataTTC
AAAATACGAACCGTGGAATTATACTCTTTCttattcaaataagaaaatga
tctgttatgatttattaaacaatcttccGAAAACAATACATATCTATTAC
CAAAGCAACTCAGTATGCTCCGTGTCATTGAGGCCCTGAAGTTAACAATA
TACCAGATAAATCAGTTATATCAGTATTTAGCATTGCAATAAAAAGCTTG
CAATAttcgagttttcatttttgaaagtgatgtcTTTTCTAACTTTTCTA
GAGAAACCCACCTGAAAAAgccttttatttgtaaaaatgcTTCTCCCACG
TGATGAACCTTGTTTGCGAATGGATAAATAAACTCTTAAAAAACTATGGG
GATTTTTATTCCAAAAATGATTGATCTGttctatgtttatcaaaaacAGT
CTGCTTTTCTGGCTTttattcttaattttattttcttccgAAAACAATAT
GAAACACATATATTACCAAAGCAACTCTGTGAACTCCGTGTCATTGAGGC
CCTGAAGTTAACAATATACCATATAGATCAACTACATGAAAAGCTTGCAA
TAttcgagttttcatttttgaaagtgatgtctttttctaacttttccaGA
GGAACTCAcctaaaaaaacctttaatttgtaaaaatggtgCTCCCACATG
ATGAACCTTGTTTGCGAATGCATAAAGAAACTCTTAGAAAACTATGGGGA
TTTTTTTATCCCAAAAATGGTTTATCTGCTCTAAGTTTATCAAAAACAGT
TTGCTTTTCTGgcttttcttcttaattttatttAGGGTGATAGACGTCAA
TAGGAATGATCAACATCAAATAGATTTTGCTCAGAAAAGTAAACGAACGA
GGAATGACGATAGTTCATAATAAGACGACCAGCTCCTTTGATACCAGACG
GTTTTAGGCatctcaaaattgacaatttcataatATTGAAGAGGAGANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTTTGATACAAGACGGTTTTAGGCatctcaaaattgacaat
ttcataatattgaagaggagaatgacacagcacatatctataaaagtaAG
TTTCTCAAATCTTTGGTAATTTTGGTTCATTTGGAACATCTCTATCTCTC
CTATTTTTCGTTCGGAACCTGACCCTGTGAAAGatttgtatgagaaaggc
aactgcatacactttatttaaaactattggctgaaactctaaagcaagct
ttgaaaataaaactactGACTTTCTACCACAACAATTTTGGAATGTTGTT
GATTTCTGGGTGctatttttggctgattgtttcattttcccatgttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021441-exon-sc0000386-1491911889:75883..76002 | TCONS_00021441-exon-sc0000386-1491911889:75883..76002 | Clytia hemisphaerica | exon |
| TCONS_00021441-exon-sc0000386-1510915933:75883..76002 | TCONS_00021441-exon-sc0000386-1510915933:75883..76002 | Clytia hemisphaerica | exon |
| TCONS_00021441-exon-sc0000386-1575043694:75883..76002 | TCONS_00021441-exon-sc0000386-1575043694:75883..76002 | Clytia hemisphaerica | exon |
| TCONS_00021441-exon-sc0000386-1491911889:77054..77107 | TCONS_00021441-exon-sc0000386-1491911889:77054..77107 | Clytia hemisphaerica | exon |
| TCONS_00021441-exon-sc0000386-1510915933:77054..77107 | TCONS_00021441-exon-sc0000386-1510915933:77054..77107 | Clytia hemisphaerica | exon |
| TCONS_00021441-exon-sc0000386-1575043694:77054..77107 | TCONS_00021441-exon-sc0000386-1575043694:77054..77107 | Clytia hemisphaerica | exon |
| TCONS_00021441-exon-sc0000386-1491911889:81920..82129 | TCONS_00021441-exon-sc0000386-1491911889:81920..82129 | Clytia hemisphaerica | exon |
| TCONS_00021441-exon-sc0000386-1510915933:81920..82129 | TCONS_00021441-exon-sc0000386-1510915933:81920..82129 | Clytia hemisphaerica | exon |
| TCONS_00021441-exon-sc0000386-1575043694:81920..82129 | TCONS_00021441-exon-sc0000386-1575043694:81920..82129 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000386 | supercontig | sc0000386:75883..82129 + |
Blast
The following BLAST results are available for this feature:
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