TCONS_00021093 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021093
Unique NameTCONS_00021093
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length885

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021093 ID=TCONS_00021093|Name=TCONS_00021093|organism=Clytia hemisphaerica|type=transcript|length=885bp
CCAGAAGTTCTCTCTCTTACTAAACAGATGGATGAGGATAAAACTAGTAT
AAAAATACCTGGTGAACGTCTTGGTAGCAAATCAGAGTTTGATGCAGGCG
AGGGAACGTACATACGAAATGGATTCATTTATTCCAAATTATGTGGTAAA
AAGGAAATCAACACCAAAGCAGGCGCTGATAAACCAACAATATGTGTCGT
TAGAAGTGGTCAGAACATTGTACCTGAAGTCAATACAGTGGCAATGTGCA
AAGTTATCAATAATAATCCACGCTTTAGTAAAGTGAATATTTTATCTGTT
GGAGGGACATCTTTGAAAGGCACTTTTAAAGGTATAATACGTAAAGAAGA
TGTAAGAGCTACACAAAAAGACACTGTGAAAATGTATGAATCCTTCCGCC
CTGGAGACATTGTTTTAGCTAGAATCCTATCTCTTGGTGATTCTCAATCT
TATTTTCTGTCAACAGCAGAGAATGAGCTTGGTGTTATTTATGCTTGTAG
TGAATCTGGTTATTCCATGATACCTATTAGTTGGTGTGAGATGCAATGCT
CTCATTCTGGTAAGAAAGAACATCGTAAAGTTGCCAAAGTTAAAATCAGA
CAAGTTTGAGGTTTTTTGGTAGAGTACCTAGATTACAttatatttttagc
tttttatatctttttatcACATGGTTATTATgatatcgaaaaaaaaaaag
tttaattctTAGTTTTCTTTTACGGTTTTACTGTCTTGAAAATATGGTTT
CTTATTAGTATAAACAGCTACTTATTTTGATCATGTGACTTTGAACTTCA
AACTTAATGAATTAGGGTAAGGTAAGGTTCTCGGAATGGAGCTTTTTGAA
TTCATTCTTCTTGGAATTGAGCTTTTTGAATTGAG
Run BLAST on NCBI

protein sequence of TCONS_00021093-protein

>TCONS_00021093-protein ID=TCONS_00021093-protein|Name=TCONS_00021093-protein|organism=Clytia hemisphaerica|type=polypeptide|length=202bp
PEVLSLTKQMDEDKTSIKIPGERLGSKSEFDAGEGTYIRNGFIYSKLCGK
KEINTKAGADKPTICVVRSGQNIVPEVNTVAMCKVINNNPRFSKVNILSV
GGTSLKGTFKGIIRKEDVRATQKDTVKMYESFRPGDIVLARILSLGDSQS
YFLSTAENELGVIYACSESGYSMIPISWCEMQCSHSGKKEHRKVAKVKIR
QV
Run BLAST on NCBI

transcript from alignment at sc0000378:124709..135555+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021093 ID=TCONS_00021093|Name=TCONS_00021093|organism=Clytia hemisphaerica|type=transcript|length=10847bp|location=Sequence derived from alignment at sc0000378:124709..135555+ (Clytia hemisphaerica)
CCAGAAGTTCTCTCTCTTACTAAACAGGTATATATAAATCTATTGTCTAT
ATTTGGTTCCAACAAGATTTCACTTACCAGGAATATTATGTTAACCCCCT
CtaatcagtgtagctggaacctcgatatNCctcaatattccaggattaga
aaacgctatacctgttatcttttttctttaaacaaagaatcaacaagcca
tcaacatctgACATCCataaattccacacatttcctcagaaacttttaaa
atcatctgccattatgactttcttgaagctgttccgaaatgaaccaatcg
ggctatgtatcggaattcctatctatggtagggtggacaggccaaaattt
tcccctcaatttttagaaaccaaactaattttatttgaaagtccttacct
ttgtgagaaaaacgAGGGGTCATTTATTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNtattcccaaagttattccattttca
aaacacaaaaaaatcaccttttcaaagaatcgcctccttacaccacgcca
gcaagaaataattttcggaagcaccaaattCGCGCCAAAAAtagcggatg
aaatctagtcttccgtgtggcggggtgtggggagttttgctggtgcggtc
tgaaaatcagCCCGATGACtgaaactttagcttatcgctaatgagctgga
aatgattgctaaaaacaaatttcaccactagaaagctgaaaccctcagct
ttcagatggtgtatgctgCTTAAGAGCCACTGTCTGTAAGAATCAGACAG
GGTGAGGaagtgaattttttaaaaatggctcattttgatatattttgttc
tAACTAATGGACTGAtcatcctgtgaaaattttagggtcTAACTCAAagc
ggttcagattttatggccggttgaaatttcaaatttgagcGGTCTCCGCt
aacaaaaaatctcaaatttggCTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgaaaaaatccgcaatcttg
ttaaaaaatcgcaatttcttcttatttttcaaaatccagacggcctgtag
attttcaaataaagcactttgtgatagATTTGTAgcctaatagacctttt
ttcaaagaggacgtcctgttgaataattatatagtccagccataaaaaca
atgatagagccatgcataattactgtatcatgcatattgtaataattatg
cgtggttttatcattgtttttctgctggactacataattattcaacaggg
tgacctctttgaaaaaaggtctatcttaccctgggtttactaagaAAACc
acgattgaaaagatgaaccagcttaatagcgacagccatttgtttcaatc
tgggtcgagaattttccggtgccgtggtcagcgctaaatcacgttttcac
cttgacatcaaaaacatgaatatctttggaaagaaaatagatacctggat
gcagttttttttacttgtttccctgataattcctgattgatttaaaaaaa
gaatgaacagatttggatgatttaaaggtaagtactaatgcattgaagct
catttttgtaaattcttcctcgttccgcgcaaaaaatcccgacgagtgcg
caccctacctatgggagttcttttcagaaatttgtaaaatagctaagtca
gcaaaaaaacttttcccgggggtttgaggaaaaacagaactgctatcatt
tgttttttatttaaccagatatttaaatttgggctcaaaaatacttaaaa
aaataagttaataatattcaatatactatttgtgtctcttagaaaataaa
cacttacagaacgacatcgtttatcattggaatacccccgtatttagacc
attctattgtgggcgcaAAATGGGgaggaaactaagtagcaccctcagtg
taagattgccgcctcatctttattcgcccgcgccagaatgcgagctaatc
atttttttctcgtgCGCTCGAGGGGaaaagaaagtgattgatattctttg
aaggaaaaacgtcagaaacaaacccaaagaccaaaagatgtattttgttg
ttgagaatcgatcatgtgaagatgaaaaaattTTTGCtttgcgttttttt
cggaacgctgaaaaactctaatttcgatcttcctttaaggtgaagaggtt
gcgagatttgggttagcgaggcaaaaatcgctaaaaagctggtaaaatcg
taatcctcaaaaatcgaagttccagcctcactgctAATGTCTGAATTTTG
ACAGTCTAAATAATTTCCAGCGCAGCCAGCCCCCACCCACAGGTGTTACC
GCAAGTGTTTCAAcaggtattccaacgaagccatattttggtttgtacag
aaatttcgcccgctcaaatctaaacaacaaaatggtcaatctcactaaag
caaaacattgcggccacgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNacggcatttc
cctggataaaaattctggtcacgtgaccatccgtgattttagaccaatga
aaacgcttcatttccccggattaaagttgtgtctacactaacgcGCGAAA
ATTAGTGCAatagtgttacgcgtaagccaaatcttgtattacgaacaacc
tctaaatgaAATCTTGTGGTACTGGTACACTGACTTGGTACCCCCCCTGA
CAAACTATATAAGGACATAAGGCttcaatattaaaaacaagttaagaaca
tttcaaggcttcgcGGACTTAAAAACACCTGGTTTCTTAggtaaatggac
aaaaatactcggaaaacagtgaaaataagaacgtcagtcaggcacatcct
ggcaaatgaacggggtgagcatttgcatggggtattcgtcacccagtgta
aatgagataggacgtctcaggctaaaagcgtcaaaatgaataaaaatgaa
cttcaaactgaaaatgggaaaaaaggaagaaaactgggaactttattttt
ttgttaaaagtttcttcaatcttcgaagaaaaAATTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcatctatgcagttcttcaa
aatgaagcaaaatatttcaaacccggttcaattgcgtggggtattcagca
ctattacatcacttttgttttcgaccccttgcTTTTGCCACCAatcacaa
gtgaaaaataccccgttcatttgccaggatgtgcctgactgaacgtgtta
gaacatttttagagtttttaaaactaaaaaagttaagaatgtcagatggc
tgaattttttttttgtgtcggaaaaacttttttaaactttcagcgatgat
tgaccaaactgttacaaagaaaattatccagcgcattttttatcttataa
ttaatgatattcgaTGAAACATGCTTCGTTGTGTGCTGCGGttgagtgca
tgacgtaactcgcgcggcaactaactcgccttctgttggatcATCATATt
aggcgttttggcgttaccaccctcgaagcagcgggcgcctttgtctttcc
gcaactctttccaccattttagatggccttaacaatagatccaaaagggc
gccataatcttggaagataatttgttttgggaagtagtaatgtttttggt
tgtttttgatggaaaatggtaagaaacttaagtttataagtgtcatttag
tttttgctggcttatagaatggcaggatcctggatggtttccctaactgc
ctttaggatgggaaataagtggcttcatttctcaTCCAGGAGTTTGCGTG
TCTAGCCCCTTTTGGCTTGGGCTtactagcctggagatccatgctatgat
ttcttattttatacgctgagtttgaatttcccagatcctaaaaaaaagac
aattgaaaacacagccaatcaaattctatTATTCTTTCACttgtcacact
ttcttagaaaaattgcAAGCTCCGAaatttgtcttttattttagtaagtg
aggacagagCTAAATTCAAGGgcttaacctgataacagctgttcataatt
ttattACGCGCACTGTAAACCTCTGAACTtgcttgaaaattaaacatctg
aAGAAAATAGTCCTCCCATGGAAAATTCTActacaagaatcttgttgtgt
gccggaaagtcaaaaactaaattttcatgATGTGGTGccctatagacctt
ttcgcctttcctcCGCGATCTTGAATTTTATGCACAAATAGAGAAGCGAA
AAAGCTGTGGTTGGATTTATATgcaatatgcaaaacatatgcaaacaGTT
TACACAAGattaaaaaggcaaaaaagcatcttataaagaaatattttata
tataatcATTAGAAATAagagatggaatttcttaatccaaaaaggaatat
tttcagagccttttagaaatttggcAATCTGAAAATCAACCCGATGACTG
ATAAATTTTGGCTTATCGCTAAATGAGCTaaaaatgatagctaaaaacaa
atttagaccgaccctaaaagaaaaaaagtttccgTGGACcgggtgaaatt
ttttttcgtcgtcacgCGGccccatttttttttcataagaaccaaatAGA
TAACAGATGAAACTTTCTTCTTAAACACCTTTACTCATGACTCATTCAAA
CTGTTACATTGTTCCTATAAATAAcactcttcaaaaagtttgtttattta
gcATGCTTTCTGGAcgttaaagatcaaataaatagtgttatgcatattaa
atcaatttattagaatgaaaagttagttgattcttagaaaaaagaatCAC
AAAGTACAGCTTTTTGTAATTAATAGCAACACATTTCTTTcagtgaaaga
aagaaaaaatattaagacAGAATGTGGGGCAACTAACACTAACAGCCAga
gagatgatttttttcttcctaattttttttattagaaatcatgaaaagga
cgaaaaaaaaattttcccgccCGCCCGCATgacttttttttcgtcacccg
gtgggTCGGAAAcgaaaaaattttcagggtCGACCTTACCACTACTGTAG
AAAGCTGAAAACCTCAGCTTTCAAATGGTGTATGTTGCTTACATGAAAAA
ATCTGCAATCTTATCGAAAAATCTGCAATCTTGTCGAAAAAtcgcaattt
ttatttttcaaaattccagaccATAAAACAGCATGTGATAGATGTAGCCT
TTAATCTTACCCtaggtttactaaaaaaaccacAATTGagaagatgaacc
agctcattAACCAGCCATTTGTTTCTATGTGGGTCAAGAATTTTCCTGTG
AATTCaccttgacgtcaaaaaaacatCAATATCTTTGGGTAAAATAAAAG
ATAGTAAGATGCAGTTTTTTTACTTGCACTCTTGTGTCCCTGATAATTTc
tgattgatttaaaagtaataaaaacaattacataattaacataatggcaa
ttatgcatgtaagttttatattaatacctTATTTTTGCATaagttttgca
tatttttcaatgaaatctcACCACTGCATTTTGgaaaccataatttttgc
atacaattcaatatggcagatggaaaggcgGGAAGGTCTATAAGAAATAA
TCAAAAAGTAACTAGTAACTAAATCATTTCATTGGCTTTTTATAGAATTA
AGGGTGGAAAAATTAAGGGATGTTTCTTTATGACCAATATGACCAATAAT
TAAGGTAGAATAAATCGATACAAGGTAACCAATTCGCATATTATCCCATA
TGTACCGGGTGTGTCAAAAAAACGCgcctatttttcgatttttgacgtac
aaatttctatcaaacaaagacaaatgaaattttcagggaagatttgaaat
ttaattttttaccctTGCCTTGGTGAAAATTATACATTTCTatgttcatt
taaaatgactttaTGATAATTCCGCTGACTTATGTCAAATTTTCATTGTT
CACGGATTTTCATAGTTAAATTTTTCCATATAAACAAGAAACTAAAGTAC
GCTTCGTTTTTACTCTCTTATTTTGTTTCGCTACtattaaaacaataaaa
tggcatcattttttgatttcataGGTTGAGTTTTGTTCCAAGGTCAATAT
TTGATAGATTCTAGCTAGTTCCAACCAAGCTATTTTTTAACGTCAATTGC
GACgacaaaaaaatactttcaaatcGTCAATGGAGCAGAAATGAACCGAT
GTTATTACCTTTTGTACATCAAAATCCTAAGGTTTTCAGTTCAACTGTTT
TGTAAAATGTTAAAGAAGCAGAACAGAGCTTGTAGAATATAATATGATCG
ATTAAATAATGGAAATGAAACGAATTGgtgaaaatttgttttgctaAGAA
ATGCTTTACATTGACTTGAACACCTTGAGATGTTACGATAACACTGCAAA
CTTTCNAATGAAATCTCACCACTGCATTTTGgaaaccataatttttgcat
acaattcaatatggcagatggaaaggcgGGAAGGTCTATAAGAAATAATC
AAAAAGTAACTAGTAACTAAATCATTTCATTGGCTTTTTATAGAATTAAG
GGTGGAAAAATTAAGGGATATTTCTTTATGACCAATATGACCAATAATTA
AGGTAGAATAAATCGATACAAGGTAACCAATTCGCATATATCCCATTATG
TATTTCATAAAGCAAGAAATTAATCATATGGGAAAGATTGACAAGAagtt
attttatttatatttttaaacacaAAGTTATAATAAAAAGCCTTACTAAA
TCTTATGCATTGCTACAATATCTTACAGTACTTAATCCATTGTTTCAAGG
TTAGGGGATTCTTTTATgttaaggcgaaaataaaaaaatgcagtGTTTTT
GGAAACCGGCCGgctgaaaaacatattttttctgaCCCGGTTGCAGACTA
TTggttcatctatatggttcatcatgtaaagaaaatcaagttgaccgttc
aagctatctaacgtcgtttggttagatattcccgcaTGTAATTCAAGTTT
TGTTCggtagtagttgatacattagtattcagggcttacttcatactgtt
tgtacataaaagttatctttaaagttctatttcaatgatctttaagttat
caaaaatgggaaaataaattttttttccggctgtCTGCATGagttttttc
cttcacccgcgtccggaaacactacatttttttattttcgcctaaccagt
aatttttttcagcatcagctatttttattttttctggcACTTGAGTTCTT
CTCATATTAagttttatatgaaaaaaatccagatTTCATAATCTACACAT
TCTTCCCGATTTCTCTGCAGTTTGCTGACTTGTATTATTCTAGTAAAACC
TCGGAAAAACCCTGCTTTATTTGGGACAATATAGGAGGGTGATGGTATCA
ATTCAATTTATCTTTAATATTTTCTGGATGATATTTCAGATGGATGAGGA
TAAAACTAGTATAAAAATACCTGGTGAACGTCTTGGTAGCAAATCAGAGT
TTGATGCAGGCGAGGGAACGTACATACGAAATGGATTCATTTATTCCAAA
TTATGTGGTAAAAAGGAAATCAACACCAAAGCAGGCGCTGATAAACCAAC
AATATGTGTCGTTAGAAGTGGTCAGAACATTGTACCTGAAGTCAATACAG
TGGCAATGTGCAAAGTTATCAATAATAATCCACGCTTTAGTAAAGTGAAT
ATTTTATCTGTTGGAGGGACATCTTTGAAAGGCACTTTTAAAGGTATAAT
ACGTAAAGAAGATGTAAGAGCTACACAAAAAGACACTGTGAAAATGTATG
AATCCTTCCGCCCTGGAGACATTGTTTTAGCTAGAATCCTATCTCTTGGT
GATTCTCAATCTTATTTTCTGTCAACAGCAGAGAATGAGCTTGGTGTTAT
TTATGCTTGTAGTGAATCTGGTTATTCCATGATACCTATTAGTTGGTGTG
AGATGCAATGCTCTCATTCTGGTAAGAAAGAACATCGTAAAGTTGCCAAA
GTTAAAATCAGACAAGTTTGAGGTTTTTTGGTAGAGTACCTAGATTACAt
tatatttttagctttttatatctttttatcACATGGTTATTATgatatcg
aaaaaaaaaaagtttaattctTAGTTTTCTTTTACGGTTTTACTGTCTTG
AAAATATGGTTTCTTATTAGTATAAACAGCTACTTATTTTGATCATGTGA
CTTTGAACTTCAAACTTAATGAATTAGGGTAAGGTAAGGTTCTCGGAATG
GAGCTTTTTGAATTCATTCTTCTTGGAATTGAGCTTTTTGAATTGAG

Coding sequence (CDS) from alignment at sc0000378:124709..135555+

>TCONS_00021093 ID=TCONS_00021093|Name=TCONS_00021093|organism=Clytia hemisphaerica|type=CDS|length=1218bp|location=Sequence derived from alignment at sc0000378:124709..135555+ (Clytia hemisphaerica)
CCAGAAGTTCTCTCTCTTACTAAACAGATGGATGAGGATAAAACTAGTAT
AAAAATACCTGGTGAACGTCTTGGTAGCAAATCAGAGTTTGATGCAGGCG
AGGGAACGTACATACGAAATGGATTCATTTATTCCAAATTATGTGGTAAA
AAGGAAATCAACACCAAAGCAGGCGCTGATAAACCAACAATATGTGTCGT
TAGAAGTGGTCAGAACATTGTACCTGAAGTCAATACAGTGGCAATGTGCA
AAGTTATCAATAATAATCCACGCTTTAGTAAAGTGAATATTTTATCTGTT
GGAGGGACATCTTTGAAAGGCACTTTTAAAGGTATAATACGTAAAGAAGA
TGTAAGAGCTACACAAAAAGACACTGTGAAAATGTATGAATCCTTCCGCC
CTGGAGACATTGTTTTAGCTAGAATCCTATCTCTTGGTGATTCTCAATCT
TATTTTCTGTCAACAGCAGAGAATGAGCTTGGTGTTATTTATGCTTGTAG
TGAATCTGGTTATTCCATGATACCTATTAGTTGGTGTGAGATGCAATGCT
CTCATTCTGGTAAGAAAGAACATCGTAAAGTTGCCAAAGTTAAAATCAGA
CAAGTTTGACCAGAAGTTCTCTCTCTTACTAAACAGATGGATGAGGATAA
AACTAGTATAAAAATACCTGGTGAACGTCTTGGTAGCAAATCAGAGTTTG
ATGCAGGCGAGGGAACGTACATACGAAATGGATTCATTTATTCCAAATTA
TGTGGTAAAAAGGAAATCAACACCAAAGCAGGCGCTGATAAACCAACAAT
ATGTGTCGTTAGAAGTGGTCAGAACATTGTACCTGAAGTCAATACAGTGG
CAATGTGCAAAGTTATCAATAATAATCCACGCTTTAGTAAAGTGAATATT
TTATCTGTTGGAGGGACATCTTTGAAAGGCACTTTTAAAGGTATAATACG
TAAAGAAGATGTAAGAGCTACACAAAAAGACACTGTGAAAATGTATGAAT
CCTTCCGCCCTGGAGACATTGTTTTAGCTAGAATCCTATCTCTTGGTGAT
TCTCAATCTTATTTTCTGTCAACAGCAGAGAATGAGCTTGGTGTTATTTA
TGCTTGTAGTGAATCTGGTTATTCCATGATACCTATTAGTTGGTGTGAGA
TGCAATGCTCTCATTCTGGTAAGAAAGAACATCGTAAAGTTGCCAAAGTT
AAAATCAGACAAGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011825XLOC_011825Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021093-proteinTCONS_00021093-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021093-exon-sc0000378-1491911889:124709..124735TCONS_00021093-exon-sc0000378-1491911889:124709..124735Clytia hemisphaericaexon
TCONS_00021093-exon-sc0000378-1510915933:124709..124735TCONS_00021093-exon-sc0000378-1510915933:124709..124735Clytia hemisphaericaexon
TCONS_00021093-exon-sc0000378-1575043694:124709..124735TCONS_00021093-exon-sc0000378-1575043694:124709..124735Clytia hemisphaericaexon
TCONS_00021093-exon-sc0000378-1491911889:134698..135555TCONS_00021093-exon-sc0000378-1491911889:134698..135555Clytia hemisphaericaexon
TCONS_00021093-exon-sc0000378-1510915933:134698..135555TCONS_00021093-exon-sc0000378-1510915933:134698..135555Clytia hemisphaericaexon
TCONS_00021093-exon-sc0000378-1575043694:134698..135555TCONS_00021093-exon-sc0000378-1575043694:134698..135555Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000378supercontigsc0000378:124709..135555 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.031	21.6995	17.0543	21.9172	42.1817	34.507	25.9774	25.4567	24.5894	21.2548	18.3441	17.6511	17.9407	17.4354	26.2546	25.0091	27.8149	28.6306	7.64315	8.17314	20.9059	20.7161	89.7204	70.6274	15.8336	19.2103	20.2936	17.1266	46.8919	53.3541
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR025721Exosome_cplx_N_dom
IPR019495EXOSC1
IPR012340NA-bd_OB-fold
Vocabulary: Cellular Component
TermDefinition
GO:0000178exosome (RNase complex)
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0000178 exosome (RNase complex)
molecular_function GO:0003723 RNA binding
Blast
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BLAST of TCONS_00021093 vs. Swiss-Prot (Human)
Match: EXOS1 (Exosome complex component CSL4 OS=Homo sapiens GN=EXOSC1 PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 3.987e-63
Identity = 102/182 (56.04%), Postives = 135/182 (74.18%), Query Frame = 1 
Query:   55 IPGERLGSKSEFDAGEGTYIRNGFIYSKLCGKKEINTKAGADKPTICVVRSGQN-IVPEVNTVAMCKVINNNPRFSKVNILSVGGTSLKGTFKGIIRKEDVRATQKDTVKMYESFRPGDIVLARILSLGDSQS-YFLSTAENELGVIYACSESGYSMIPISWCEMQCSHSGKKEHRKVAKVK 594
            IPGERL +  E   G GTY R+G+I+S L G    +++ GA  P + VVR  ++ ++P+V  +  CKV + N RF+KV+IL VG   LK +F+G IRKEDVRAT+KD V++Y+SFRPGDIVLA+++SLGD+QS Y L+TAENELGV+ A SESG  M+PISWCEMQC  +  KE RKVA+V+
Sbjct:    9 IPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLMKSSENGA-LPVVSVVRETESQLLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGIQMVPISWCEMQCPKTHTKEFRKVARVQ 189
The following BLAST results are available for this feature:
BLAST of TCONS_00021093 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EXOS13.987e-6356.04Exosome complex component CSL4 OS=Homo sapiens GN=... [more]
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