TCONS_00021093-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00021093-protein
Unique NameTCONS_00021093-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length202

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00021093-protein ID=TCONS_00021093-protein|Name=TCONS_00021093-protein|organism=Clytia hemisphaerica|type=polypeptide|length=202bp
PEVLSLTKQMDEDKTSIKIPGERLGSKSEFDAGEGTYIRNGFIYSKLCGK
KEINTKAGADKPTICVVRSGQNIVPEVNTVAMCKVINNNPRFSKVNILSV
GGTSLKGTFKGIIRKEDVRATQKDTVKMYESFRPGDIVLARILSLGDSQS
YFLSTAENELGVIYACSESGYSMIPISWCEMQCSHSGKKEHRKVAKVKIR
QV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011825XLOC_011825Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00021093TCONS_00021093Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025721Exosome_cplx_N_dom
IPR019495EXOSC1
IPR012340NA-bd_OB-fold
Vocabulary: Cellular Component
TermDefinition
GO:0000178exosome (RNase complex)
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0000178 exosome (RNase complex)
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025721Exosome complex component, N-terminal domainPFAMPF14382ECR1_Ncoord: 19..53
e-value: 4.4E-11
score: 42.3
NoneNo IPR availableGENE3D2.40.50.140coord: 70..164
e-value: 1.1E-14
score: 53.7
NoneNo IPR availableCDDcd05791S1_CSL4coord: 72..163
e-value: 2.09097E-44
score: 143.926
NoneNo IPR availableSUPERFAMILY110324Ribosomal L27 protein-likecoord: 17..55
IPR019495Exosome complex component CSL4PFAMPF10447EXOSC1coord: 89..145
e-value: 2.2E-14
score: 54.0
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 75..194

Blast
[Close]
BLAST of TCONS_00021093-protein vs. Swiss-Prot (Human)
Match: EXOS1 (Exosome complex component CSL4 OS=Homo sapiens GN=EXOSC1 PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.098e-66
Identity = 102/182 (56.04%), Postives = 135/182 (74.18%), Query Frame = 0 
Query:   19 IPGERLGSKSEFDAGEGTYIRNGFIYSKLCGKKEINTKAGADKPTICVVRSGQN-IVPEVNTVAMCKVINNNPRFSKVNILSVGGTSLKGTFKGIIRKEDVRATQKDTVKMYESFRPGDIVLARILSLGDSQS-YFLSTAENELGVIYACSESGYSMIPISWCEMQCSHSGKKEHRKVAKVK 198
            IPGERL +  E   G GTY R+G+I+S L G    +++ GA  P + VVR  ++ ++P+V  +  CKV + N RF+KV+IL VG   LK +F+G IRKEDVRAT+KD V++Y+SFRPGDIVLA+++SLGD+QS Y L+TAENELGV+ A SESG  M+PISWCEMQC  +  KE RKVA+V+
Sbjct:    9 IPGERLCNLEEGSPGSGTYTRHGYIFSSLAGCLMKSSENGA-LPVVSVVRETESQLLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESGIQMVPISWCEMQCPKTHTKEFRKVARVQ 189
The following BLAST results are available for this feature:
BLAST of TCONS_00021093-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EXOS15.098e-6656.04Exosome complex component CSL4 OS=Homo sapiens GN=... [more]
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