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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020975 ID=TCONS_00020975|Name=TCONS_00020975|organism=Clytia hemisphaerica|type=transcript|length=3918bpRun BLAST on NCBI protein sequence of TCONS_00020975-protein >TCONS_00020975-protein ID=TCONS_00020975-protein|Name=TCONS_00020975-protein|organism=Clytia hemisphaerica|type=polypeptide|length=917bp MRHLWMSLLLVSASLIQHAYANGVIANFTLEFKAVPQGEIMVLQNAIEDVRun BLAST on NCBI transcript from alignment at sc0000376:36725..46512+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020975 ID=TCONS_00020975|Name=TCONS_00020975|organism=Clytia hemisphaerica|type=transcript|length=9788bp|location=Sequence derived from alignment at sc0000376:36725..46512+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000376:36725..46512+ >TCONS_00020975 ID=TCONS_00020975|Name=TCONS_00020975|organism=Clytia hemisphaerica|type=CDS|length=41310bp|location=Sequence derived from alignment at sc0000376:36725..46512+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020975 vs. Swiss-Prot (Human)
Match: DSCAM (Down syndrome cell adhesion molecule OS=Homo sapiens GN=DSCAM PE=1 SV=2) HSP 1 Score: 92.0485 bits (227), Expect = 1.706e-18 Identity = 100/379 (26.39%), Postives = 160/379 (42.22%), Query Frame = 2
Query: 347 NGVIANFTLEFKAVPQGEIMVLQ---NAIEDVGYINDMPVRP-------ISLSSPDVPDQPVNVTAVALSATRVQLDWSKVIY-NHPSYYIVGYTVFFKEFGD--DNPWLSKTIMGNQTTSLIVDYLKPYTLYTSRVLAFHEAGNGISSSYVDCQTHEGLPTDVPPHFQCKQESETEIALSWDHLDPNKWNGYMKGYQLEFVKYNTGTNYTRMTF---TSGIRE-NILGGLEPFTKYEIYIRAMTNAGLGPRGWCVQSTQEGTPIRGPVITQWLPD-PAHPMESV-----------VRWDHIPEEYLNGILTGYLFTYGYSKVGKDVREFPDMTTVQLDKFTTTYVLRNLPVYTETKIEIYGLTSVGRGVASTPAFVET 1396
N +A + + K V + I LQ ED G+ + + I L+ + PD P + + A + L W+ N P I GY + K D D+ +K + ++ I+D + P + Y+ R+ A + G S+ + E P P + S I ++W + NG ++GYQ+ + +Y+TG N+ TSG E L L FT+Y + ++A AG GP S+QE +IT L D P++P E+V + W + +E LNGIL G+ Y + + ++ E ++TT Q + L L YT I++ T G GV S F T
Sbjct: 829 NPEMARYLVSTKEVGEEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPDPP-EIEIKDVKARTITLRWTMGFDGNSP---ITGYDIECKNKSDSWDSAQRTKDVSPQLNSATIID-IHPSSTYSIRMYAKNRIGKSEPSNELTITADEAAPDGPPQEVHLEPISSQSIRVTWKAPKKHLQNGIIRGYQIGYREYSTGGNFQFNIISVDTSGDSEVYTLDNLNKFTQYGLVVQACNRAGTGP------SSQE-------IITTTLEDVPSYPPENVQAIATSPESISISWSTLSKEALNGILQGFRVIYWANLMDGELGEIKNITTTQ-----PSLELDGLEKYTNYSIQVLAFTRAGDGVRSEQIFTRT 1184 The following BLAST results are available for this feature:
BLAST of TCONS_00020975 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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