TCONS_00020975-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00020975-protein
Unique NameTCONS_00020975-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length917

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00020975-protein ID=TCONS_00020975-protein|Name=TCONS_00020975-protein|organism=Clytia hemisphaerica|type=polypeptide|length=917bp
MRHLWMSLLLVSASLIQHAYANGVIANFTLEFKAVPQGEIMVLQNAIEDV
GYINDMPVRPISLSSPDVPDQPVNVTAVALSATRVQLDWSKVIYNHPSYY
IVGYTVFFKEFGDDNPWLSKTIMGNQTTSLIVDYLKPYTLYTSRVLAFHE
AGNGISSSYVDCQTHEGLPTDVPPHFQCKQESETEIALSWDHLDPNKWNG
YMKGYQLEFVKYNTGTNYTRMTFTSGIRENILGGLEPFTKYEIYIRAMTN
AGLGPRGWCVQSTQEGTPIRGPVITQWLPDPAHPMESVVRWDHIPEEYLN
GILTGYLFTYGYSKVGKDVREFPDMTTVQLDKFTTTYVLRNLPVYTETKI
EIYGLTSVGRGVASTPAFVETCRCPQNIYSAWFENKPYVSENPDGSVSGI
WPTYLKGMLDQMCGSCDYYSSSIYWDRSKSGHSPKRTSENNLKQMVADNV
HMHVAMFGRAEIETFQSDFKYVSVIGSPGIAWVVRDPEAELDKTAAIMTS
LASCWPAIIIIVLFSMVAGIVIWIADCHENKEDFPNESFIQGLYHGTYWA
FVSMTTVGYGDKTPRSFAAQIVAICWMLMGPIINGIVIGAITTSMTSINL
EGDPKIYGARVAAIHHSFEYNLGVRRNAILNHTNSDYPSGKIYTDNDQMI
GDLADRFVDGILIDSLVAADMADKLTERKLKIAKLIPEPAGWGIILSGDL
LRMETEIRSYVKFSQDLIKNMVENATDGKLEVKKVETEKDTGLIDQDSPE
FKNFVKFGLISYVVLAILGVIWEQIFKRIQNSKIKPFSEEHRELLEEDLA
ESVGEFCDEISEMINTMSGDHERELKRLFWKKGYSFGVDGWLREKTNNEE
ELKNKIRYHEIMSKDLGFFEKWKKGKQSAMSAIGIGPIRVSPAPQPSSKT
TSQQTLKEHTAEQETMA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011765XLOC_011765Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00020975TCONS_00020975Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003961FN3_dom
IPR013783Ig-like_fold
IPR013099K_chnl_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003961Fibronectin type IIISMARTSM00060FN3_2coord: 266..361
e-value: 180.0
score: 0.6
coord: 170..254
e-value: 0.0016
score: 27.7
coord: 69..154
e-value: 3.8E-7
score: 39.8
IPR003961Fibronectin type IIIPFAMPF00041fn3coord: 70..156
e-value: 1.2E-9
score: 38.3
coord: 173..256
e-value: 9.5E-9
score: 35.4
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 172..270
score: 16.079
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 71..167
score: 19.732
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 271..374
score: 9.563
IPR003961Fibronectin type IIICDDcd00063FN3coord: 171..255
e-value: 3.98971E-7
score: 47.8763
IPR003961Fibronectin type IIICDDcd00063FN3coord: 69..164
e-value: 1.37414E-10
score: 58.2767
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 67..263
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 288..372
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 66..162
e-value: 3.9E-16
score: 58.7
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 163..266
e-value: 5.7E-13
score: 48.5
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 267..376
e-value: 2.6E-5
score: 23.8
NoneNo IPR availableGENE3D1.10.287.70coord: 493..742
e-value: 3.7E-23
score: 81.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 887..917
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 383..486
coord: 594..697
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 501..599
IPR013099Potassium channel domainPFAMPF07885Ion_trans_2coord: 511..595
e-value: 1.1E-10
score: 41.2

Blast
[Close]
BLAST of TCONS_00020975-protein vs. Swiss-Prot (Human)
Match: PRTG (Protogenin OS=Homo sapiens GN=PRTG PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.463e-18
Identity = 69/247 (27.94%), Postives = 112/247 (45.34%), Query Frame = 0 
Query:   65 SPDVPDQPVNVTAVALSATRVQLDWSKVIYNHPSYYIVGYTVFFKEFGDDNPWLSKTIMGNQTTSLIVDYLKPYTLYTSRVLAFHEAGNGISSSYVDCQTHEGLPTDVPPHFQCKQESETEIALSWDHLDPNKWNGYMKGYQLEFVKYNTGTNYTRMTFTSGIRENILGGLEPFTKYEIYIRAMTNAGLGPRG-WCVQSTQEGTPIRGPVITQWLPDPAHPMESVVRWDHIPEEYLNGILTGYLFTY 310
            S D P  P NV A  +S++ + L W + +YN  S  ++ Y+V + +    N    + ++GN TT  I+D L+P + YT  ++A+   G    S +V   T E +P   PP       S T+I +SW  +      G +  Y+L F + +T  +   +       E +L GL+P + Y + I A T  GLG    W    T + T ++ P   +   +P +     VRW    E+     + GY   Y
Sbjct:  415 SEDRPSAPYNVHAETMSSSAILLAWERPLYN--SDKVIAYSVHYMKAEGLNNEEYQVVIGNDTTHYIIDDLEPASNYTFYIVAYMPMGASQMSDHVTQNTLEDVPLR-PPEISLTSRSPTDILISWLPIPAKYRRGQVVLYRLSF-RLSTENSIQVLELPGTTHEYLLEGLKPDSVYLVRITAATRVGLGESSVWTSHRTPKATSVKAPKSPELHLEPLNCTTISVRWQQDVED--TAAIQGYKLYY 655
The following BLAST results are available for this feature:
BLAST of TCONS_00020975-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRTG1.463e-1827.94Protogenin OS=Homo sapiens GN=PRTG PE=2 SV=1[more]
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