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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020954 ID=TCONS_00020954|Name=TCONS_00020954|organism=Clytia hemisphaerica|type=transcript|length=2221bpRun BLAST on NCBI protein sequence of TCONS_00020954-protein >TCONS_00020954-protein ID=TCONS_00020954-protein|Name=TCONS_00020954-protein|organism=Clytia hemisphaerica|type=polypeptide|length=463bp MDFKEALENVPELQKVQDEKKCRQQFEEMKLAIQHLMLMARQIKFKRSQLRun BLAST on NCBI transcript from alignment at sc0000374:185586..201692- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020954 ID=TCONS_00020954|Name=TCONS_00020954|organism=Clytia hemisphaerica|type=transcript|length=16107bp|location=Sequence derived from alignment at sc0000374:185586..201692- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000374:185586..201692- >TCONS_00020954 ID=TCONS_00020954|Name=TCONS_00020954|organism=Clytia hemisphaerica|type=CDS|length=18096bp|location=Sequence derived from alignment at sc0000374:185586..201692- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00020954 vs. Swiss-Prot (Human)
Match: DI3L1 (DIS3-like exonuclease 1 OS=Homo sapiens GN=DIS3L PE=1 SV=2) HSP 1 Score: 420.624 bits (1080), Expect = 7.374e-132 Identity = 221/478 (46.23%), Postives = 319/478 (66.74%), Query Frame = 3
Query: 600 DVTTCYLSSDLCSLISEQDRYAVSVIWELNPIG-DVINVWYGRTIICSKYKLFYEAAQQIATGEMDFKEALENVPELQKVQDEKKCRQQFEEMKLAIQHLMLMARQIKFKRSQLGAIDLQSSEVQLEMNEAKDIKGLAAKQPLEVHETIAECMIFANHWVAKKIKESFPSKSILRRHPPPNQEFFSTLKECAQAKGFTVNTSTNHLLADSLNRCTD-EDSNTNKIFRMLGTQAMMVASYFSTGSLKEELFSHYGLALDSYTHFTSPIRRYADVLVHRLLLASIGDE--LTNQSELLNNKDLQELCEHINVKHREADQAQKESLDFFQAMYFKEHSE-DDEICVVDALVYQFKSNGVLVFIPKFGIKGAVPLRDNEG-NIACHCGDKIKYVPGSMITEGAEIVLKYSNGKKDHIVNIFTYIKVRIKVISSTMHADRLQFEMTSFHS-NITMTTNEHTNGGKLNITKSDLIKDVKNTESE 2012
D+ LS+DLCSL+ DRYAVS++WEL+ ++ VWYGRTII S YKLFYEAAQ++ G + ++++PE + + DEK + + EE+ AI L +AR ++ KR GA++L+ EV +++++ K+I L KQPLEVHET+AECMI ANHWVAKKI ESFP +++LR+HPPP+QEFFS L+ECA+AKGF ++T +N LADSL+ D D N++ R + TQAM A YFSTGS EE F HYGLALD YTHFTSPIRRY+D++VHRLL+A+I + + + L +NKDL+ELC HIN +++ A +QK+S + FQ MYFK+ +E C+ D ++Y ++NGVL+FIP+FGIKGA L++ +G I+C ++ PGS+ +I ++G+ ++F ++ VRI + +S H+D ++ E+ S I T H + L KS+L+K+V + E
Sbjct: 537 DMLPSVLSADLCSLLGGVDRYAVSIMWELDKASYEIKKVWYGRTIIRSAYKLFYEAAQELLDGNLS---VVDDIPEFKDL-DEKSRQAKLEELVWAIGKLTDIARHVRAKRDGCGALELEGVEVCVQLDDKKNIHDLIPKQPLEVHETVAECMILANHWVAKKIWESFPHQALLRQHPPPHQEFFSELRECAKAKGFFIDTRSNKTLADSLDNANDPHDPIVNRLLRSMATQAMSNALYFSTGSCAEEEFHHYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISKDKKMEIKGNLFSNKDLEELCRHINNRNQAAQHSQKQSTELFQCMYFKDKDPATEERCISDGVIYSIRTNGVLLFIPRFGIKGAAYLKNKDGLVISCGPDSCSEWKPGSLQRFQNKITSTTTDGESV-TFHLFDHVTVRISIQASRCHSDTIRLEIISNKPYKIPNTELIHQSSPLL---KSELVKEVTKSVEE 1006 HSP 2 Score: 252.292 bits (643), Expect = 4.732e-71 Identity = 120/181 (66.30%), Postives = 146/181 (80.66%), Query Frame = 2
Query: 89 KVLVVPWDRKIPKIRITTRQKDRLTTERFVVRIDSWDVGSLYPNGHFVKSLGPAGNVETEIASILMEHGLSVIPFSEGILKEMPVNTKENEWKMCDGEIQRRKDLRESHLIFSIDPKGCEDVDDTLSVRKLANGNWELGVHIADVTYFVQPNSLTDLQARSKTTTVYLADRRHDMLPQFRS 631
K+LV PWD +IPKIRI+T+Q + L R VVRIDSW+ S+YPNGHFV+ LG G++E EIA+IL+E+ +SVIPFSE + EMPVNT E+ WK+ E Q+RKDLR+SHL+FSIDPKGCEDVDDTLSVR L NGN ELGVHIADVT+FV PNS D++AR++ TT YLADRR+DMLP S
Sbjct: 364 KILVTPWDYRIPKIRISTQQAETLQDFRVVVRIDSWESTSVYPNGHFVRVLGRIGDLEGEIATILVENSISVIPFSEAQMCEMPVNTPESPWKVSPEEEQKRKDLRKSHLVFSIDPKGCEDVDDTLSVRTLNNGNLELGVHIADVTHFVAPNSYIDIEARTRATTYYLADRRYDMLPSVLS 544 The following BLAST results are available for this feature:
BLAST of TCONS_00020954 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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