TCONS_00020954-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00020954-protein
Unique Name	TCONS_00020954-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	463

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00020954-protein ID=TCONS_00020954-protein|Name=TCONS_00020954-protein|organism=Clytia hemisphaerica|type=polypeptide|length=463bp
MDFKEALENVPELQKVQDEKKCRQQFEEMKLAIQHLMLMARQIKFKRSQL
GAIDLQSSEVQLEMNEAKDIKGLAAKQPLEVHETIAECMIFANHWVAKKI
KESFPSKSILRRHPPPNQEFFSTLKECAQAKGFTVNTSTNHLLADSLNRC
TDEDSNTNKIFRMLGTQAMMVASYFSTGSLKEELFSHYGLALDSYTHFTS
PIRRYADVLVHRLLLASIGDELTNQSELLNNKDLQELCEHINVKHREADQ
AQKESLDFFQAMYFKEHSEDDEICVVDALVYQFKSNGVLVFIPKFGIKGA
VPLRDNEGNIACHCGDKIKYVPGSMITEGAEIVLKYSNGKKDHIVNIFTY
IKVRIKVISSTMHADRLQFEMTSFHSNITMTTNEHTNGGKLNITKSDLIK
DVKNTESEMLNRKEENEKEVSKREKSSLKKKYGQTHSSVSMYEMFRSFKM
DSLTVDRGKATHK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_011750	XLOC_011750	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00020954	TCONS_00020954	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR033770	RRP44_S1
IPR022966	RNase_II/R_CS
IPR012340	NA-bd_OB-fold

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 234..254
None	No IPR available	COILS	Coil	Coil	coord: 399..431
None	No IPR available	SMART	SM00955	RNB_2	coord: 2..220 e-value: 2.7E-9 score: 7.4
None	No IPR available	PFAM	PF00773	RNB	coord: 15..216 e-value: 1.5E-38 score: 132.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 409..433
IPR033770	Exosome complex exonuclease RRP44, S1 domain	PFAM	PF17215	Rrp44_S1	coord: 277..361 e-value: 6.3E-7 score: 29.2
IPR022966	Ribonuclease II/R, conserved site	PROSITE	PS01175	RIBONUCLEASE_II	coord: 187..211
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 15..267
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 275..367

Blast

[Close]

BLAST of TCONS_00020954-protein vs. Swiss-Prot (Human)
Match: DI3L1 (DIS3-like exonuclease 1 OS=Homo sapiens GN=DIS3L PE=1 SV=2)

HSP 1 Score: 353.984 bits (907), Expect = 6.366e-112
Identity = 185/409 (45.23%), Postives = 272/409 (66.50%), Query Frame = 0

Query:    6 ALENVPELQKVQDEKKCRQQFEEMKLAIQHLMLMARQIKFKRSQLGAIDLQSSEVQLEMNEAKDIKGLAAKQPLEVHETIAECMIFANHWVAKKIKESFPSKSILRRHPPPNQEFFSTLKECAQAKGFTVNTSTNHLLADSLNRCTDE-DSNTNKIFRMLGTQAMMVASYFSTGSLKEELFSHYGLALDSYTHFTSPIRRYADVLVHRLLLASIGDE--LTNQSELLNNKDLQELCEHINVKHREADQAQKESLDFFQAMYFKEHSE-DDEICVVDALVYQFKSNGVLVFIPKFGIKGAVPLRDNEG-NIACHCGDKIKYVPGSMITEGAEIVLKYSNGKKDHIVNIFTYIKVRIKVISSTMHADRLQFEMTSFHS-NITMTTNEHTNGGKLNITKSDLIKDVKNTESE 408
             ++++PE + + DEK  + + EE+  AI  L  +AR ++ KR   GA++L+  EV +++++ K+I  L  KQPLEVHET+AECMI ANHWVAKKI ESFP +++LR+HPPP+QEFFS L+ECA+AKGF ++T +N  LADSL+   D  D   N++ R + TQAM  A YFSTGS  EE F HYGLALD YTHFTSPIRRY+D++VHRLL+A+I  +  +  +  L +NKDL+ELC HIN +++ A  +QK+S + FQ MYFK+     +E C+ D ++Y  ++NGVL+FIP+FGIKGA  L++ +G  I+C      ++ PGS+     +I    ++G+     ++F ++ VRI + +S  H+D ++ E+ S     I  T   H +   L   KS+L+K+V  +  E
Sbjct:  603 VVDDIPEFKDL-DEKSRQAKLEELVWAIGKLTDIARHVRAKRDGCGALELEGVEVCVQLDDKKNIHDLIPKQPLEVHETVAECMILANHWVAKKIWESFPHQALLRQHPPPHQEFFSELRECAKAKGFFIDTRSNKTLADSLDNANDPHDPIVNRLLRSMATQAMSNALYFSTGSCAEEEFHHYGLALDKYTHFTSPIRRYSDIVVHRLLMAAISKDKKMEIKGNLFSNKDLEELCRHINNRNQAAQHSQKQSTELFQCMYFKDKDPATEERCISDGVIYSIRTNGVLLFIPRFGIKGAAYLKNKDGLVISCGPDSCSEWKPGSLQRFQNKITSTTTDGES-VTFHLFDHVTVRISIQASRCHSDTIRLEIISNKPYKIPNTELIHQSSPLL---KSELVKEVTKSVEE 1006

The following BLAST results are available for this feature:

BLAST of TCONS_00020954-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00020954-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DI3L1	6.366e-112	45.23	DIS3-like exonuclease 1 OS=Homo sapiens GN=DIS3L P...	[more]

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TCONS_00020954-protein (polypeptide) - C. hemisphaerica