TCONS_00020876 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00020876
Unique Name	TCONS_00020876
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1779

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000373:87879..92929+
coding sequence from alignment at sc0000373:87879..92929+

transcript sequence

>TCONS_00020876 ID=TCONS_00020876|Name=TCONS_00020876|organism=Clytia hemisphaerica|type=transcript|length=1779bp
AGGGTTTGTCAGGTATCATCGGTTAGTCAAATGCagttatttgaaaattt
aatacATTGGCTTTAAAATAGATCAATAAGAATTAAATATTAATCGGAAT
ATTAACTTTCTTGGAAAATGATGATAGCTCAAAGACCGCGTTCAGTGACT
ATTGATTCTCTCTTGCCGACACTGGAATCTCCTTCTTTGACGTCCAAAAG
GAAACCGAGGAGTAGCAGTTACACGGTGTTGCCATCAAAGGCTACATCAC
CGACACCATTAGAATTTGCTGGCAGATACAAGATAGTTGTTGTTGGTGAA
GATAATTGTGGAAAAACATGTCTTTTGAATTCCTTCTCCAGGAGAACTTT
CACGATGGACACAGCAGTGACTTATGATGATGGTGTATCAACAATCCGTT
ATGGTTCTAAACAAGTCGAATTCGTCATGTGGGACTTATCAGGGTGTTCA
GATTATGACGGTTTAAGGATAGAGTTATACCGAGATACCGATCTCTTTCT
CGTGTGCTTCGATATTGGAAATAGCGAGTCTTTAGATGCTGCCATTGATA
TCTGGATACCAGAAATACAATTCGAGGAACCGAATGCTTCTTTCATTTTG
GTTGGGTGTAAACATGATTTAAGACAAGAATATTCCTTACCAACATCACC
AGAAACTTCCAGCACCATTTCACCTGAATATCGACACACTGTATCAAAAT
CAAAGGCAGAACAAGTAGCAAGAGACTGGGGAGCAAAAGATTACATTGAA
TGCTGTGCTAAAACTGGATACAATATACCAGAAGTCTTCAAGAGTGCTGC
ACAAGTATTTCTAGCATCAAACGAAGATAAAAGTAATGCTTACGGGTTTA
AAGGATTATCAATGTTTCGAAGAAGGAAATCGAATGACACTTCTGAGATA
TTCTACTCATCTTATGAGTCAAGTACACCATGTAGGTTTTATCCGAGTTA
TGCAACGAAGAGTTACTTAAGGAGAGCATCGGATGCTTCTACGTGATAAT
NTTTTATCCGAGTTATGCAACGAAGAGTTACTTAAGGAGAGCATCTGATG
CTTCTACGTGATAATATTCGTTGTGAAGAAGTTTTTGATGGTGCTCGCTA
GATCTTGTGGCAGGTGGcagcttcttttgatgtatctaCATATTTGGCTA
CCCCTGAAGAAGTTGGTGCTAGTAGACCTTGTGACAGGTGTAAAGAAATA
TGGTGATGTAACTCGATGCACCAACTCGATAAACTCAAATTCTTTTGGTA
CAccaaaatttgtacaaaatgcGATAATTAAACCTTTTCTCAATTTACTA
ATGGACAAGGGAAATCATGTTTTATGAGAGATATAAAAGATAACCAAACG
GCTGGGTATGAATTTATGGTTGTAGTTAATAGTTAATAGACGCCTTCTTG
ATTTCCTGGACGGGTGAAATTTATGACAAACTCTGTAGTTAATTGCTTCA
GATAGAAATCTCTTTCAATGTGGATATTAGAGAGTTTCTGCAACTTCAAA
ATCCAAAGTGTTGTTTCATATTGTCTGGTATAAGAtatatttaaaagttt
ataCGTTTTAGTATATAATAGAATTTATAATGAAAAATACCTAAATTTAC
CTATTAGATTATTGTaccaatttcattttgaaaattgtatccCAATACGA
ATAGAaaagattattttatttataaagatGATTAAgtaatgaaaagaaat
atttttattttggatAACCATTTTTTTTCCCATTTAAACAACATGCTATA
TATGACATTAGACTGTGAGGAGAATATAG

Run BLAST on NCBI

protein sequence of TCONS_00020876-protein

>TCONS_00020876-protein ID=TCONS_00020876-protein|Name=TCONS_00020876-protein|organism=Clytia hemisphaerica|type=polypeptide|length=292bp
MMIAQRPRSVTIDSLLPTLESPSLTSKRKPRSSSYTVLPSKATSPTPLEF
AGRYKIVVVGEDNCGKTCLLNSFSRRTFTMDTAVTYDDGVSTIRYGSKQV
EFVMWDLSGCSDYDGLRIELYRDTDLFLVCFDIGNSESLDAAIDIWIPEI
QFEEPNASFILVGCKHDLRQEYSLPTSPETSSTISPEYRHTVSKSKAEQV
ARDWGAKDYIECCAKTGYNIPEVFKSAAQVFLASNEDKSNAYGFKGLSMF
RRRKSNDTSEIFYSSYESSTPCRFYPSYATKSYLRRASDAST

Run BLAST on NCBI

transcript from alignment at sc0000373:87879..92929+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00020876 ID=TCONS_00020876|Name=TCONS_00020876|organism=Clytia hemisphaerica|type=transcript|length=5051bp|location=Sequence derived from alignment at sc0000373:87879..92929+ (Clytia hemisphaerica)
AGGGTTTGTCAGGTATCATCGGTTAGTCAAATGCagttatttgaaaattt
aatacATTGGCTTTAAAATAGATCAATAAGAATTAAATATTAATCGGAAT
ATTAACTTTCTTGGAAAATGATGATAGCTCAAAGACCGCGTTCAGTGACT
ATTGATTCTCTCTTGCCGACACTGGAATCTCCTTCTTTGACGTCCAAAAG
GAAACCGAGGGTGAGTAGGATTCCATTAGATTTATACGTACGAATGATAC
TTAATTTCCAGATTGTAATATAGGAAACTAAACATAATAGATAAGAGAGA
TCCTGATGTCGACATTAGGAAACTTATGTTTCCAACATATCCAGGAGCGT
TATGGTGAGAAAAAAGCAAACGTGAACAACAGACATCGAAATTTacataa
acattttttgagAAAGGTTGACTTTGGCTGAGCTTGCGTCTTATCTTTGT
CTACTTCTTTAGTATATGATTGTATCATGTAAACTTTAAACCCGAGGAGG
ATACGAGTATCTTCCTGAGTCATGTTCTTCCTGAAATTTAGAATGAATTT
CTCCCTAAGCAGGACGCACAAACCTTTTTATCAAAAGGCGCTAAAGCAGT
TTTTTCCATGAAATTGCCTTAAATCGAAACATTCTTAACTCGTTAGTATG
GGAAAATATTGATGTTGCTTCAAAGTGGGCAGATGTAAGCAAAAGTATTT
CTCAAGTGTAATCTTTTCAATCATCTACCTCACTTAAAACTCGTTTAGTT
AAACGAGGCTCAATTAACAAGATATTGAAATTTGACGACTAACGAATGGA
ATGCGCTGGAAAACAAAAACCTAGACACCTTAGGATTTGTGCCTTCAAAG
AAGAGTCTTCATTATTGTTTGGTTCTATAAACAGGTCATTATTGCTAGTC
ATCGCTAGCATATTTTATCCGAAGTTAATGAGATAATGATCGTCTAATGG
TTATCCGTATTACGAGTTTAAAGATAATCTGGGATCTTTTGGCAATTATG
AACTTTAAAGTTTGCTAACATGAACGTAAACAAtttatcttttaaaaatt
tcgctAATTTTAGATCCGTAAATTTTAATCAGGTCTTATTTCGGTCTTCA
AGGCAATCTGAATTTTCTTCTTGCTCTGCCCACAAACAGTTGTATGTGAG
ACGTTCAAGTTTAGCTGATTCAGGTTTAAAGCGCccataaaagaaaattt
aaacacaGATTACTCTATGACGTCTAGCGAGTACCCCACAAAAGCCGGGA
TTCTTCATTCCATTACTGCATAGAGAAAAACCTGTGACGTATAGGCTTTG
CTACATCCAAAAGTGACTCAAAAATGCTAATGCTAATTTCCCGCAATATT
AAGCATAGATTGTTATACCTATAAAACGAAAAGCATTTTTTACCTGTTCT
AAGTCCCTTCTAAACAGTACGCTTTTAAGAATagactttttcttaaaaaa
acaatactACATTTCTagtaaaatcttctttttttttcctttatagAGTA
GCAGTTACACGGTGTTGCCATCAAAGGCTACATCACCGACACCATTAGAA
TTTGCTGGCAGATACAAGATAGTTGTTGTTGGTGAAGATAATTGTGGAAA
AACATGTCTTTTGAATTCCTTCTCCAGGAGAACTTTCACGGTACATATTA
TATTAAAATATTCCAATTCGCCAGAttcctttttcaagtttttgtatgAA
GTTTTGTACGGATTCTAAAGAGGCATAATGATAAAGGCAGGAGTTTCAAT
TATcttataaagttttttattcaagaTTGTAACGACACCGAGAAAAATCT
GTTGCTACTTGGCATGAGTAATCGTTCAAAATAACAAAgcagtttttcct
ttttcacaTACTGTATCCTTATTGCAAAATGATTTCTTGCAGAAGTATAT
TGAGCAATTGTTACAGCCCATTCGgaaattcgaacattttgaaatattac
aaaaaatttTCCTCACTCTTTTGATTGTGCGAGTTTCGATACATCCTTCa
aggaaatcgaaaatttctgCGCCTTTGGTTAATTACTTGTGGTTCAGGAT
GCTTAGCTCTCCTTTTCATGATTGCTTCGTTTTCCCTTTGCACGTGTTTT
TATTTCCTGTGATTTgaagaacatttaaaaaataaaattccttaGATAAT
ATGTGCATAAAATCTGCATATACTTTGATAATTTCAAATACTAATGAACA
TTGGTGGGTGAAAAATCTGAGGGTAAAACCCACAAAACCTTAATGATTTC
AACAACATACACTTGACATCCTCCAATCCTTGCACTGTATCAAATATCTT
TTGTATGTTAAACCAGATGGACACAGCAGTGACTTATGATGATGGTGTAT
CAACAATCCGTTATGGTTCTAAACAAGTCGAATTCGTCATGTGGGACTTA
TCAGGtataaagaagaaaatatccaaacaTTTGATATGCCCCAGTTCACC
gttgcccagctggcacacaatgttgtttcaacgttcatctaacgttatat
ggatgttgtgaatattagataaacgttgaaacaacgttgtgtgccagcta
ggtTGCGAATGACCAATTGACTTCAAATTAATTTAATGCAGTGGCAGTTC
TGAAAGTGGTTCAAAAGTTTATGACGGTGAGTGtatttccttataaggaa
atgAAGGCTCTCTCCGTCAAAAGTTTTCAACCCCTTCAAAAAATCCACCA
CTGTAATGGACTGTATATTGActgaatttttatgaaatacgATTATATAT
CGAATTTAACCTAACTTCCACCAGTAAACTTCTGAAACTTTTATCAATTT
CCTTACTTACATTTTTACAGGGTGTTCAGATTATGACGGTTTAAGGATAG
AGTTATACCGAGATACCGATCTCTTTCTCGTGTGCTTCGATATTGGAAAT
AGCGAGTCTTTAGATGCTGCCATTGATATCGTATGTTTTTCGGATAAATT
ACTTTCTTAATAAAAAATACCTCCACTCTATATCAGTCTTTATGGTATTG
TACATCCTACAATAGcagtttttgataaataaaaatatacatGTAGCCGG
TACATTTCTCCAGTAAAATTTTAAACCCTACTACATCCGTCCGGGAGCTT
GGGTATAATCACAACGGAGTCAAGTTTCGTATCCTTCACAGCGCTACGTT
CTTGTCGCCCGCCCCCTCCCTAAATGGGATAAATGAGGCAGAGGGGTTAC
GATACTGGTTCCGAAGGATCCTGAATTTTATGATTCTTTTTATAATTCTT
TTTGACGTAGAAGAATCCTTTGGTCAAGAAATGGTAAAGGGCTAACTAGC
GGTGTATAGCAAGAACGTTTGAGGTATTAAATAGATAACGTAATAGTTTA
GGTAATTGTCAGGAAAATTAgcaaaacgggaaatattttattacattttC
ATTGTAATTTTGCACTTCGACAACCTTCCAATTAAAGCGCAAACGAATAA
TTTTGACCTTCAACTCAGAATTCATCTCTCATTTCAGTGGATACCAGAAA
TACAATTCGAGGAACCGAATGCTTCTTTCATTTTGGTTGGGTGTAAACAT
GATTTAAGACAAGAATATTCCTTACCAACATCACCAGAAACTTCCAGCAC
CATTTCACCTGAATATCGACACACTGTATCAAAATCAAAGGTACTAAAGT
TTTGATCTTTCAATATCTCTGTATTGATGCTGTGACCTGACAATCGGTAG
AGCTCTAGGAGACTTTAATATCTTGTTTTGTGCAAAGAAGATTGTAGCAA
CATCTCGATGTGTCGCGAGCACGAATTGGCAGTAATTTCCCTAGGATAGT
GAATGCTGCCCTGGATAGGGTTTGTTCCGTTCATTGGAAGGACTATCTCA
GATGATTGTAGTTTTTTTAGAACACTTACAAAAAATAACGTTCTGGTTTT
TCTTCAGATCCTCGAAATCGAACAAGGTTCATGAAATAATTATTTCGTAA
ATTTCATAATAACATTCTTCATTCCAGGCAGAACAAGTAGCAAGAGACTG
GGGAGCAAAAGATTACATTGAATGCTGTGCTAAAACTGGATACAATATAC
CAGAAGTCTTCAAGAGTGCTGCACAAGTATTTCTAGCATCAAACGAAGAT
AAAAGTAATGCTTACGGGTTTAAAGGATTATCAATGTTTCGAAGAAGGAA
ATCGAATGACACTTCTGAGATATTCTACTCATCTTATGAGTCAAGTACAC
CATGTAGGTTTTATCCGAGTTATGCAACGAAGAGTTACTTAAGGAGAGCA
TCGGATGCTTCTACGTGATAATNTTTTATCCGAGTTATGCAACGAAGAGT
TACTTAAGGAGAGCATCTGATGCTTCTACGTGATAATATTCGTTGTGAAG
AAGTTTTTGATGGTGCTCGCTAGATCTTGTGGCAGGTGGcagcttctttt
gatgtatctaCATATTTGGCTACCCCTGAAGAAGTTGGTGCTAGTAGACC
TTGTGACAGGTGTAAAGAAATATGGTGATGTAACTCGATGCACCAACTCG
ATAAACTCAAATTCTTTTGGTACAccaaaatttgtacaaaatgcGATAAT
TAAACCTTTTCTCAATTTACTAATGGACAAGGGAAATCATGTTTTATGAG
AGATATAAAAGATAACCAAACGGCTGGGTATGAATTTATGGTTGTAGTTA
ATAGTTAATAGACGCCTTCTTGATTTCCTGGACGGGTGAAATTTATGACA
AACTCTGTAGTTAATTGCTTCAGATAGAAATCTCTTTCAATGTGGATATT
AGAGAGTTTCTGCAACTTCAAAATCCAAAGTGTTGTTTCATATTGTCTGG
TATAAGAtatatttaaaagtttataCGTTTTAGTATATAATAGAATTTAT
AATGAAAAATACCTAAATTTACCTATTAGATTATTGTaccaatttcattt
tgaaaattgtatccCAATACGAATAGAaaagattattttatttataaaga
tGATTAAgtaatgaaaagaaatatttttattttggatAACCATTTTTTTT
CCCATTTAAACAACATGCTATATATGACATTAGACTGTGAGGAGAATATA
G

Coding sequence (CDS) from alignment at sc0000373:87879..92929+

>TCONS_00020876 ID=TCONS_00020876|Name=TCONS_00020876|organism=Clytia hemisphaerica|type=CDS|length=5274bp|location=Sequence derived from alignment at sc0000373:87879..92929+ (Clytia hemisphaerica)
ATGATGATAGCTCAAAGACCGCGTTCAGTGACTATTGATTCTCTCTTGCC
GACACTGGAATCTCCTTCTTTGACGTCCAAAAGGAAACCGAGGAGTAGCA
GTTACACGGTGTTGCCATCAAAGGCTACATCACCGACACCATTAGAATTT
GCTGGCAGATACAAGATAGTTGTTGTTGGTGAAGATAATTGTGGAAAAAC
ATGTCTTTTGAATTCCTTCTCCAGGAGAACTTTCACGATGGACACAGCAG
TGACTTATGATGATGGTGTATCAACAATCCGTTATGGTTCTAAACAAGTC
GAATTCGTCATGTGGGACTTATCAGGGTGTTCAGATTATGACGGTTTAAG
GATAGAGTTATACCGAGATACCGATCTCTTTCTCGTGTGCTTCGATATTG
GAAATAGCGAGTCTTTAGATGCTGCCATTGATATCTGGATACCAGAAATA
CAATTCGAGGAACCGAATGCTTCTTTCATTTTGGTTGGGTGTAAACATGA
TTTAAGACAAGAATATTCCTTACCAACATCACCAGAAACTTCCAGCACCA
TTTCACCTGAATATCGACACACTGTATCAAAATCAAAGGCAGAACAAGTA
GCAAGAGACTGGGGAGCAAAAGATTACATTGAATGCTGTGCTAAAACTGG
ATACAATATACCAGAAGTCTTCAAGAGTGCTGCACAAGTATTTCTAGCAT
CAAACGAAGATAAAAGTAATGCTTACGGGTTTAAAGGATTATCAATGTTT
CGAAGAAGGAAATCGAATGACACTTCTGAGATATTCTACTCATCTTATGA
GTCAAGTACACCATGTAGGTTTTATCCGAGTTATGCAACGAAGAGTTACT
TAAGGAGAGCATCGGATGCTTCTACGTGAATGATGATAGCTCAAAGACCG
CGTTCAGTGACTATTGATTCTCTCTTGCCGACACTGGAATCTCCTTCTTT
GACGTCCAAAAGGAAACCGAGGAGTAGCAGTTACACGGTGTTGCCATCAA
AGGCTACATCACCGACACCATTAGAATTTGCTGGCAGATACAAGATAGTT
GTTGTTGGTGAAGATAATTGTGGAAAAACATGTCTTTTGAATTCCTTCTC
CAGGAGAACTTTCACGATGGACACAGCAGTGACTTATGATGATGGTGTAT
CAACAATCCGTTATGGTTCTAAACAAGTCGAATTCGTCATGTGGGACTTA
TCAGGGTGTTCAGATTATGACGGTTTAAGGATAGAGTTATACCGAGATAC
CGATCTCTTTCTCGTGTGCTTCGATATTGGAAATAGCGAGTCTTTAGATG
CTGCCATTGATATCTGGATACCAGAAATACAATTCGAGGAACCGAATGCT
TCTTTCATTTTGGTTGGGTGTAAACATGATTTAAGACAAGAATATTCCTT
ACCAACATCACCAGAAACTTCCAGCACCATTTCACCTGAATATCGACACA
CTGTATCAAAATCAAAGGCAGAACAAGTAGCAAGAGACTGGGGAGCAAAA
GATTACATTGAATGCTGTGCTAAAACTGGATACAATATACCAGAAGTCTT
CAAGAGTGCTGCACAAGTATTTCTAGCATCAAACGAAGATAAAAGTAATG
CTTACGGGTTTAAAGGATTATCAATGTTTCGAAGAAGGAAATCGAATGAC
ACTTCTGAGATATTCTACTCATCTTATGAGTCAAGTACACCATGTAGGTT
TTATCCGAGTTATGCAACGAAGAGTTACTTAAGGAGAGCATCGGATGCTT
CTACGTGAATGATGATAGCTCAAAGACCGCGTTCAGTGACTATTGATTCT
CTCTTGCCGACACTGGAATCTCCTTCTTTGACGTCCAAAAGGAAACCGAG
GAGTAGCAGTTACACGGTGTTGCCATCAAAGGCTACATCACCGACACCAT
TAGAATTTGCTGGCAGATACAAGATAGTTGTTGTTGGTGAAGATAATTGT
GGAAAAACATGTCTTTTGAATTCCTTCTCCAGGAGAACTTTCACGATGGA
CACAGCAGTGACTTATGATGATGGTGTATCAACAATCCGTTATGGTTCTA
AACAAGTCGAATTCGTCATGTGGGACTTATCAGGGTGTTCAGATTATGAC
GGTTTAAGGATAGAGTTATACCGAGATACCGATCTCTTTCTCGTGTGCTT
CGATATTGGAAATAGCGAGTCTTTAGATGCTGCCATTGATATCTGGATAC
CAGAAATACAATTCGAGGAACCGAATGCTTCTTTCATTTTGGTTGGGTGT
AAACATGATTTAAGACAAGAATATTCCTTACCAACATCACCAGAAACTTC
CAGCACCATTTCACCTGAATATCGACACACTGTATCAAAATCAAAGGCAG
AACAAGTAGCAAGAGACTGGGGAGCAAAAGATTACATTGAATGCTGTGCT
AAAACTGGATACAATATACCAGAAGTCTTCAAGAGTGCTGCACAAGTATT
TCTAGCATCAAACGAAGATAAAAGTAATGCTTACGGGTTTAAAGGATTAT
CAATGTTTCGAAGAAGGAAATCGAATGACACTTCTGAGATATTCTACTCA
TCTTATGAGTCAAGTACACCATGTAGGTTTTATCCGAGTTATGCAACGAA
GAGTTACTTAAGGAGAGCATCGGATGCTTCTACGTGAATGATGATAGCTC
AAAGACCGCGTTCAGTGACTATTGATTCTCTCTTGCCGACACTGGAATCT
CCTTCTTTGACGTCCAAAAGGAAACCGAGGAGTAGCAGTTACACGGTGTT
GCCATCAAAGGCTACATCACCGACACCATTAGAATTTGCTGGCAGATACA
AGATAGTTGTTGTTGGTGAAGATAATTGTGGAAAAACATGTCTTTTGAAT
TCCTTCTCCAGGAGAACTTTCACGATGGACACAGCAGTGACTTATGATGA
TGGTGTATCAACAATCCGTTATGGTTCTAAACAAGTCGAATTCGTCATGT
GGGACTTATCAGGGTGTTCAGATTATGACGGTTTAAGGATAGAGTTATAC
CGAGATACCGATCTCTTTCTCGTGTGCTTCGATATTGGAAATAGCGAGTC
TTTAGATGCTGCCATTGATATCTGGATACCAGAAATACAATTCGAGGAAC
CGAATGCTTCTTTCATTTTGGTTGGGTGTAAACATGATTTAAGACAAGAA
TATTCCTTACCAACATCACCAGAAACTTCCAGCACCATTTCACCTGAATA
TCGACACACTGTATCAAAATCAAAGGCAGAACAAGTAGCAAGAGACTGGG
GAGCAAAAGATTACATTGAATGCTGTGCTAAAACTGGATACAATATACCA
GAAGTCTTCAAGAGTGCTGCACAAGTATTTCTAGCATCAAACGAAGATAA
AAGTAATGCTTACGGGTTTAAAGGATTATCAATGTTTCGAAGAAGGAAAT
CGAATGACACTTCTGAGATATTCTACTCATCTTATGAGTCAAGTACACCA
TGTAGGTTTTATCCGAGTTATGCAACGAAGAGTTACTTAAGGAGAGCATC
GGATGCTTCTACGTGAATGATGATAGCTCAAAGACCGCGTTCAGTGACTA
TTGATTCTCTCTTGCCGACACTGGAATCTCCTTCTTTGACGTCCAAAAGG
AAACCGAGGAGTAGCAGTTACACGGTGTTGCCATCAAAGGCTACATCACC
GACACCATTAGAATTTGCTGGCAGATACAAGATAGTTGTTGTTGGTGAAG
ATAATTGTGGAAAAACATGTCTTTTGAATTCCTTCTCCAGGAGAACTTTC
ACGATGGACACAGCAGTGACTTATGATGATGGTGTATCAACAATCCGTTA
TGGTTCTAAACAAGTCGAATTCGTCATGTGGGACTTATCAGGGTGTTCAG
ATTATGACGGTTTAAGGATAGAGTTATACCGAGATACCGATCTCTTTCTC
GTGTGCTTCGATATTGGAAATAGCGAGTCTTTAGATGCTGCCATTGATAT
CTGGATACCAGAAATACAATTCGAGGAACCGAATGCTTCTTTCATTTTGG
TTGGGTGTAAACATGATTTAAGACAAGAATATTCCTTACCAACATCACCA
GAAACTTCCAGCACCATTTCACCTGAATATCGACACACTGTATCAAAATC
AAAGGCAGAACAAGTAGCAAGAGACTGGGGAGCAAAAGATTACATTGAAT
GCTGTGCTAAAACTGGATACAATATACCAGAAGTCTTCAAGAGTGCTGCA
CAAGTATTTCTAGCATCAAACGAAGATAAAAGTAATGCTTACGGGTTTAA
AGGATTATCAATGTTTCGAAGAAGGAAATCGAATGACACTTCTGAGATAT
TCTACTCATCTTATGAGTCAAGTACACCATGTAGGTTTTATCCGAGTTAT
GCAACGAAGAGTTACTTAAGGAGAGCATCGGATGCTTCTACGTGAATGAT
GATAGCTCAAAGACCGCGTTCAGTGACTATTGATTCTCTCTTGCCGACAC
TGGAATCTCCTTCTTTGACGTCCAAAAGGAAACCGAGGAGTAGCAGTTAC
ACGGTGTTGCCATCAAAGGCTACATCACCGACACCATTAGAATTTGCTGG
CAGATACAAGATAGTTGTTGTTGGTGAAGATAATTGTGGAAAAACATGTC
TTTTGAATTCCTTCTCCAGGAGAACTTTCACGATGGACACAGCAGTGACT
TATGATGATGGTGTATCAACAATCCGTTATGGTTCTAAACAAGTCGAATT
CGTCATGTGGGACTTATCAGGGTGTTCAGATTATGACGGTTTAAGGATAG
AGTTATACCGAGATACCGATCTCTTTCTCGTGTGCTTCGATATTGGAAAT
AGCGAGTCTTTAGATGCTGCCATTGATATCTGGATACCAGAAATACAATT
CGAGGAACCGAATGCTTCTTTCATTTTGGTTGGGTGTAAACATGATTTAA
GACAAGAATATTCCTTACCAACATCACCAGAAACTTCCAGCACCATTTCA
CCTGAATATCGACACACTGTATCAAAATCAAAGGCAGAACAAGTAGCAAG
AGACTGGGGAGCAAAAGATTACATTGAATGCTGTGCTAAAACTGGATACA
ATATACCAGAAGTCTTCAAGAGTGCTGCACAAGTATTTCTAGCATCAAAC
GAAGATAAAAGTAATGCTTACGGGTTTAAAGGATTATCAATGTTTCGAAG
AAGGAAATCGAATGACACTTCTGAGATATTCTACTCATCTTATGAGTCAA
GTACACCATGTAGGTTTTATCCGAGTTATGCAACGAAGAGTTACTTAAGG
AGAGCATCGGATGCTTCTACGTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_011707	XLOC_011707	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00020876-protein	TCONS_00020876-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000373	supercontig	sc0000373:87879..92929 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.077845	0.0832311	0.0511716	0.0250317	0.304737	0.274375	19.3766	16.368	11.2407	9.19682	6.85598	9.80188	4.60255	3.29256	1.97868	2.50376	9.80502	2.59963	3.73789	4.87193	6.70238	6.86015	2.76133	2.94325	3.27972	3.32303	39.1227	16.4515	0.300975	0.32352

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001806	Small_GTPase
IPR005225	Small_GTP-bd_dom
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005525	GTP binding
GO:0003924	GTPase activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding

Blast

[Close]

BLAST of TCONS_00020876 vs. Swiss-Prot (Human)
Match: RHOC (Rho-related GTP-binding protein RhoC OS=Homo sapiens GN=RHOC PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.736e-29
Identity = 72/197 (36.55%), Postives = 102/197 (51.78%), Query Frame = 1

Query:  268 AGRYKIVVVGEDNCGKTCLLNSFSRRTFT-MDTAVTYDDGVSTIRYGSKQVEFVMWDLSGCSDYDGLRIELYRDTDLFLVCFDIGNSESLDAAIDIWIPEIQFEEPNASFILVGCKHDLRQXXXXXXXXXXXXXXXXXYRHTVSKSKAEQVARDWG--------AKDYIECCAKTGYNIPEVFKSAAQVFLASNEDK 831
            A R K+V+VG+  CGKTCLL  FS+  F  +     +++ ++ I    KQVE  +WD +G  DYD LR   Y DTD+ L+CF I + +SL+   + W PE++   PN   ILVG K DLRQ+                 R  ++K K E V  + G        A  Y+EC AKT   + EVF+ A +  L   ++K
Sbjct:    3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHT--------------RRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQVRKNK 185

The following BLAST results are available for this feature:

BLAST of TCONS_00020876 vs. Swiss-Prot (Human)

BLAST of TCONS_00020876 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RHOC	1.736e-29	36.55	Rho-related GTP-binding protein RhoC OS=Homo sapie...	[more]

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TCONS_00020876 (transcript) - C. hemisphaerica