TCONS_00020876-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00020876-protein
Unique NameTCONS_00020876-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length292

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00020876-protein ID=TCONS_00020876-protein|Name=TCONS_00020876-protein|organism=Clytia hemisphaerica|type=polypeptide|length=292bp
MMIAQRPRSVTIDSLLPTLESPSLTSKRKPRSSSYTVLPSKATSPTPLEF
AGRYKIVVVGEDNCGKTCLLNSFSRRTFTMDTAVTYDDGVSTIRYGSKQV
EFVMWDLSGCSDYDGLRIELYRDTDLFLVCFDIGNSESLDAAIDIWIPEI
QFEEPNASFILVGCKHDLRQEYSLPTSPETSSTISPEYRHTVSKSKAEQV
ARDWGAKDYIECCAKTGYNIPEVFKSAAQVFLASNEDKSNAYGFKGLSMF
RRRKSNDTSEIFYSSYESSTPCRFYPSYATKSYLRRASDAST
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_011707XLOC_011707Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00020876TCONS_00020876Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 93..115
score: 21.72
coord: 155..168
score: 45.19
coord: 54..75
score: 39.95
coord: 209..231
score: 30.32
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 56..234
e-value: 1.0E-32
score: 124.7
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 54..234
e-value: 2.0E-9
score: 8.1
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 51..234
e-value: 1.7E-4
score: -42.6
NoneNo IPR availableGENE3D3.30.70.1390coord: 52..116
e-value: 2.2E-11
score: 43.1
NoneNo IPR availableGENE3D3.40.50.300coord: 117..232
e-value: 2.5E-22
score: 78.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..42
NoneNo IPR availablePROSITEPS51419RABcoord: 49..272
score: 14.712
NoneNo IPR availableCDDcd00157Rhocoord: 55..230
e-value: 5.56337E-46
score: 153.468
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 55..230
e-value: 5.0E-35
score: 120.4
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 53..210
e-value: 9.8E-21
score: 72.2
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 53..231

Blast
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BLAST of TCONS_00020876-protein vs. Swiss-Prot (Human)
Match: RHOA (Transforming protein RhoA OS=Homo sapiens GN=RHOA PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 5.894e-33
Identity = 70/192 (36.46%), Postives = 101/192 (52.60%), Query Frame = 0 
Query:   51 AGRYKIVVVGEDNCGKTCLLNSFSRRTF-TMDTAVTYDDGVSTIRYGSKQVEFVMWDLSGCSDYDGLRIELYRDTDLFLVCFDIGNSESLDAAIDIWIPEIQFEEPNASFILVGCKHDLRQEYSLPTSPETSSTISPEYRHTVSKSKAEQVARDWGAKDYIECCAKTGYNIPEVFKSAAQVFLASNEDKSNA 241
            A R K+V+VG+  CGKTCLL  FS+  F  +     +++ V+ I    KQVE  +WD +G  DYD LR   Y DTD+ L+CF I + +SL+   + W PE++   PN   ILVG K DLR +        T   ++   +  V   +   +A   GA  Y+EC AKT   + EVF+ A +  L +   K  +
Sbjct:    3 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND------EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKKKS 188
The following BLAST results are available for this feature:
BLAST of TCONS_00020876-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RHOA5.894e-3336.46Transforming protein RhoA OS=Homo sapiens GN=RHOA ... [more]
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