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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020525 ID=TCONS_00020525|Name=TCONS_00020525|organism=Clytia hemisphaerica|type=transcript|length=3499bpRun BLAST on NCBI protein sequence of TCONS_00020525-protein >TCONS_00020525-protein ID=TCONS_00020525-protein|Name=TCONS_00020525-protein|organism=Clytia hemisphaerica|type=polypeptide|length=761bp MEDIEICFQPKKLQCQCINVCVKHPVECLQGKPTDRCHQNEAEESSMDIDRun BLAST on NCBI transcript from alignment at sc0000357:202803..211975- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020525 ID=TCONS_00020525|Name=TCONS_00020525|organism=Clytia hemisphaerica|type=transcript|length=9173bp|location=Sequence derived from alignment at sc0000357:202803..211975- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000357:202803..211975- >TCONS_00020525 ID=TCONS_00020525|Name=TCONS_00020525|organism=Clytia hemisphaerica|type=CDS|length=25146bp|location=Sequence derived from alignment at sc0000357:202803..211975- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020525 vs. Swiss-Prot (Human)
Match: ZER1 (Protein zer-1 homolog OS=Homo sapiens GN=ZER1 PE=1 SV=1) HSP 1 Score: 399.053 bits (1024), Expect = 2.122e-122 Identity = 201/492 (40.85%), Postives = 315/492 (64.02%), Query Frame = 2
Query: 983 VTTDVLKILA-GLPKLLSLDISG-------------------STGLTEDDLVPFLQRSEKLKFLGLSSTGLSFHRNLPAEKVTGEANEEQLLNSLEIY-KNRQRYVSIALRKLFTLARLQSCDNVRRCLELIVNSMQIYPRSDSINIAATASIYHLSREQHVANSDKELRKKIVEVVLDSMSNLKNVLQLQKNCCLTLCNFKIPVELEFVLFRVADLLLEALR-NHKDDYLRRIAIMLFNTIVCQNFENQKREIGYLGAVKTILNIIQEKLETRESDQLLETCWSSLWNMTDETPENCRDFLDFGGRRMFVKSLELYPNALELHRNIMGLMGNVGEVKELRSRLMTDEYINIFIGLLSDDTNRLEVSYNSCGLLSHILSDGEEAWTITSITRDECMLKIIECIDRWNLAAQRNINYRSFKPILRLLACVHAPAAQHWAVWALANLTKVYPHKYCKLIEQEGGLELINQILQNGDVYVRTRWLGQSVLENCAN 2392
+T +VL + L L+SLDISG S ++ ++PF L+FLGL L ++PA KV+G+ NEEQ+LN++E Y ++R S A+ LF +AR++ C+ + R L+L++ +++ + +I + +A++++L+ ++ + +LR+++++VVL+ M + + V +Q+NCCLTLCNF IP ELEF RV +LLL L +D+ ++RIA+ L N +VCQ + K +G +G V T+L +IQ+KL + DQ++E WS+LWN+TDETP+NC FL+F G ++F+ L+ +P ELHRN++GL+GNV EVKELR +LMT ++I++F LL + +EVSYN+CG+LSHI+ DG EAW + R+E ++ I W++ ++RNINYRSF+PILRLL +P +QHWA WAL NL VYP KYC L+ +EGG+ L+ I++ T+ + + V+E+C+N
Sbjct: 266 LTREVLSLFVQKLGNLMSLDISGHMILENCSISKMEEEAGQTSIEPSKSSIIPFRALKRPLQFLGLFENSLCRLTHIPAYKVSGDKNEEQVLNAIEAYTEHRPEITSRAINLLFDIARIERCNQLLRALKLVITALKCHKYDRNIQVTGSAALFYLTNSEYRSEQSVKLRRQVIQVVLNGMESYQEV-TVQRNCCLTLCNFSIPEELEFQYRRVNELLLSILNPTRQDESIQRIAVHLCNALVCQVDNDHKEAVGKMGFVVTMLKLIQKKLLDKTCDQVMEFSWSALWNITDETPDNCEMFLNFNGMKLFLDCLKEFPEKQELHRNMLGLLGNVAEVKELRPQLMTSQFISVFSNLLESKADGIEVSYNACGVLSHIMFDGPEAWGVCEPQREEVEERMWAAIQSWDINSRRNINYRSFEPILRLLPQGISPVSQHWATWALYNLVSVYPDKYCPLLIKEGGMPLLRDIIKMATARQETKEMARKVIEHCSN 756 The following BLAST results are available for this feature:
BLAST of TCONS_00020525 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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