TCONS_00020525-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00020525-protein
Unique Name	TCONS_00020525-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	761

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00020525-protein ID=TCONS_00020525-protein|Name=TCONS_00020525-protein|organism=Clytia hemisphaerica|type=polypeptide|length=761bp
MEDIEICFQPKKLQCQCINVCVKHPVECLQGKPTDRCHQNEAEESSMDID
MDNAVQSDGCYHNLELKRNIFIPDNICEGIFQQIIKQYPEQYINLFVDTS
KCRLTSIDLSTSETKYPLQDSDLISKLFDHPLKEINLSGCKTLSPSLNSL
QKCASTLQILDLSSVTGVRWCLILQNLKQLWRLNLQNTDIGYLHEHMKEI
GNLKNLKWLDLSCTCINNEGLVELLPLSSSLTWLSLYNCEFVTDEENLLQ
LLPQLTSLVHLDLSKKPVSDNNTIQNEKNNRIVTTDVLKILAGLPKLLSL
DISGSTGLTEDDLVPFLQRSEKLKFLGLSSTGLSFHRNLPAEKVTGEANE
EQLLNSLEIYKNRQRYVSIALRKLFTLARLQSCDNVRRCLELIVNSMQIY
PRSDSINIAATASIYHLSREQHVANSDKELRKKIVEVVLDSMSNLKNVLQ
LQKNCCLTLCNFKIPVELEFVLFRVADLLLEALRNHKDDYLRRIAIMLFN
TIVCQNFENQKREIGYLGAVKTILNIIQEKLETRESDQLLETCWSSLWNM
TDETPENCRDFLDFGGRRMFVKSLELYPNALELHRNIMGLMGNVGEVKEL
RSRLMTDEYINIFIGLLSDDTNRLEVSYNSCGLLSHILSDGEEAWTITSI
TRDECMLKIIECIDRWNLAAQRNINYRSFKPILRLLACVHAPAAQHWAVW
ALANLTKVYPHKYCKLIEQEGGLELINQILQNGDVYVRTRWLGQSVLENC
ANASKYDSNIV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_011516	XLOC_011516	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00020525	TCONS_00020525	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	L_dom-like
IPR011989	ARM-like
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain, L domain-like	GENE3D	3.80.10.10		coord: 256..384 e-value: 4.9E-4 score: 19.0 coord: 166..255 e-value: 3.3E-11 score: 42.4
IPR032675	Leucine-rich repeat domain, L domain-like	GENE3D	3.80.10.10		coord: 90..165 e-value: 0.12 score: 11.1
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 385..574 e-value: 7.4E-11 score: 41.3
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 582..756 e-value: 4.5E-11 score: 41.7
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 132..334
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 404..753

Blast

[Close]

BLAST of TCONS_00020525-protein vs. Swiss-Prot (Human)
Match: ZER1 (Protein zer-1 homolog OS=Homo sapiens GN=ZER1 PE=1 SV=1)

HSP 1 Score: 427.557 bits (1098), Expect = 7.356e-139
Identity = 265/743 (35.67%), Postives = 414/743 (55.72%), Query Frame = 0

Query:   64 LELKRNIFIPDNICEGIFQQIIK--------QYPEQYINLFVDTSKCRLTSIDLSTSETKYPLQDSDLISKLFDHPLKEINLSGCKTLSP-SLNSLQKCASTLQILDLSSVTGVRW-----------------CLIL------QNLKQLWRLNLQNTDIGYLHEHMKEIGNLKNLKWLDLSCTCINNEGLVELLPLSSSLTWLSLYNCEFVTDEENLLQLLPQLTSLVHLDLSKKPVSDNNTIQNEKNNRIVTTDVLKILA-GLPKLLSLDISGSTGL-------------------TEDDLVPFLQRSEKLKFLGLSSTGLSFHRNLPAEKVTGEANEEQLLNSLEIY-KNRQRYVSIALRKLFTLARLQSCDNVRRCLELIVNSMQIYPRSDSINIAATASIYHLSREQHVANSDKELRKKIVEVVLDSMSNLKNVLQLQKNCCLTLCNFKIPVELEFVLFRVADLLLEALR-NHKDDYLRRIAIMLFNTIVCQNFENQKREIGYLGAVKTILNIIQEKLETRESDQLLETCWSSLWNMTDETPENCRDFLDFGGRRMFVKSLELYPNALELHRNIMGLMGNVGEVKELRSRLMTDEYINIFIGLLSDDTNRLEVSYNSCGLLSHILSDGEEAWTITSITRDECMLKIIECIDRWNLAAQRNINYRSFKPILRLLACVHAPAAQHWAVWALANLTKVYPHKYCKLIEQEGGLELINQILQNGDVYVRTRWLGQSVLENCAN 752
            L L  +IF+P  IC+ +  + ++        +  E + +LF D    RLT I L        +QD DL   +    L E+ L+ C+ LS  SL +L+  + TL  L L   T + +                 C +L      +   +L  LNL         E +  +  L +L  LDLS   I       L     SL  L LYN +   D    ++++ QL  L HLD+S+  +S     +       +T +VL +    L  L+SLDISG   L                   ++  ++PF      L+FLGL    L    ++PA KV+G+ NEEQ+LN++E Y ++R    S A+  LF +AR++ C+ + R L+L++ +++ +    +I +  +A++++L+  ++ +    +LR+++++VVL+ M + + V  +Q+NCCLTLCNF IP ELEF   RV +LLL  L    +D+ ++RIA+ L N +VCQ   + K  +G +G V T+L +IQ+KL  +  DQ++E  WS+LWN+TDETP+NC  FL+F G ++F+  L+ +P   ELHRN++GL+GNV EVKELR +LMT ++I++F  LL    + +EVSYN+CG+LSHI+ DG EAW +    R+E   ++   I  W++ ++RNINYRSF+PILRLL    +P +QHWA WAL NL  VYP KYC L+ +EGG+ L+  I++       T+ + + V+E+C+N
Sbjct:   34 LRLHPDIFLPSEICDRLVNEYVELVNAACNFEPHESFFSLFSDPRSTRLTRIHLRED----LVQDQDL-EAIRKQDLVELYLTNCEKLSAKSLQTLRSFSHTLVSLSLFGCTNIFYEEENPGGCEDEYLVNPTCQVLVKDFTFEGFSRLRFLNLGRMIDWVPVESL--LRPLNSLAALDLSG--IQTSDAAFLTQWKDSLVSLVLYNMDLSDDH---IRVIVQLHKLRHLDISRDRLSSYYKFK-------LTREVLSLFVQKLGNLMSLDISGHMILENCSISKMEEEAGQTSIEPSKSSIIPFRALKRPLQFLGLFENSLCRLTHIPAYKVSGDKNEEQVLNAIEAYTEHRPEITSRAINLLFDIARIERCNQLLRALKLVITALKCHKYDRNIQVTGSAALFYLTNSEYRSEQSVKLRRQVIQVVLNGMESYQEV-TVQRNCCLTLCNFSIPEELEFQYRRVNELLLSILNPTRQDESIQRIAVHLCNALVCQVDNDHKEAVGKMGFVVTMLKLIQKKLLDKTCDQVMEFSWSALWNITDETPDNCEMFLNFNGMKLFLDCLKEFPEKQELHRNMLGLLGNVAEVKELRPQLMTSQFISVFSNLLESKADGIEVSYNACGVLSHIMFDGPEAWGVCEPQREEVEERMWAAIQSWDINSRRNINYRSFEPILRLLPQGISPVSQHWATWALYNLVSVYPDKYCPLLIKEGGMPLLRDIIKMATARQETKEMARKVIEHCSN 756

The following BLAST results are available for this feature:

BLAST of TCONS_00020525-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00020525-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ZER1	7.356e-139	35.67	Protein zer-1 homolog OS=Homo sapiens GN=ZER1 PE=1...	[more]

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TCONS_00020525-protein (polypeptide) - C. hemisphaerica