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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020408 ID=TCONS_00020408|Name=TCONS_00020408|organism=Clytia hemisphaerica|type=transcript|length=2539bp
CCCCATGCAATTGCAGCCAGCCTTGGAATTATacagaaaaataatttaca
atAAATACAATAATGAGATTGTTTTTAGcaggttgaaaaaaaattacgtt
aATTATAACCATGAACACATTGCATGTTCTCCTAATTGTTGGTGGAATAC
TGACTCTGCAAAATGTGTCAGCTGCTCCTGTAGATCAAACCACTGCAACA
ACTACAACAAAATCAGAAATAACGATACCGCCAAAGAGCACTCAAACAAC
CAATTCTTCAACTATTGCAGGGACTACAGTAGCACCAAACAATGGAAAAA
GACTTAAAACTGATTTCAAACACATTTCGATGAGAGCTATGGTTGTAGTA
GGTGTGATATGTGCAGTTGTCATTCTCTACTTTATCATACGTGGCGTTTG
CTCTCGAAGGCGgcaaaatagaaatagaaaatatgGTATGCTGAGGGAGA
ACCGTGATGACCGAATGGAGATGCGACCTCTATCTGAGGGTGacgatgat
gacgatgatgatgacCTCACATTATTTGATGCTTCTCAAAGGAAAAGCAA
GCGTTGAAGAAACAAAACTAAGACTTTAGGTTTATGTTTTTTATCTGAAT
TCTTTTACgttcatgatttttttattgCTCGGGTGTATATTAATAGGAAA
TTAAGTCTTCCTTCCATGTAAGGAGGTGTTCTTTACAGTTGTAGCTGGTT
TCAATTacagaagaaacaaaaattggCCTAAAAAGCATTTTTAAGCAGAA
CTAAGGACCCACCTTACATATGTAAAGTTTTTATTGTGACTCATATCAAG
ACAATACCTATGCAGAGATACGATTTTCTCCTCAAAACTGACGCCCCTTC
GCTCTTTTGCTGAAGATCTTAAACATTTtgagtcgaaaaaaaaaaaatta
tagttaTGTACCTCCATGAAATTTTAGGATTTTTCCAATGGTTCCTAGGG
TTCATAACAtatcttttttaatattttgggattttgtAACAAAGTTTTGA
CTGATTCTGAAGACTTGAGGTGTTTTGGATATAATTTCGCAAATCCTAAA
CTTTGAAAATAGAGTCGCAGGACAGTTTTGGAATCACCCGATTTCATTCA
ATTGTATTTCATTATAGGAGATACAATTTTTTTAGTGATCTCAGCCATAT
TTATCTTCTGTTTCTTGGGGGTAAAtatattttgtgaaatttttgagGAA
TTTATAAATTGTATATTTATTATATCAttgtttattattattattaacat
TAAATTCTACCTTTCCATTTAAAACTATTTTGTATAAAGATGAATACACA
AAACGacaaattttcttgaaataaaaataataacgtAAATACCACGTgat
tcataaaataaaaaacattcatACTAAACAGTAACACACAAAACTAAATT
GGTCGTTGTCGAAATTCAAAAGATTTTCGTTCAAAAGCAAAATGACATTG
AAGCTTTGAAAAAGCTTTATAGTGAGATTTACCTTTGTTCAACTACCTGG
TGTGCCCCAGAAATAAGTTACTTTCTTTTGACTTGATATTGTAGGCaata
gaaaagagatttttcaaagatcatTTCGGAATCTATTCAGAGGAAAGCCT
AGTTTTccccttttttgacatttttaaaaattgacagAATACtggttttt
gaacataacttttgaaccaattaatacaccaaattttaagttaggctttc
ctctgaatgattccaaaacaatatttgaaaaatctcttcTTGCACAACcg
gtacaattttgaaaaaattggatttgCTATTAtaaacttttgtctttttt
cattCTTAAATCTTAGTTCCATACCACAGTTTATAAATTTACCTACCTCA
CCATTCTTTCATAGCagaattatacaaaaatgaaaatgtttctaTCCAAG
GAATTTCGACGAGTTGTTTCACAATACGGGAACGTTCTCTACAAGGTAAT
CTACCCTTTCCAATGTTTCAAACAGCCAGCATTTATTCGTCTACTGTTCT
ACAATCCAAAACTTGTTATCATGAATATCAGTCATATAACATTTTGTAAC
ATATTTTTAATAATATCGATAGTAATCGTTATAATATCGTGGTTGATTAT
GATACACTTTATTACGACGTTGGTTATGGTGTTGATAATTTTGATGTCTT
GGGATATTATATCGTTTGAACGGCATTGAAGCATCACTCTCATCCCCACC
CATGAAAGGCATCGTAAATTTTCGTAGGATATCTACCAATTTGCCTTGAT
CAACATGACCTAAtgttctttgtttactttcattttctcgTTCTTCTTCT
CTAGATACTTCAGTAGGGACAAAAGGAAGTTTCACCAAGTGAGGTTGTTG
GCGAGCTGGCGCCCCACCACCCAACATATTCATCATGAGCGGATTATTGA
AAAATGCCGCTGGTGACGGCCCGATGATTTCAACGATTGTAGGTCGTTGT
ATTTTATGCTGACATTGCGGCCCGGTGAAACCATGGAGACAGCGACACAC
ATTATGACCAAGGCATTCACCACCGTTTTGGCATCTTTG Run BLAST on NCBI transcript from alignment at sc0000356:153891..158379+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020408 ID=TCONS_00020408|Name=TCONS_00020408|organism=Clytia hemisphaerica|type=transcript|length=4489bp|location=Sequence derived from alignment at sc0000356:153891..158379+ (Clytia hemisphaerica)
CCCCATGCAATTGCAGCCAGCCTTGGAATTATacagaaaaataatttaca
atAAATACAATAATGAGATTGTTTTTAGcaggttgaaaaaaaattacgtt
aATTATAACCATGAACACATTGCATGTTCTCCTAATTGTTGGTGGAATAC
TGACTCTGCAAAATGTGTCAGCTGCTCCTGTAGATCAAACCACTGCAACA
ACTACAACAAAATCAGAAATAACGATACCGCCAAAGAGCACTCAAACAAC
CAATTCTTCAACTATTGCAGGTTGGTTGTAAATCTCTTTATTTTAATATT
ATAATCAGAAGATCTTTTAAATAATACTATGCAATTTAATTCATTTTAGT
ATTCCAATTTACATGAGCTTTGGAACTCAAAATCAGAACTTTCTGTTAAT
CATTAAGTTCATAACTCTGTGATTGTCCGCCTTATTttaaaagacacttt
gttttttttactataGGGACTACAGTAGCACCAAACAATGGAAAAAGACT
TAAAACTGATTTCAAACACATTTCGATGAGAGCTATGGTTGTAGTAAGTA
CCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCTTTCCAATGAAAtgggaatggttc
ttttagaatttttcgattttgagaaatttagtttcaaagagagaaacttt
tttgtggcgcacccggtatatttcacctttttttttaacactGGGCTCTT
CCAGGAAAAATCCGTTCATGTGGGTGTCAAAGAGGTTAAATTGATGATTG
TCCATGGGTTTTAACccatgtccatggggtgaaaaatgaaaatgtccagg
gataattcattgaaaaaatagtATATACTCCACCCCCTTTTTTCTGAGCT
GTCTAATATTCTCTGCTAATCATTTGCATGATATTATTTATACTGATTGC
TGTCCTCTTACAAGAGATGGGAAAATGTACGTTTATTTAGGTACACTAAA
ATTCATTTACATACAAACACCAATGAATTCAGAAAGATAATAGCATATAA
TTTTGCCATCTTTAATCTGTGATTTACAGCtacaaaattttttaagaaat
tattATCTTTGTATTTTTCTAGGTAGGTGTGATATGTGCAGTTGTCATTC
TCTACTTTATCATACGTGGCGTTTGCTCTCGAAGGCGgcaaaatagaaat
agaaagtaaGCTACTGAATATTATTATAATGGTAGCAAAATATGTGTGAT
GCTTCATATTACAAGTCTTACATTTACATTTATCTATGATTTTGGGGTTC
TAAGCAATGAATAAACACAGTATAATTTCCCAACGTTGATTTATCTTGat
atttcatatatatttttaattttgatttagtTTTAAAAAATGCTTCTTCC
ATAATCGTCTAGTCGAAGCTATAGATCTtgtcggagttttttatttttct
aaaaaaaacgatgcattgtgggattgtttcgggggtaatACAATATGACA
ATCTCTTaagaattcctcgagggaattctattgtaatagtaacaatccca
caatgcattgctGTTTTAGGAAAATCAAAAGCTTGGACAGTGTCTTGTTG
TGTATTTGTGATAGCAAACAATCATTCATTAAGGGAATTCATTGGTCTAA
CTATCTATCTAAAATTCTACTCCTTGAAGGACTTGAAGCCACAGAGCAgc
atttttgactatttttttattttttttaagatatgGTATGCTGAGGGAGA
ACCGTGATGACCGAATGGAGATGCGACCTCTATCTGAGGGTGacgatgat
gacgatgatgatgacCTCACATTATTTGATGCTTCTCAAAGGAAAAGCAA
GCGTTGAAGAAACAAAACTAAGACTTTAGGTTTATGTTTTTTATCTGAAT
TCTTTTACgttcatgatttttttattgCTCGGGTGTATATTAATAGGAAA
TTAAGTCTTCCTTCCATGTAAGGAGGTGTTCTTTACAGTTGTAGCTGGTT
TCAATTacagaagaaacaaaaattggCCTAAAAAGCATTTTTAAGCAGAA
CTAAGGACCCACCTTACATATGTAAAGTTTTTATTGTGACTCATATCAAG
ACAATACCTATGCAGAGATACGATTTTCTCCTCAAAACTGACGCCCCTTC
GCTCTTTTGCTGAAGATCTTAAACATTTtgagtcgaaaaaaaaaaaatta
tagttaTGTACCTCCATGAAATTTTAGGATTTTTCCAATGGTTCCTAGGG
TTCATAACAtatcttttttaatattttgggattttgtAACAAAGTTTTGA
CTGATTCTGAAGACTTGAGGTGTTTTGGATATAATTTCGCAAATCCTAAA
CTTTGAAAATAGAGTCGCAGGACAGTTTTGGAATCACCCGATTTCATTCA
ATTGTATTTCATTATAGGAGATACAATTTTTTTAGTGATCTCAGCCATAT
TTATCTTCTGTTTCTTGGGGGTAAAtatattttgtgaaatttttgagGAA
TTTATAAATTGTATATTTATTATATCAttgtttattattattattaacat
TAAATTCTACCTTTCCATTTAAAACTATTTTGTATAAAGATGAATACACA
AAACGacaaattttcttgaaataaaaataataacgtAAATACCACGTgat
tcataaaataaaaaacattcatACTAAACAGTAACACACAAAACTAAATT
GGTCGTTGTCGAAATTCAAAAGATTTTCGTTCAAAAGCAAAATGACATTG
AAGCTTTGAAAAAGCTTTATAGTGAGATTTACCTTTGTTCAACTACCTGG
TGTGCCCCAGAAATAAGTTACTTTCTTTTGACTTGATATTGTAGGCaata
gaaaagagatttttcaaagatcatTTCGGAATCTATTCAGAGGAAAGCCT
AGTTTTccccttttttgacatttttaaaaattgacagAATACtggttttt
gaacataacttttgaaccaattaatacaccaaattttaagttaggctttc
ctctgaatgattccaaaacaatatttgaaaaatctcttcTTGCACAACcg
gtacaattttgaaaaaattggatttgCTATTAtaaacttttgtctttttt
cattCTTAAATCTTAGTTCCATACCACAGTTTATAAATTTACCTACCTCA
CCATTCTTTCATAGCagaattatacaaaaatgaaaatgtttctaTCCAAG
GAATTTCGACGAGTTGTTTCACAATACGGGAACGTTCTCTACAAGGTAAT
CTACCCTTTCCAATGTTTCAAACAGCCAGCATTTATTCGTCTACTGTTCT
ACAATCCAAAACTTGTTATCATGAATATCAGTCATATAACATTTTGTAAC
ATATTTTTAATAATATCGATAGTAATCGTTATAATATCGTGGTTGATTAT
GATACACTTTATTACGACGTTGGTTATGGTGTTGATAATTTTGATGTCTT
GGGATATTATATCGTTTGAACGGCATTGAAGCATCACTCTCATCCCCACC
CATGAAAGGCATCGTAAATTTTCGTAGGATATCTACCAATTTGCCTTGAT
CAACATGACCTAAtgttctttgtttactttcattttctcgTTCTTCTTCT
CTAGATACTTCAGTAGGGACAAAAGGAAGTTTCACCAAGTGAGGTTGTTG
GCGAGCTGGCGCCCCACCACCCAACATATTCATCATGAGCGGATTATTGA
AAAATGCCGCTGGTGACGGCCCGATGATTTCAACGATTGTAGGTCGTTGT
ATTTTATGCTGACATTGCGGCCCGGTGAAACCATGGAGACAGCGACACAC
ATTATGACCAAGGCATTCACCACCGTTTTGGCATCTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020408-exon-sc0000356-1491911889:153891..154160 | TCONS_00020408-exon-sc0000356-1491911889:153891..154160 | Clytia hemisphaerica | exon |
| TCONS_00020408-exon-sc0000356-1510915933:153891..154160 | TCONS_00020408-exon-sc0000356-1510915933:153891..154160 | Clytia hemisphaerica | exon |
| TCONS_00020408-exon-sc0000356-1575043694:153891..154160 | TCONS_00020408-exon-sc0000356-1575043694:153891..154160 | Clytia hemisphaerica | exon |
| TCONS_00020408-exon-sc0000356-1491911889:154357..154433 | TCONS_00020408-exon-sc0000356-1491911889:154357..154433 | Clytia hemisphaerica | exon |
| TCONS_00020408-exon-sc0000356-1510915933:154357..154433 | TCONS_00020408-exon-sc0000356-1510915933:154357..154433 | Clytia hemisphaerica | exon |
| TCONS_00020408-exon-sc0000356-1575043694:154357..154433 | TCONS_00020408-exon-sc0000356-1575043694:154357..154433 | Clytia hemisphaerica | exon |
| TCONS_00020408-exon-sc0000356-1491911889:155663..155745 | TCONS_00020408-exon-sc0000356-1491911889:155663..155745 | Clytia hemisphaerica | exon |
| TCONS_00020408-exon-sc0000356-1510915933:155663..155745 | TCONS_00020408-exon-sc0000356-1510915933:155663..155745 | Clytia hemisphaerica | exon |
| TCONS_00020408-exon-sc0000356-1575043694:155663..155745 | TCONS_00020408-exon-sc0000356-1575043694:155663..155745 | Clytia hemisphaerica | exon |
| TCONS_00020408-exon-sc0000356-1491911889:156271..158379 | TCONS_00020408-exon-sc0000356-1491911889:156271..158379 | Clytia hemisphaerica | exon |
| TCONS_00020408-exon-sc0000356-1510915933:156271..158379 | TCONS_00020408-exon-sc0000356-1510915933:156271..158379 | Clytia hemisphaerica | exon |
| TCONS_00020408-exon-sc0000356-1575043694:156271..158379 | TCONS_00020408-exon-sc0000356-1575043694:156271..158379 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000356 | supercontig | sc0000356:153891..158379 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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