XLOC_011466 (gene) - C. hemisphaerica

Overview
NameXLOC_011466
Unique NameXLOC_011466
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000356:153891..158379+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_011466 ID=XLOC_011466|Name=XLOC_011466|organism=Clytia hemisphaerica|type=gene|length=4489bp|location=Sequence derived from alignment at sc0000356:153891..158379+ (Clytia hemisphaerica)
CCCCATGCAATTGCAGCCAGCCTTGGAATTATacagaaaaataatttaca
atAAATACAATAATGAGATTGTTTTTAGcaggttgaaaaaaaattacgtt
aATTATAACCATGAACACATTGCATGTTCTCCTAATTGTTGGTGGAATAC
TGACTCTGCAAAATGTGTCAGCTGCTCCTGTAGATCAAACCACTGCAACA
ACTACAACAAAATCAGAAATAACGATACCGCCAAAGAGCACTCAAACAAC
CAATTCTTCAACTATTGCAGGTTGGTTGTAAATCTCTTTATTTTAATATT
ATAATCAGAAGATCTTTTAAATAATACTATGCAATTTAATTCATTTTAGT
ATTCCAATTTACATGAGCTTTGGAACTCAAAATCAGAACTTTCTGTTAAT
CATTAAGTTCATAACTCTGTGATTGTCCGCCTTATTttaaaagacacttt
gttttttttactataGGGACTACAGTAGCACCAAACAATGGAAAAAGACT
TAAAACTGATTTCAAACACATTTCGATGAGAGCTATGGTTGTAGTAAGTA
CCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCTTTCCAATGAAAtgggaatggttc
ttttagaatttttcgattttgagaaatttagtttcaaagagagaaacttt
tttgtggcgcacccggtatatttcacctttttttttaacactGGGCTCTT
CCAGGAAAAATCCGTTCATGTGGGTGTCAAAGAGGTTAAATTGATGATTG
TCCATGGGTTTTAACccatgtccatggggtgaaaaatgaaaatgtccagg
gataattcattgaaaaaatagtATATACTCCACCCCCTTTTTTCTGAGCT
GTCTAATATTCTCTGCTAATCATTTGCATGATATTATTTATACTGATTGC
TGTCCTCTTACAAGAGATGGGAAAATGTACGTTTATTTAGGTACACTAAA
ATTCATTTACATACAAACACCAATGAATTCAGAAAGATAATAGCATATAA
TTTTGCCATCTTTAATCTGTGATTTACAGCtacaaaattttttaagaaat
tattATCTTTGTATTTTTCTAGGTAGGTGTGATATGTGCAGTTGTCATTC
TCTACTTTATCATACGTGGCGTTTGCTCTCGAAGGCGgcaaaatagaaat
agaaagtaaGCTACTGAATATTATTATAATGGTAGCAAAATATGTGTGAT
GCTTCATATTACAAGTCTTACATTTACATTTATCTATGATTTTGGGGTTC
TAAGCAATGAATAAACACAGTATAATTTCCCAACGTTGATTTATCTTGat
atttcatatatatttttaattttgatttagtTTTAAAAAATGCTTCTTCC
ATAATCGTCTAGTCGAAGCTATAGATCTtgtcggagttttttatttttct
aaaaaaaacgatgcattgtgggattgtttcgggggtaatACAATATGACA
ATCTCTTaagaattcctcgagggaattctattgtaatagtaacaatccca
caatgcattgctGTTTTAGGAAAATCAAAAGCTTGGACAGTGTCTTGTTG
TGTATTTGTGATAGCAAACAATCATTCATTAAGGGAATTCATTGGTCTAA
CTATCTATCTAAAATTCTACTCCTTGAAGGACTTGAAGCCACAGAGCAgc
atttttgactatttttttattttttttaagatatgGTATGCTGAGGGAGA
ACCGTGATGACCGAATGGAGATGCGACCTCTATCTGAGGGTGacgatgat
gacgatgatgatgacCTCACATTATTTGATGCTTCTCAAAGGAAAAGCAA
GCGTTGAAGAAACAAAACTAAGACTTTAGGTTTATGTTTTTTATCTGAAT
TCTTTTACgttcatgatttttttattgCTCGGGTGTATATTAATAGGAAA
TTAAGTCTTCCTTCCATGTAAGGAGGTGTTCTTTACAGTTGTAGCTGGTT
TCAATTacagaagaaacaaaaattggCCTAAAAAGCATTTTTAAGCAGAA
CTAAGGACCCACCTTACATATGTAAAGTTTTTATTGTGACTCATATCAAG
ACAATACCTATGCAGAGATACGATTTTCTCCTCAAAACTGACGCCCCTTC
GCTCTTTTGCTGAAGATCTTAAACATTTtgagtcgaaaaaaaaaaaatta
tagttaTGTACCTCCATGAAATTTTAGGATTTTTCCAATGGTTCCTAGGG
TTCATAACAtatcttttttaatattttgggattttgtAACAAAGTTTTGA
CTGATTCTGAAGACTTGAGGTGTTTTGGATATAATTTCGCAAATCCTAAA
CTTTGAAAATAGAGTCGCAGGACAGTTTTGGAATCACCCGATTTCATTCA
ATTGTATTTCATTATAGGAGATACAATTTTTTTAGTGATCTCAGCCATAT
TTATCTTCTGTTTCTTGGGGGTAAAtatattttgtgaaatttttgagGAA
TTTATAAATTGTATATTTATTATATCAttgtttattattattattaacat
TAAATTCTACCTTTCCATTTAAAACTATTTTGTATAAAGATGAATACACA
AAACGacaaattttcttgaaataaaaataataacgtAAATACCACGTgat
tcataaaataaaaaacattcatACTAAACAGTAACACACAAAACTAAATT
GGTCGTTGTCGAAATTCAAAAGATTTTCGTTCAAAAGCAAAATGACATTG
AAGCTTTGAAAAAGCTTTATAGTGAGATTTACCTTTGTTCAACTACCTGG
TGTGCCCCAGAAATAAGTTACTTTCTTTTGACTTGATATTGTAGGCaata
gaaaagagatttttcaaagatcatTTCGGAATCTATTCAGAGGAAAGCCT
AGTTTTccccttttttgacatttttaaaaattgacagAATACtggttttt
gaacataacttttgaaccaattaatacaccaaattttaagttaggctttc
ctctgaatgattccaaaacaatatttgaaaaatctcttcTTGCACAACcg
gtacaattttgaaaaaattggatttgCTATTAtaaacttttgtctttttt
cattCTTAAATCTTAGTTCCATACCACAGTTTATAAATTTACCTACCTCA
CCATTCTTTCATAGCagaattatacaaaaatgaaaatgtttctaTCCAAG
GAATTTCGACGAGTTGTTTCACAATACGGGAACGTTCTCTACAAGGTAAT
CTACCCTTTCCAATGTTTCAAACAGCCAGCATTTATTCGTCTACTGTTCT
ACAATCCAAAACTTGTTATCATGAATATCAGTCATATAACATTTTGTAAC
ATATTTTTAATAATATCGATAGTAATCGTTATAATATCGTGGTTGATTAT
GATACACTTTATTACGACGTTGGTTATGGTGTTGATAATTTTGATGTCTT
GGGATATTATATCGTTTGAACGGCATTGAAGCATCACTCTCATCCCCACC
CATGAAAGGCATCGTAAATTTTCGTAGGATATCTACCAATTTGCCTTGAT
CAACATGACCTAAtgttctttgtttactttcattttctcgTTCTTCTTCT
CTAGATACTTCAGTAGGGACAAAAGGAAGTTTCACCAAGTGAGGTTGTTG
GCGAGCTGGCGCCCCACCACCCAACATATTCATCATGAGCGGATTATTGA
AAAATGCCGCTGGTGACGGCCCGATGATTTCAACGATTGTAGGTCGTTGT
ATTTTATGCTGACATTGCGGCCCGGTGAAACCATGGAGACAGCGACACAC
ATTATGACCAAGGCATTCACCACCGTTTTGGCATCTTTG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00020408TCONS_00020408Clytia hemisphaericatranscript
TCONS_00020409TCONS_00020409Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000356supercontigsc0000356:153891..158379 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.65	6.69	3.26	3.05	7.2	4.8	9.32	9.53	8.09	8.24	7.8	7.38	7.02	6.26	6.43	7.63	6.75	7.03	5	7.52	7.02	7.03	9.6	9.16	8.89	8.43	5.05	3.87	7.62	8.09