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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020409 ID=TCONS_00020409|Name=TCONS_00020409|organism=Clytia hemisphaerica|type=transcript|length=2386bp
GTTTTTAGcaggttgaaaaaaaattacgttaATTATAACCATGAACACAT
TGCATGTTCTCCTAATTGTTGGTGGAATACTGACTCTGCAAAATGTGTCA
GCTGCTCCTGTAGATCAAACCACTGCAACAACTACAACAAAATCAGAAAT
AACGATACCGCCAAAGAGCACTCAAACAACCAATTCTTCAACTATTGCAG
GGACTACAGTAGCACCAAACAATGGAAAAAGACTTAAAACTGATTTCAAA
CACATTTCGATGAGAGCTATGGTTGTAatatgGTATGCTGAGGGAGAACC
GTGATGACCGAATGGAGATGCGACCTCTATCTGAGGGTGacgatgatgac
gatgatgatgacCTCACATTATTTGATGCTTCTCAAAGGAAAAGCAAGCG
TTGAAGAAACAAAACTAAGACTTTAGGTTTATGTTTTTTATCTGAATTCT
TTTACgttcatgatttttttattgCTCGGGTGTATATTAATAGGAAATTA
AGTCTTCCTTCCATGTAAGGAGGTGTTCTTTACAGTTGTAGCTGGTTTCA
ATTacagaagaaacaaaaattggCCTAAAAAGCATTTTTAAGCAGAACTA
AGGACCCACCTTACATATGTAAAGTTTTTATTGTGACTCATATCAAGACA
ATACCTATGCAGAGATACGATTTTCTCCTCAAAACTGACGCCCCTTCGCT
CTTTTGCTGAAGATCTTAAACATTTtgagtcgaaaaaaaaaaaattatag
ttaTGTACCTCCATGAAATTTTAGGATTTTTCCAATGGTTCCTAGGGTTC
ATAACAtatcttttttaatattttgggattttgtAACAAAGTTTTGACTG
ATTCTGAAGACTTGAGGTGTTTTGGATATAATTTCGCAAATCCTAAACTT
TGAAAATAGAGTCGCAGGACAGTTTTGGAATCACCCGATTTCATTCAATT
GTATTTCATTATAGGAGATACAATTTTTTTAGTGATCTCAGCCATATTTA
TCTTCTGTTTCTTGGGGGTAAAtatattttgtgaaatttttgagGAATTT
ATAAATTGTATATTTATTATATCAttgtttattattattattaacatTAA
ATTCTACCTTTCCATTTAAAACTATTTTGTATAAAGATGAATACACAAAA
CGacaaattttcttgaaataaaaataataacgtAAATACCACGTgattca
taaaataaaaaacattcatACTAAACAGTAACACACAAAACTAAATTGGT
CGTTGTCGAAATTCAAAAGATTTTCGTTCAAAAGCAAAATGACATTGAAG
CTTTGAAAAAGCTTTATAGTGAGATTTACCTTTGTTCAACTACCTGGTGT
GCCCCAGAAATAAGTTACTTTCTTTTGACTTGATATTGTAGGCaatagaa
aagagatttttcaaagatcatTTCGGAATCTATTCAGAGGAAAGCCTAGT
TTTccccttttttgacatttttaaaaattgacagAATACtggtttttgaa
cataacttttgaaccaattaatacaccaaattttaagttaggctttcctc
tgaatgattccaaaacaatatttgaaaaatctcttcTTGCACAACcggta
caattttgaaaaaattggatttgCTATTAtaaacttttgtcttttttcat
tCTTAAATCTTAGTTCCATACCACAGTTTATAAATTTACCTACCTCACCA
TTCTTTCATAGCagaattatacaaaaatgaaaatgtttctaTCCAAGGAA
TTTCGACGAGTTGTTTCACAATACGGGAACGTTCTCTACAAGGTAATCTA
CCCTTTCCAATGTTTCAAACAGCCAGCATTTATTCGTCTACTGTTCTACA
ATCCAAAACTTGTTATCATGAATATCAGTCATATAACATTTTGTAACATA
TTTTTAATAATATCGATAGTAATCGTTATAATATCGTGGTTGATTATGAT
ACACTTTATTACGACGTTGGTTATGGTGTTGATAATTTTGATGTCTTGGG
ATATTATATCGTTTGAACGGCATTGAAGCATCACTCTCATCCCCACCCAT
GAAAGGCATCGTAAATTTTCGTAGGATATCTACCAATTTGCCTTGATCAA
CATGACCTAAtgttctttgtttactttcattttctcgTTCTTCTTCTCTA
GATACTTCAGTAGGGACAAAAGGAAGTTTCACCAAGTGAGGTTGTTGGCG
AGCTGGCGCCCCACCACCCAACATATTCATCATGAGCGGATTATTGAAAA
ATGCCGCTGGTGACGGCCCGATGATTTCAACGATTGTAGGTCGTTGTATT
TTATGCTGACATTGCGGCCCGGTGAAACCATGGAGACAGCGACACACATT
ATGACCAAGGCATTCACCACCGTTTTGGCATCTTTG Run BLAST on NCBI transcript from alignment at sc0000356:153961..158379+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020409 ID=TCONS_00020409|Name=TCONS_00020409|organism=Clytia hemisphaerica|type=transcript|length=4419bp|location=Sequence derived from alignment at sc0000356:153961..158379+ (Clytia hemisphaerica)
GTTTTTAGcaggttgaaaaaaaattacgttaATTATAACCATGAACACAT
TGCATGTTCTCCTAATTGTTGGTGGAATACTGACTCTGCAAAATGTGTCA
GCTGCTCCTGTAGATCAAACCACTGCAACAACTACAACAAAATCAGAAAT
AACGATACCGCCAAAGAGCACTCAAACAACCAATTCTTCAACTATTGCAG
GTTGGTTGTAAATCTCTTTATTTTAATATTATAATCAGAAGATCTTTTAA
ATAATACTATGCAATTTAATTCATTTTAGTATTCCAATTTACATGAGCTT
TGGAACTCAAAATCAGAACTTTCTGTTAATCATTAAGTTCATAACTCTGT
GATTGTCCGCCTTATTttaaaagacactttgttttttttactataGGGAC
TACAGTAGCACCAAACAATGGAAAAAGACTTAAAACTGATTTCAAACACA
TTTCGATGAGAGCTATGGTTGTAGTAAGTACCGNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCTTTCCAATGAAAtgggaatggttcttttagaatttttcgatttt
gagaaatttagtttcaaagagagaaacttttttgtggcgcacccggtata
tttcacctttttttttaacactGGGCTCTTCCAGGAAAAATCCGTTCATG
TGGGTGTCAAAGAGGTTAAATTGATGATTGTCCATGGGTTTTAACccatg
tccatggggtgaaaaatgaaaatgtccagggataattcattgaaaaaata
gtATATACTCCACCCCCTTTTTTCTGAGCTGTCTAATATTCTCTGCTAAT
CATTTGCATGATATTATTTATACTGATTGCTGTCCTCTTACAAGAGATGG
GAAAATGTACGTTTATTTAGGTACACTAAAATTCATTTACATACAAACAC
CAATGAATTCAGAAAGATAATAGCATATAATTTTGCCATCTTTAATCTGT
GATTTACAGCtacaaaattttttaagaaattattATCTTTGTATTTTTCT
AGGTAGGTGTGATATGTGCAGTTGTCATTCTCTACTTTATCATACGTGGC
GTTTGCTCTCGAAGGCGgcaaaatagaaatagaaagtaaGCTACTGAATA
TTATTATAATGGTAGCAAAATATGTGTGATGCTTCATATTACAAGTCTTA
CATTTACATTTATCTATGATTTTGGGGTTCTAAGCAATGAATAAACACAG
TATAATTTCCCAACGTTGATTTATCTTGatatttcatatatatttttaat
tttgatttagtTTTAAAAAATGCTTCTTCCATAATCGTCTAGTCGAAGCT
ATAGATCTtgtcggagttttttatttttctaaaaaaaacgatgcattgtg
ggattgtttcgggggtaatACAATATGACAATCTCTTaagaattcctcga
gggaattctattgtaatagtaacaatcccacaatgcattgctGTTTTAGG
AAAATCAAAAGCTTGGACAGTGTCTTGTTGTGTATTTGTGATAGCAAACA
ATCATTCATTAAGGGAATTCATTGGTCTAACTATCTATCTAAAATTCTAC
TCCTTGAAGGACTTGAAGCCACAGAGCAgcatttttgactatttttttat
tttttttaagatatgGTATGCTGAGGGAGAACCGTGATGACCGAATGGAG
ATGCGACCTCTATCTGAGGGTGacgatgatgacgatgatgatgacCTCAC
ATTATTTGATGCTTCTCAAAGGAAAAGCAAGCGTTGAAGAAACAAAACTA
AGACTTTAGGTTTATGTTTTTTATCTGAATTCTTTTACgttcatgatttt
tttattgCTCGGGTGTATATTAATAGGAAATTAAGTCTTCCTTCCATGTA
AGGAGGTGTTCTTTACAGTTGTAGCTGGTTTCAATTacagaagaaacaaa
aattggCCTAAAAAGCATTTTTAAGCAGAACTAAGGACCCACCTTACATA
TGTAAAGTTTTTATTGTGACTCATATCAAGACAATACCTATGCAGAGATA
CGATTTTCTCCTCAAAACTGACGCCCCTTCGCTCTTTTGCTGAAGATCTT
AAACATTTtgagtcgaaaaaaaaaaaattatagttaTGTACCTCCATGAA
ATTTTAGGATTTTTCCAATGGTTCCTAGGGTTCATAACAtatctttttta
atattttgggattttgtAACAAAGTTTTGACTGATTCTGAAGACTTGAGG
TGTTTTGGATATAATTTCGCAAATCCTAAACTTTGAAAATAGAGTCGCAG
GACAGTTTTGGAATCACCCGATTTCATTCAATTGTATTTCATTATAGGAG
ATACAATTTTTTTAGTGATCTCAGCCATATTTATCTTCTGTTTCTTGGGG
GTAAAtatattttgtgaaatttttgagGAATTTATAAATTGTATATTTAT
TATATCAttgtttattattattattaacatTAAATTCTACCTTTCCATTT
AAAACTATTTTGTATAAAGATGAATACACAAAACGacaaattttcttgaa
ataaaaataataacgtAAATACCACGTgattcataaaataaaaaacattc
atACTAAACAGTAACACACAAAACTAAATTGGTCGTTGTCGAAATTCAAA
AGATTTTCGTTCAAAAGCAAAATGACATTGAAGCTTTGAAAAAGCTTTAT
AGTGAGATTTACCTTTGTTCAACTACCTGGTGTGCCCCAGAAATAAGTTA
CTTTCTTTTGACTTGATATTGTAGGCaatagaaaagagatttttcaaaga
tcatTTCGGAATCTATTCAGAGGAAAGCCTAGTTTTccccttttttgaca
tttttaaaaattgacagAATACtggtttttgaacataacttttgaaccaa
ttaatacaccaaattttaagttaggctttcctctgaatgattccaaaaca
atatttgaaaaatctcttcTTGCACAACcggtacaattttgaaaaaattg
gatttgCTATTAtaaacttttgtcttttttcattCTTAAATCTTAGTTCC
ATACCACAGTTTATAAATTTACCTACCTCACCATTCTTTCATAGCagaat
tatacaaaaatgaaaatgtttctaTCCAAGGAATTTCGACGAGTTGTTTC
ACAATACGGGAACGTTCTCTACAAGGTAATCTACCCTTTCCAATGTTTCA
AACAGCCAGCATTTATTCGTCTACTGTTCTACAATCCAAAACTTGTTATC
ATGAATATCAGTCATATAACATTTTGTAACATATTTTTAATAATATCGAT
AGTAATCGTTATAATATCGTGGTTGATTATGATACACTTTATTACGACGT
TGGTTATGGTGTTGATAATTTTGATGTCTTGGGATATTATATCGTTTGAA
CGGCATTGAAGCATCACTCTCATCCCCACCCATGAAAGGCATCGTAAATT
TTCGTAGGATATCTACCAATTTGCCTTGATCAACATGACCTAAtgttctt
tgtttactttcattttctcgTTCTTCTTCTCTAGATACTTCAGTAGGGAC
AAAAGGAAGTTTCACCAAGTGAGGTTGTTGGCGAGCTGGCGCCCCACCAC
CCAACATATTCATCATGAGCGGATTATTGAAAAATGCCGCTGGTGACGGC
CCGATGATTTCAACGATTGTAGGTCGTTGTATTTTATGCTGACATTGCGG
CCCGGTGAAACCATGGAGACAGCGACACACATTATGACCAAGGCATTCAC
CACCGTTTTGGCATCTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020409-exon-sc0000356-1491911889:153961..154160 | TCONS_00020409-exon-sc0000356-1491911889:153961..154160 | Clytia hemisphaerica | exon |
| TCONS_00020409-exon-sc0000356-1510915933:153961..154160 | TCONS_00020409-exon-sc0000356-1510915933:153961..154160 | Clytia hemisphaerica | exon |
| TCONS_00020409-exon-sc0000356-1575043694:153961..154160 | TCONS_00020409-exon-sc0000356-1575043694:153961..154160 | Clytia hemisphaerica | exon |
| TCONS_00020409-exon-sc0000356-1491911889:154357..154433 | TCONS_00020409-exon-sc0000356-1491911889:154357..154433 | Clytia hemisphaerica | exon |
| TCONS_00020409-exon-sc0000356-1510915933:154357..154433 | TCONS_00020409-exon-sc0000356-1510915933:154357..154433 | Clytia hemisphaerica | exon |
| TCONS_00020409-exon-sc0000356-1575043694:154357..154433 | TCONS_00020409-exon-sc0000356-1575043694:154357..154433 | Clytia hemisphaerica | exon |
| TCONS_00020409-exon-sc0000356-1491911889:156271..158379 | TCONS_00020409-exon-sc0000356-1491911889:156271..158379 | Clytia hemisphaerica | exon |
| TCONS_00020409-exon-sc0000356-1510915933:156271..158379 | TCONS_00020409-exon-sc0000356-1510915933:156271..158379 | Clytia hemisphaerica | exon |
| TCONS_00020409-exon-sc0000356-1575043694:156271..158379 | TCONS_00020409-exon-sc0000356-1575043694:156271..158379 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000356 | supercontig | sc0000356:153961..158379 + |
Blast
The following BLAST results are available for this feature:
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