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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020076 ID=TCONS_00020076|Name=TCONS_00020076|organism=Clytia hemisphaerica|type=transcript|length=1012bp
TTTTTAGATGAGTGATAAAGTTTTCCTTACAAAATGTCTGTCAAATCATC
TCCAATGGGGTGACAAAAATATTCCCAAGAGTGAGTAAGTTTTCCCTCat
aattaattttataatcAGACTTTCAGCTAACCTATAAAATGTTACTTACA
TGGGGGTTATCAAAAAATGGACAAGCTGGACCTTCAACAAATGACAAAGT
TTTGGTACCACAAAACATCCCAATCAAAAAACAGTATGGTCAAATAATTG
ATATCTCTGCAGGTGGTTTATTTACTGGCGCTCTCACAAATAAGAattat
ttgatttcttttggATGTGGAAAATATGGACGTCTTGGATGTGGAGATGA
AAATGATCATACAAAAGTCATTTCTAACTTAATATCTTCGAATAGCAAAT
TAGCAAAGTTACCAACACCGCCTTCACCAAGCTCCAGTGATGTTAGTCCT
GTCAAAGGAGGTGCATTCCTCTTCTATGTCACCTTAATCTCTGGTCTTGC
TGGCTTTGGTTTGACAGTTGCTAGAGCACGAAAGTCAGCACCCAaagatg
taaataatttgaactCTGAAGGAACACGGTTAGCTTTACGAGCTTTGGGA
TATGGAACAGCTATCAGTGTTACTGGATGTggtttgttgatttttggagT
GGCAAAAGCTCTTGGTGTCTCATCTGCCAAAGAGTTTGGTTTGAAGATGA
AAGGGGTTATGCCATCAAAGGATGGAGAATTTGTTCACAAGTTTGATAAC
TGGCCAACAAAGATTGAAAAGAAGGAAGATGATGGAAAATGGAGAGAAGA
attcgAACTTATTGGAATTGCTTGGAATTGGCGAAACACTTGAGACTAAT
GTTATCAGTTCTGCTGAAAGACTCTACAAACAGTGGAGACCTGGGTGACT
GATTTCAATAATTATTGAACATTGAAGTCACCATAAATTACCATTTTAAA
CCCCATAAAACACTTTTGTACTATATTTTTGTTGTAAATTCTGAAGAAGT
Ataagaagaatc Run BLAST on NCBI protein sequence of TCONS_00020076-protein >TCONS_00020076-protein ID=TCONS_00020076-protein|Name=TCONS_00020076-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
MLLTWGLSKNGQAGPSTNDKVLVPQNIPIKKQYGQIIDISAGGLFTGALT
NKNYLISFGCGKYGRLGCGDENDHTKVISNLISSNSKLAKLPTPPSPSSS
DVSPVKGGAFLFYVTLISGLAGFGLTVARARKSAPKDVNNLNSEGTRLAL
RALGYGTAISVTGCGLLIFGVAKALGVSSAKEFGLKMKGVMPSKDGEFVH
KFDNWPTKIEKKEDDGKWREEFELIGIAWNWRNT Run BLAST on NCBI transcript from alignment at sc0000348:287291..291582- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020076 ID=TCONS_00020076|Name=TCONS_00020076|organism=Clytia hemisphaerica|type=transcript|length=4292bp|location=Sequence derived from alignment at sc0000348:287291..291582- (Clytia hemisphaerica)
TTTTTAGATGAGTGATAAAGTTTTCCTTACAAAATGTCTGTCAAATCATC
TCCAATGGGGTGACAAAAATATTCCCAAGAGTGAGTAAGTTTTCCCTCAT
AATTAATTTTATAATCAGACTTTCAGCTAACCTATAAAATGTTACTTACA
TGGGGGTTATCAAAAAATGGACAAGCTGGACCTTCAACAAATGACAAAGT
TTTGGTACCACAAAACATCCCAATCAAAAAACAGTATGGTCAAATAATTG
ATATCTCTGCAGGTGGTTTATTTACTGGCGCTCTCACAAATAAGAATTAT
TTGATTTCTTTTGGATGTGGAAAATATGGACGTCTTGGATGTGGAGATGA
AAATGATCATACAAAAGTCATTTCTAACTTAATATCTTCGAATAGCAAAT
TAGCAAAGGTAAAAAGAATTCTGAGCGCCATCTAAATATCATTTTCTTAC
CCTGATTTAATTTTAATTTATAGAAGTGTATTTCTCAGTCTATTGACCTC
TATGAAACAATCTTACATCTTTACAATTTATAGATCTCATCATTCCATTC
GTTTGTCAATTTTAGTTTGAATTTCCCTGACCTGATATATATAAAATACT
ATTATGACAGTTAAGTCATAATCAACCAGTTCCAGGAAAGTTTGATATTT
ATTTATTTATTGAAATTCACACTTTTTTATAAGAACACAAGACTGAAAAT
CGGCCAAAACCTAAGAAAAAATTGAGAACAAACTGAGCCTCAGATTTCAT
AAATTGTTAAAACATTACTGATTTTAACAGATTTTAAACTATTTTAAAAG
TTTTAAAGAAACTAAGCGTATTAAGAACAAATTAAGAACATACTAGCCTG
AAAATTTCAAAAAATAAGAGCATCTCTGTTTGAGCCAAAGATTTACTGTT
TCTTATAAAAAAGCTTGTAACTTTATTATTATTTCATAACAAATTCAACA
ATACTGTTATAAGAGGTATTAATATTTTGTACGCATTAAACAGCTCAATC
TTAATAATCAGCATTACTTCACATGATTTAAAGATCATGTTCCTAAAATA
TTAAAAATTTGTTAAACATGTTCTAGATTTCATGTGGATTATGGCATGCT
GCTGCAATTGACAATAATGGTTCCCTGTATATCTGGGGGCACTTAAAAGC
TTGTGGGACATCCTCAAACATGACACAACCCTCACTTGTAGATCTCAATA
AGAATGTTATTGGCATATCATGTGGATTCAACTATACTTTAGCTTGGACA
ATTGAGGGTGTGGCATATTCCTGGGGATCTGGTAATAATGGCGTGCTCGG
ACATGGGGATATGGCCCAACAGAAAAAACCTAAAATAATTGAAGCACTGA
ATGGTCATAAAATTGTTGACATGAGTGCTGGATATTGTCATTGTACTGCA
ATATGTGAAGATGGAAAATTATTTACGTGGGGAAAAGCAGCTTTTGGTTC
ATTAGGAAATGGATCAACTTCTAAATCAGATGTATTAGTACCACAATTAG
TTACTGGTTTTCAAAACGCCAAACAAAGCAGCTGCTCAATGGGTGAGAAT
CATGGTCACACTCTTGTTGTTAATAAGTCAGGCACAGTTTTTGTAACTGG
CGATGGTTATAAAGGTAAACTTGGCCTTGGGGATCAAGAAAGTCACACTA
CCTTTCAAGAGATTCCTGGAGAAAGTTTTGGTGGTGAAGCGATAATGCAA
GTTATGGCTGGTGGCATCAGCAGTGCTGCTTTAAGTAGTAAAGGTCATGT
TTTTACATGGGGATGTGGTAGTGATGGGAGACTTGGACATCCTGAAGCTG
AAGGTCACCGCTATTTGTTTCGGTCTGATCAACCAAGGATTGTTGAAAGC
ATCCAAGATATGAATTGTAAGAAAGTATCAGCTTCTTATTACCATATGGC
AGCACTCATTGATTGAAAAGATACTTATTTTTTATTGATTATCCAATGAA
CATCCATTTGCATGAAATAGTAATGAACTCGATGAATGATTTTTTTTACA
ATCTTAAAAGCTCATTAGTCAAATTATGTCTTTTGAATACACATCATCTA
CTAAATTATTTTTTTTTTAATATGCTAAAAATCTTTTACAATTTATTCGT
GAATCTTAGACATGATTTATACATATTGAACTTCATAAATTTCTGGAATA
TTTGAATATTTTGTACATGAACTTTTCTTTGTAAATTATAGATTTATATA
TGTAAATGAAATTGAAATTAGAAATAGACATGGAATTCTCCAAGGAAGTT
TTTTTTAAAGGAATGTTTTACTAGCTCATTGCTTTCTTGCTAAAATTGAC
TTTCAGTTTCTTATAAGTAATGAAGTAAACAACTCTAATAAAACCTGATT
TTGAATTTCTTGTTTAGAAGAATAATACTTTTTATGTCTGACAATCAGCA
GTTACCAACACCGCCTTCACCAAGCTCCAGTGATGTTAGTCCTGTCAAAG
GAGGTGCATTCCTCTTCTATGTCACCTTAATCTCTGGTCTTGCTGGCTTT
GGTTTGACAGTTGCTAGAGCACGAAAGTCAGCACCCAAAGATGTAAATAA
TTTGAACTCTGAAGGAACACGGTTAGCTTTACGAGCTTTGGGATATGGAA
CAGCTATCAGTGTTACTGGATGTGGTTTGTTGATTTTTGGAGTGGCAAAA
GCTCTTGGTGTCTCATCTGTTAGTATGAACTTTTCAATGCCAAGTTCTTT
AATCACACAACATTGAAATCAGAATAATTCTAAATTTATTTTCATAGTCC
GGGCATCTTTCTGATCTCTCTGTAAAAATACAAGAAAGAAACTACTGTTA
TGTAAGCAGATTATTTCGACGTATCTGTCACGTCACTATCAACTAAATGT
TATAGAATGTTTACAAAGCTGCCTAACCTATAATGTTCACAAATTGGATT
GTTTTATGTCTCTTATAATTTTCAAATATAAATTGATTTTAGGCCAAAGA
GTTTGGTTTGAAGATGAAAGGGGTTATGCCATCAAAGGATGGAGAATTTG
TTCACAAGTTTGATAACTGGCCAACAAAGATTGAAAAGAAGGAAGATGAT
GGAAAATGGAGAGAAGAATTCGGTTAGTGTAAAACGCAGGTCACAGGTCA
CAGGTCGCAGGTCACAGGTCACAGGTCAGTGATGACAGGTTAACTCTAAT
CAATGTCATTGCAGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTTTATAATATCTAAATAGCATGTATTACT
TTTTTGTAATTTAATGCGCTATGTATTGATGTTATGTTATGTATATGTTA
TGATCTTATTTTTTTCCGGTCTGCACTTTGTTGACCTGTGACCTGTGACC
TGCGACCTGTGACCTGTGACCTGCGTTTTACACTAACCGAGAAGAATTCA
AATGAGATGATGATAATGAGATTTTTTCATCATAGAACTTATTGGAATTG
CTTGGAATTGGCGAAACACTTGAGACTAATGTTATCAGTTCTGCTGAAAG
ACTCTACAAACAGTGGAGACCTGGGTGACTGATTTCAATAATTATTGAAC
ATTGAAGTCACCATAAATTACCATTTTAAACCCCATAAAACACTTTTGTA
CTATATTTTTGTTGTAAATTCTGAAGAAGTATAAGAAGAATC Coding sequence (CDS) from alignment at sc0000348:287291..291582- >TCONS_00020076 ID=TCONS_00020076|Name=TCONS_00020076|organism=Clytia hemisphaerica|type=CDS|length=2820bp|location=Sequence derived from alignment at sc0000348:287291..291582- (Clytia hemisphaerica)
AACTTATTGGAATTGCTTGGAATTGGCGAAACACTTGAGCCAAAGAGTTT
GGTTTGAAGATGAAAGGGGTTATGCCATCAAAGGATGGAGAATTTGTTCA
CAAGTTTGATAACTGGCCAACAAAGATTGAAAAGAAGGAAGATGATGGAA
AATGGAGAGAAGAATTCGTTACCAACACCGCCTTCACCAAGCTCCAGTGA
TGTTAGTCCTGTCAAAGGAGGTGCATTCCTCTTCTATGTCACCTTAATCT
CTGGTCTTGCTGGCTTTGGTTTGACAGTTGCTAGAGCACGAAAGTCAGCA
CCCAAAGATGTAAATAATTTGAACTCTGAAGGAACACGGTTAGCTTTACG
AGCTTTGGGATATGGAACAGCTATCAGTGTTACTGGATGTGGTTTGTTGA
TTTTTGGAGTGGCAAAAGCTCTTGGTGTCTCATCTATGTTACTTACATGG
GGGTTATCAAAAAATGGACAAGCTGGACCTTCAACAAATGACAAAGTTTT
GGTACCACAAAACATCCCAATCAAAAAACAGTATGGTCAAATAATTGATA
TCTCTGCAGGTGGTTTATTTACTGGCGCTCTCACAAATAAGAATTATTTG
ATTTCTTTTGGATGTGGAAAATATGGACGTCTTGGATGTGGAGATGAAAA
TGATCATACAAAAGTCATTTCTAACTTAATATCTTCGAATAGCAAATTAG
CAAAGAACTTATTGGAATTGCTTGGAATTGGCGAAACACTTGAGCCAAAG
AGTTTGGTTTGAAGATGAAAGGGGTTATGCCATCAAAGGATGGAGAATTT
GTTCACAAGTTTGATAACTGGCCAACAAAGATTGAAAAGAAGGAAGATGA
TGGAAAATGGAGAGAAGAATTCGTTACCAACACCGCCTTCACCAAGCTCC
AGTGATGTTAGTCCTGTCAAAGGAGGTGCATTCCTCTTCTATGTCACCTT
AATCTCTGGTCTTGCTGGCTTTGGTTTGACAGTTGCTAGAGCACGAAAGT
CAGCACCCAAAGATGTAAATAATTTGAACTCTGAAGGAACACGGTTAGCT
TTACGAGCTTTGGGATATGGAACAGCTATCAGTGTTACTGGATGTGGTTT
GTTGATTTTTGGAGTGGCAAAAGCTCTTGGTGTCTCATCTATGTTACTTA
CATGGGGGTTATCAAAAAATGGACAAGCTGGACCTTCAACAAATGACAAA
GTTTTGGTACCACAAAACATCCCAATCAAAAAACAGTATGGTCAAATAAT
TGATATCTCTGCAGGTGGTTTATTTACTGGCGCTCTCACAAATAAGAATT
ATTTGATTTCTTTTGGATGTGGAAAATATGGACGTCTTGGATGTGGAGAT
GAAAATGATCATACAAAAGTCATTTCTAACTTAATATCTTCGAATAGCAA
ATTAGCAAAGAACTTATTGGAATTGCTTGGAATTGGCGAAACACTTGAGC
CAAAGAGTTTGGTTTGAAGATGAAAGGGGTTATGCCATCAAAGGATGGAG
AATTTGTTCACAAGTTTGATAACTGGCCAACAAAGATTGAAAAGAAGGAA
GATGATGGAAAATGGAGAGAAGAATTCGTTACCAACACCGCCTTCACCAA
GCTCCAGTGATGTTAGTCCTGTCAAAGGAGGTGCATTCCTCTTCTATGTC
ACCTTAATCTCTGGTCTTGCTGGCTTTGGTTTGACAGTTGCTAGAGCACG
AAAGTCAGCACCCAAAGATGTAAATAATTTGAACTCTGAAGGAACACGGT
TAGCTTTACGAGCTTTGGGATATGGAACAGCTATCAGTGTTACTGGATGT
GGTTTGTTGATTTTTGGAGTGGCAAAAGCTCTTGGTGTCTCATCTATGTT
ACTTACATGGGGGTTATCAAAAAATGGACAAGCTGGACCTTCAACAAATG
ACAAAGTTTTGGTACCACAAAACATCCCAATCAAAAAACAGTATGGTCAA
ATAATTGATATCTCTGCAGGTGGTTTATTTACTGGCGCTCTCACAAATAA
GAATTATTTGATTTCTTTTGGATGTGGAAAATATGGACGTCTTGGATGTG
GAGATGAAAATGATCATACAAAAGTCATTTCTAACTTAATATCTTCGAAT
AGCAAATTAGCAAAGAACTTATTGGAATTGCTTGGAATTGGCGAAACACT
TGAGCCAAAGAGTTTGGTTTGAAGATGAAAGGGGTTATGCCATCAAAGGA
TGGAGAATTTGTTCACAAGTTTGATAACTGGCCAACAAAGATTGAAAAGA
AGGAAGATGATGGAAAATGGAGAGAAGAATTCGTTACCAACACCGCCTTC
ACCAAGCTCCAGTGATGTTAGTCCTGTCAAAGGAGGTGCATTCCTCTTCT
ATGTCACCTTAATCTCTGGTCTTGCTGGCTTTGGTTTGACAGTTGCTAGA
GCACGAAAGTCAGCACCCAAAGATGTAAATAATTTGAACTCTGAAGGAAC
ACGGTTAGCTTTACGAGCTTTGGGATATGGAACAGCTATCAGTGTTACTG
GATGTGGTTTGTTGATTTTTGGAGTGGCAAAAGCTCTTGGTGTCTCATCT
ATGTTACTTACATGGGGGTTATCAAAAAATGGACAAGCTGGACCTTCAAC
AAATGACAAAGTTTTGGTACCACAAAACATCCCAATCAAAAAACAGTATG
GTCAAATAATTGATATCTCTGCAGGTGGTTTATTTACTGGCGCTCTCACA
AATAAGAATTATTTGATTTCTTTTGGATGTGGAAAATATGGACGTCTTGG
ATGTGGAGATGAAAATGATCATACAAAAGTCATTTCTAACTTAATATCTT
CGAATAGCAAATTAGCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020076-exon-sc0000348-1575043694:291175..291582 | TCONS_00020076-exon-sc0000348-1575043694:291175..291582 | Clytia hemisphaerica | exon |
| TCONS_00020076-exon-sc0000348-1575043694:288915..289181 | TCONS_00020076-exon-sc0000348-1575043694:288915..289181 | Clytia hemisphaerica | exon |
| TCONS_00020076-exon-sc0000348-1575043694:288511..288640 | TCONS_00020076-exon-sc0000348-1575043694:288511..288640 | Clytia hemisphaerica | exon |
| TCONS_00020076-exon-sc0000348-1575043694:287291..287497 | TCONS_00020076-exon-sc0000348-1575043694:287291..287497 | Clytia hemisphaerica | exon |
| TCONS_00020076-exon-sc0000348-1510915933:291175..291582 | TCONS_00020076-exon-sc0000348-1510915933:291175..291582 | Clytia hemisphaerica | exon |
| TCONS_00020076-exon-sc0000348-1510915933:288915..289181 | TCONS_00020076-exon-sc0000348-1510915933:288915..289181 | Clytia hemisphaerica | exon |
| TCONS_00020076-exon-sc0000348-1510915933:288511..288640 | TCONS_00020076-exon-sc0000348-1510915933:288511..288640 | Clytia hemisphaerica | exon |
| TCONS_00020076-exon-sc0000348-1510915933:287291..287497 | TCONS_00020076-exon-sc0000348-1510915933:287291..287497 | Clytia hemisphaerica | exon |
| TCONS_00020076-exon-sc0000348-1491911889:291175..291582 | TCONS_00020076-exon-sc0000348-1491911889:291175..291582 | Clytia hemisphaerica | exon |
| TCONS_00020076-exon-sc0000348-1491911889:288915..289181 | TCONS_00020076-exon-sc0000348-1491911889:288915..289181 | Clytia hemisphaerica | exon |
| TCONS_00020076-exon-sc0000348-1491911889:288511..288640 | TCONS_00020076-exon-sc0000348-1491911889:288511..288640 | Clytia hemisphaerica | exon |
| TCONS_00020076-exon-sc0000348-1491911889:287291..287497 | TCONS_00020076-exon-sc0000348-1491911889:287291..287497 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000348 | supercontig | sc0000348:287291..291582 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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