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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020068 ID=TCONS_00020068|Name=TCONS_00020068|organism=Clytia hemisphaerica|type=transcript|length=2274bpRun BLAST on NCBI protein sequence of TCONS_00020068-protein >TCONS_00020068-protein ID=TCONS_00020068-protein|Name=TCONS_00020068-protein|organism=Clytia hemisphaerica|type=polypeptide|length=482bp MTSNDLFCINDYDCIGFDMDHTMVQYKLPNTFRLQYQCVVDFLVNEKSYCRun BLAST on NCBI transcript from alignment at sc0000348:252210..277086- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020068 ID=TCONS_00020068|Name=TCONS_00020068|organism=Clytia hemisphaerica|type=transcript|length=24877bp|location=Sequence derived from alignment at sc0000348:252210..277086- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000348:252210..277086- >TCONS_00020068 ID=TCONS_00020068|Name=TCONS_00020068|organism=Clytia hemisphaerica|type=CDS|length=18837bp|location=Sequence derived from alignment at sc0000348:252210..277086- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00020068 vs. Swiss-Prot (Human)
Match: NT5D1 (5'-nucleotidase domain-containing protein 1 OS=Homo sapiens GN=NT5DC1 PE=1 SV=1) HSP 1 Score: 224.942 bits (572), Expect = 9.739e-65 Identity = 154/476 (32.35%), Postives = 241/476 (50.63%), Query Frame = 3
Query: 111 FCINDYDCIGFDMDHTMVQYKLPNTFRLQYQCVVDFLVNEKSYCPKTFNM--ENYEKFEDFSQRGIIFDIVKGNFVKLDKNGVVVSCTHGMRECDAEETMSYYGEDRVWPLFQTLKEKVYNAEGYWIIENFFLMPVCSIMGQMVEEADKRNDGKHLSTYKPLYVHMIEALALSFDNKSFRKDIGGFFPAFKRNQEKYIKKIPQSVVDWIRSLRKAGKVVALITDSYTDFASHLMEYALGPDWTNDFDFIVTHANKPNFFTPSYKDRCFVNNDANGDESTEVKDTLKPHTIYSLGNAWKFEETLKAYTGKDEVKVVYFGDSMKSDVFPPKHLKGWDTXXXXXXXXXXXXHFHKNNQSIYHQAKRXXXXXXXXXXXXXXASSQWGSFFTHPQSSHQDGTTSNGKQNGSTSNDEVHEINTFWGDIIRRYSDLAIPLLDYLAETSVTEKFPKFTDSQ---FGFFPSAPRSILKDHCLDEK 1523
F + D +GFD+DHT+ +Y LP + L Y FLV EK Y + N+ E++ DF +G+ D+ GNF+KL NG V+ +HG + E YG+ + W F + + Y+ +N+F +P + ++V+ K N+G+ + + ++ A+ ++ +F+++ G +FP KR+ +Y+ P+SV W+R L+ AGK++ LIT S++D+ L EY LG D+T+ FD ++T+A KP FF+ R F DE E +L YS GNA E LK TGK E KVVYFGDSM SD+FP +H W+TV +LEEL +E + + ++ K + L +S +WGSFF + N E + T+ I YS +AIP ++ +AE + KF +F+ S G++P+ P + D L K
Sbjct: 5 FSLAACDVVGFDLDHTLCRYNLPESAPLIYNSFAQFLVKEKGYDKELLNVTPEDW----DFCCKGLALDLEDGNFLKLANNGTVLRASHGTKMMTPEVLAEAYGK-KEWKHFLSDTGMACRSGKYYFYDNYFDLPGALLCARVVDYLTKLNNGQKTFDF---WKDIVAAIQHNYKMSAFKENCGIYFPEIKRDPGRYLHSCPESVKKWLRQLKNAGKILLLITSSHSDYCRLLCEYILGNDFTDLFDIVITNALKPGFFSHLPSQRPF--RTLENDEEQEALPSLDKPGWYSQGNAVHLYELLKKMTGKPEPKVVYFGDSMHSDIFPARHYSNWETVLILEELRGDEGTRSQRPEE-SEPLEKKGKYEGPKAKPLNTSSKKWGSFFIDSVLGLE--------------NTEDSLVYTWSCKRISTYSTIAIPSIEAIAELPLDYKFTRFSSSNSKTAGYYPNPPLVLSSDETLISK 455 The following BLAST results are available for this feature:
BLAST of TCONS_00020068 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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