TCONS_00019742 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019742
Unique NameTCONS_00019742
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1238

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019742 ID=TCONS_00019742|Name=TCONS_00019742|organism=Clytia hemisphaerica|type=transcript|length=1238bp
AAGAATTTGAAAATGCTGTCTCCGAAAAATAATACGATAAATCTTCCACC
AATGAAAAAGCGGTTGTATTTATCACGAAGTATGACCACTTTGAGAAAAA
TTGCGGACCCACCGCCATGGCAACATGCCAAAGACCATGAGAAATATTAT
CTGACGCTTTTTGACATGCGCattaatggtttgaaagaaGCATGGTATCG
AGAAGAGATGCTGAGATTGAGGAAACAACATACCATAGCGTCCGATTCTC
CATCCAATATCTTTAATGAAAAGgtACCACAAGTTTGCGTGACTCTTTCG
GACGATTCTGATAATTCGGACACGGAAGACCGTCATCCATTTGTTGTCGA
AAAGGAACATGAACGACTACATGGTGAAACAGAAGAGGACGCAGAGATTC
GTAAAAATGCAATTGCTATGCGATCACGTCGAAGGAGTTCTGTGGTTCAA
ATACCAACAGCCAGTATACAAATGGATTTACACACTATCTACTTAGAAAG
TATCAATGGAACCAAAAAGAAAGggaaatcgTTTGAAGAACCGAAAGCGT
CGAACaaaaaacttcagaaaaatGCAGCTGTTTACAGCTCTTTCGAGGGA
GAAGACACGGAGAAAAAAGGAAGATTCGCCCTACTAAAACAAAAGTTTGT
AAGTAAACTAATAATTAATTACAAAATTGTACATTTTGGGAAAAATCTGC
TAGTGCTTATTTTCGTTTGACGGTCAATGCACTCCATTGCAAACATTTTG
AACTCTGTGTAATCAAGGTTCTGATCGCCAGAAACGTCAAACTCGGAGAA
AATCTCACGAATAGAGTCGCCTTGTAGATTGAAAAGAAAACCAAAGTTTT
CAAATTCTTCAGCTGATATATTCCCTGATTTATCTTCGTCTAAAAGGTCG
AAAACTGTTCGTGAATGGCGGtaaatgaaatgtttttccTCTCGGTCTTG
AACTGAGATTACGATACAAATCAAAAGATAAAACTCATTGAAATCAATAC
TACCCGATCCATCCACGTCCAACATGTCAAAAACCTTGTAAATTTGTGTT
GTGGTCAAATCTGTGATTGATTTCAAGAAAGCACAGAACTGAACATCGTT
TAAAGCATTGTCCCCATGCACATCGAGTagtgtgaaaaaatcataaatca
cttTCAAATTTCTTCCTGATAATAAACTATagtttttgtcaagatgtata
TACTGCAAGAGTTTTGATGTGACCTTCATCTTTTTGTN
Run BLAST on NCBI

transcript from alignment at sc0000335:169293..183146-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019742 ID=TCONS_00019742|Name=TCONS_00019742|organism=Clytia hemisphaerica|type=transcript|length=13854bp|location=Sequence derived from alignment at sc0000335:169293..183146- (Clytia hemisphaerica)
AAGAATTTGAAAATGCTGTCTCCGAAAAATAATACGATAAATCTTCCACC
AATGAAAAAGCGGTTGTATTTATCACGAAGTATGACCACTTTGAGAAAAA
TTGCGGACCCACCGCCATGGCAACATGCCAAAGACCATGAGAAATATTAT
CTGACGCTTTTTGACATGCGCATTAATGGTTTGAAAGAAGCATGGTATCG
AGAAGAGGTAGGAATGCTTGGTTTTTATTGGTAGATTTTAGCCATGTTTT
CTAAAAGGTGAAATTCTTTTTCATCTTGAAGGGTTTTCTGTTGTTTTGTT
TTTGTATTGATTTACTCGATACTAAAGACTAAATCACAGTCTAACCCTAT
TCAATATCTTAAGGCCGGCCTCCACTTGTGCGCGCTTCGATCGCACTTTT
TCGAGCAAAGCTTCCACGCTATTGGTCAAAAGAAAAATGAAGCAATTCCA
TTGGCGCGATCTGACGTAACGGTTAAAAAAAGTTGAAATGTGTTCAATTT
TTTTTCGAGTGCGCGCTACATTTTTATGACGTAATCTTTTTTCCAAGCAA
AAAAGATTGAAGCCAAAAAGTTCGATCGCAGCGCGCGCAAGTGGAGACCG
GCCTTTACCCATTCAGCTTTCATGAAAAAGTCTCGTTCTTAAACCTTGGT
TATTCCTCTAGCTTCAAAGTTTCTAATGTTTTTTAATTTCAAACGTCTGT
TTTCAAAAACTTTTCTGTGAAGGGTAAAAAACAGGGTGGTTTTGGGCTCG
ACATCCTTAGGTACAGATCTGTGGTACCTCAATTTGTCGTTACAGCTGTG
TAGCCCCAGAGAACTTGGATTAGTAGCTATAGAAGATAAGTTACATAAGA
AAGTTTCGGATCTCAAACAATGCTGATTTTTTCCGGGGTTAAGAAATCTA
CGACCTTTCGTTCACTGCTACCGCTGAAAATTCATACCAAATTGTTAACT
GTTCAAATTCTTTGGGTAATTTTAATACATTATCGCTGAATATTGAATTT
CCAGACTTTCTGTTTACTAGTGTGAATTAAGTTTCAGATTAATATGCACC
TAAGTGACAAGTTATAGTCTTCCTTATTAACAATAAGCATAATCCTATTT
TTCCGCAATCCTAAAATTTTTCTTTTTTAATTACTCGGTATATAAAAGGG
ACAAATCTTTATGGGCTGCAGATATACCAAGAAATCGTTCTTAGTATAGT
ATGTCTGTTATGGTTCTTTTAAATGAAAGCTGATCAGTTCTACCGAGTGG
CCATTAAGCTATTGCTCGACGGTAGAGCAAATGCCCGCGAATGGCATGAT
TGTGAGTTCGGTTGTAAGTATCACCAGACCCGTTAATATTCAAAGGATTC
TGGTGGCTGGTCAGAAGACAACTACAGGCTATCGTCAGTAGCGTGGTGGG
TCGACTAAAACATGCGCAAACTAGGGAGCCAATTTTAGAAGAATTTAGTT
TTTGGCGCCCCCTATGAGAAGTAAATATCTTTTTAAAAGTTACGCGAGCA
AAGCGAACACGAAAAATTTGGGGTATTTTCACTCTTTTTGGCCGAAAACT
GCCATATCTAAGGTGTAAAAGAGCAAAGGGGCGCTAAAATTAGTAAACAG
AGGCGTCCTTTTGCTCCCATATTATTTCGGCCGCTGGGGGGGGGCACCAC
GCTATTGGCTATCGTATTCACTTGGTTGCGATATGCAAAGAGCTAAATTT
ATGATAGGATATTATTTCAATATTTGGTTGTGAAATAATCTCAGTTTAGG
GGGGCTTGGAAAGTTGTTTTGCATAATTTATTTTTACCAGGACTGTGACT
ACATACGTAATTTAACCTGGATTATAGCATAGAATAGAGATTTTTCAGAT
CAAGAAAAACTTTACACACCAGGACTGAGTTCTGTTGATAATTAACCTGC
TGTGTTTTAATTGGATATCGAGAGGCTTAGATCCAGGCGTGATACTTCTC
TAGAAAATACGATACTGACTGAAAGATGATAAATTTTCTATTCCTTGAAA
AAAAAGCTTTTTTTACTGGCTTTTTTCGATAAAATGTGATTTCTTTTTCT
CGCAAGGAGTATATTTTCTGAAATTTTCACGTCTTTTTGTCATGAAAAGA
AAAATGAAAGATGAAAATATTAAACAGTTGAAGAATGAAACGAATAATAA
TAATAATGCAAATTAAATTTTGCAATGAATTTTATGAGTTATTACATTGT
CAAAATAAAAGTAGAGATTTTAGTATATTTTTAGTGGGTGAAGTAGCTGA
CGAGGTTTAGGGTCATCTCTCTATAAAGGGGTTAGTAATCTGAAATTGTT
GTAACATGAGAGTGTGTACCACCCATCCAAATCCTGGTATTAGAGCTTAC
ACACAACGGTCTTGTTGCCTTAACAGAATCAATTGCAAGAAAGGATATTT
TCGATCTTAAATCTCCTAGTCTTATATGGAATTCGTATTTCTCTCGGAAA
TTTTTATATCCGTAACACACGGCTTTATGTCGTCAGTTTTCCGTACGTCT
TGGACGTTGTATTATTAGGTGCCAGGAATTCCCAGGGTATTCCCATATCT
TCACTGTATCATAAAATTCCAACGTTCTGAGTCAACTTTCTCCGCCCATT
TTTACGTTTTAAAAGCGATTCGATACTTCTATCATTTTAAGTAGTATAGC
TTTGTAATGATTGGATTGAAATAACACCCATTTAAGTAGTTGCCTTGCGT
AACTAAGGTATTCTTTGACTTTAGTAATAACTCATAAAATACATCATTTC
CAAGCAAATATTTACCCAGACGTGGGACTCTTTCTTTCACAAAGAAATTT
TAACTGTTAATGAAATTCTCTCCTTGCAACATTATATGAAAATGGTTTTC
GTGTATTGCTTGAGTGATGTTTTGTAATTCAGAGAATATTTTCATGATAC
CTTAAGGGAATTTTCGCGGAACTTATTTTCGCGGTGTGAGTGTACTAATT
TGGCACATTTTACGGCACTTTTTGTTAAAATTCTTTCATATTCTTAGGGG
TTTTGAGGATTTTTAGTAAAATTCGCATTTCAAGGAACTAATTTTCGCGG
TAGACACCCAACAACGCGAAAATTAATCTCTTAAGGTAATATTATTAGCT
ATCTTAAACAAAAAAAGTGAAAGTGATTTTAACGCATAAAAGGAAGAACC
AAACTTATGATTTTGAGAATATTTAANAAGTGAAAGTGATTTTAACGCAT
AAAAGGAAGAACCAAACTTATGATTTTGAAAATATTTAACATGAGTCGTT
TATATGAACCGCTTTTCGCACATTTCCCGAATACGTATTCACCGGGTTTA
ATCTTTCTATCGGATGGTGGTCCGAAGTTACAACGAAAGAATGCATTACG
TCATGGATACAGACCAGGTTGTCTTGGCAACAGGCTTTGTAAGCAAGTGG
TTGACTTTGTGATTTCACCGATGATCACATCCAGTTTATCCTTGGATAGT
CTAGACACTGATGAATATAAAGAGGTGATTGACTTTTTATCCATGGAGGG
CTCCCGATCTTAAAAAGTTACTCTTTATTTTGCAGTGTAGTTTCGACCAA
AAATTGTGAATAATGATATGCACCATTGCAATGTCTTCGACGGACCCAGC
ATCTCATTGGTTGAAGGTGACGTATTGACTGATTTTACGTCACTTACAAC
CAATCAACTGTTGGGTCCCTGATATAATGTCAGAAGACATTGCAATGGTG
CATATCATATCACAAATTATACACTTTCATGAATTTCAGAAAACTTACCC
TTGTGGACCACAGAATCGGTTTAATCCTTGGTTTCATTTACCGGGACTCA
TATTTGGGGTCTCGGGGGGTCTTTAAGATGTTGCTCTTGAGTCTGAAACT
TTTGATATCGAGGTGTAAGATATTTAAACATTTAAGTTTATAGTTCCAAA
AAAATAAAATTTTGTTTTCTGCAAGATGTTAAAAAAAGTCAAGATAATGC
CTGTTTTCTACCAAGGGTTTACTCTATTTACCAAATATGGTAATAAAATA
ATGTCCATTGTCGTGACATCAAATTGTGGTTCCTTTGACCTCGAAAGATA
TCTCTTGTCATCACATAGCTTGTTTCTTTGTTATACGTAAATTCGTGGTC
CTGAGCGCTTGTTTGTTCAAGTGTTTTGCTAAAAAGATACCATAGGTTTT
TTGAGGTATTTCACTCGATGCAGGAAAACAGATTAGATTAGGGCTGTATC
TGCGGTTCTGTGTAAACACTTTAAAAATGCTGGTCTTAAGGAATTTGTAC
AATTTTTTTTGTGCCCAAAATTTAATTAGAACGCGAAAAGAGAAGAGGGG
CTTACTAAGTTTTGATATCAGTTTGTTACATAAATGATTGTTAGCTATGC
ATGACGCTTCTATAATTGTCGAGAATTTAATACGCTTTCGATGGAATTTT
GCTCAAAAGGTATAGCTCATTTTATTTTTATGAAACTGCTGTCGTGAAAT
TATTTCGTACTGATATTTCTTATGACTAGCTAAACGGTTGATTCTTGCAC
TACCATAAAGACAGGTCTCTACTTTCATCAGAAATGAATATAAAGAAATT
TTAAACGTTTTTGTAAGGTCATTGGTCAGAAACAATTCCATTTGGCAAAC
CTGACGTAACGGTTTGAAAAAGTTGAACTTCTTTCAACTTTTTATTTTTT
AGCTCGAAACTTTTTTAATGACGTTATCTTTTCTTCAGGCAAAACGATTG
TGACAAATAGTTTTCGCTTATTTTTGCGCGAAAGTGGAGACCGGCCTTAA
TTTTCTCCAAAGTCAGGAATTGCAAAGTGTCCATTTGTATTTGAAACAGA
CGTGCTGTACACATAACGGACATAATGCTAATCTTAGAAAAGGATTACAA
TTAGAGTCTTAGCAATCTGGTGTGTGAAAAATATTTTGTTGTCCAAAACG
ATTTCATTTGACATTTTTTCGACATTCCTGTTGGTGTTGAGGGTCGTTCT
TTTGATTTTTTTGCATCCTTTCGATTAATACTGTTCAATGCAAGGTGAAG
TTCTATAGTCTACTAACCTCAAATCCTGAGTGTTTTGAGGTAAGAAATGG
CTCACTGCACTGACAAGTAGAAAAGGGTGGCTGTGTTTTTAGTTTTGATT
TTGATTGATTTTGTTCCGTAAATATCAATGGAAAGGCTAATTTGCAGACT
TTTTTACCATTGTGTTGAGTGCAGCGAAGTCTTGCCTGAAAGTTCATTTA
ACTTCAAAATTGAACACAATACTCATTACAAAATAACAAGAAACAAATTG
TTGAAGTGTCTTTATCAGCTCTCGGAAAATCCTACTCCACCTACTCGCCA
TTAATTAACATTTCCGAGAAGCAAAAATATATCGCTCTTCATTACTTCAT
TTTTGGATTTTATCCAAATTGAGTAGGAGGAAGTTTAGGTTCTTTTTGGT
AAGATAGATGGCCTGAAAAGCGAATACGGATTACAACTCATGTATGGGGA
AATGATCTGCAAAGAATTGATTTCACTTGGGATCGTAGGAAAACTAGTAA
AGAAGTAAAAAGGTCTCTGATAAATTTCACTTGACTTGGAATTGATGGCT
CTGAAAAATATTCAGTCTCCATAAAATCGGAAAATCTAAAAATTTGACTC
AAGCTAGAAATCGAGCCTGGTAGAGCATCCGTTCAAAATTTCTTGAGCTT
CACAGTGTAAAAAGTTAGAAAACGCTCTCCCTTTCCCTTGAAACTTAACA
AGATTTTGCACCCCTAACATTACAATACTATTGTTTTCTTACAATAAATT
CTAATTTTTCATGCTTCCATATTATAGTTAAATAGTATTATTTGTGAACA
CAAACCATCATTTATTACCCATTAATTCTTTTGTTTTGTATTTCAGATGC
TGAGATTGAGGAAACAACATACCATAGCGTCCGATTCTCCATCCAATATC
TTTAATGAAAAGGTAGTTAATCATATGATTCAAACTTCTTTCTTTTCTAA
TTTTTGTATTTGGCCTTTTGTTACGAGTCTGCTAAATCGCGTGCCACGCG
TGCCAGCGTGCTATGCGTGCCAGCGTGCCAACGTGCCATGCGTGCCTGCG
TGCCAACGTGCCTTGGCGTGCCAACGTGCCAGCGTGCCAACGTGCCATGG
CGTGCCAACGTGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTTAAATT
ATGTAAATAATGGCATTATCACAAAATATGAGGTGTATACACCAATTTAC
AACAAGATGTTTTCTCATGCTCAATAGGATGCTGGCGGTGCAAAGGGATA
TAGATTGTCATGCAATGAAAACATTAAATGCTCCAAGAGAGCTGTTTTAG
AGATATGAAAATAGTAGTACTTTTATTACTGTATTATTTTATTATTTTCA
TTTTTATGTGAACAGCATTATATAACTTTAAAAGTTTTAAAGAAGATAAA
CTTGATTCTTCCACGCGAAAGGCAGTAGTCTACCTGGCATTTTCTTGACA
AAGCAAAATCTCATTTTCGGCTTTATATATAATATATGTTTAGATACTTA
GCGTTATGCTTTTTTCTTTAGCATATTGTAATTTAAGCTGAGGCTGGACA
TATGCTTAATATGCTTAATTTTCTATTGTTCTAAAACAATAAATCCATTG
TATTCGAGCCAGAATCCCAGCTTTGTTATGCTTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTTTTGGACTTGGCTATTTTACAAAC
ATGAGAAATAATCATATTGAGAGTTTTGGACTTTTGAGTTTCACCCTGAT
ATTCTTATAGAAGATATTCTTATATAAAAATGCGTTTATCATAAATGATC
CAAACAACGTTAAACTACCTCCAGATGTTATATCATTTTCAGTCGTTTTG
AGCAGTTTGGAGTCTTGTACAGTAGAGTAAACAAGGATGAAGCAACATTG
GCTTACTTTCAGGTACCTACCGGGGGTTGGAAAAGANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTAATAAAATTTTCGAAAAATTAATTATAGCGCCCA
GGCTATTAGGTATCTGAGAGTAGATTTAACGACATAGTAATGATGTTTTT
ATGTCACGAATAGGTAAGTGTTTTGTCGTTAAAATCTACTCTCATACGCA
GATCTTTTTTCACCCCTGTCTACGCTACTGTTCTAAAGAATTGAAAAAGC
TTTTCATTCTGAAACCTTTTGAAAAAGTTTTTTTCTGGAATTTTTTTTTT
TGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNACGCTGGCACGCCAAGACAGTTGGCAC
GAAGGCACGCATGGCACGCTGGCACGCTTAAAAACCGATGGCACGCTGGC
ACGCGTGGCACGCGATTTAGCAGACTCATATGTGAGTGATCGAAGGTTTG
GTAATGCTGCTAGTGCCTTCAAACTTACGTAATCGTGGAGTGTCAAACCA
TGAACTTATAAACGACTGGACATCTATCTTTTATTGTCTCTTTGAAGCGA
GCTTCGTTGCCGCTAGTATTTCAAAATTTGTATGAAAAATCCGACAATAT
TCCGTCATAATTTTAATTCTTTGAATTATTTAGGTAAAAGAATTGACAGA
GCTTGAACATTACTCCTAATGCACAAAAAAATTATTCTTAAATTTTTTCA
CAAGTTAGCAATATATTTCATCAACATTTTTCAACTCCGAAATGCAGAGN
TTATTCTTAAATTTTTTCACAAGTTAGCAATATATTTCATCAACATTTTT
CAACTCCGAAATGCAGAGTTTCAAATGCGTGTATACTTTTGAATCCCTTT
TGTCACTCCAATAATTTTTTTTATGACTTGAAAAAAATAGCTTGCCAAAG
TTGAGAGCCTATGTTATAAGAATATCAAAATTAGATTGCGACACTCTCTA
AAATTATTCGACACTTTTAAGTCAACATTTAGAAATATTAGCCGGAGTTT
TGACAAGCTGACGATGATTTTGCCTCTGTTATCTTTGTTATGATATAGAT
AAAAGACTTGAGAAAAGTAGAGCAACAGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTCCCAAGTGGTATA
TCATCAAAATTTATTGTTTCATTTTATGCTTTTAACGAGGCGGCAACGAA
GCTAGCAGCCCTTTCTACAAAAAAACAAAGGAGATAGATGTCCAGTCGTT
TATATGTTCATGGTCAAACCAAAGCGGTTTTGTTGATGGAATTGTGTTCA
TAACGAGACTGCCCTGCTTCACCTTGAGGTTAAATCATCCACCAGTAATC
AAATCTTTTGGCCAGTATAAAAAAAATCGTCCAAGAAAAAAGATCAGAAT
GGATTTGAATGATTTCACTTTTAATATTTTCTTTGTTGGGTTCGTTAAGG
CAATCTCGTGCGTGTGTCCTAATTTTAGGTTTTGACGAATGACTACCGAA
AATAGCTGAATAAAGCTTTTTCTAGTTTTTGCGGTGAATTTTCCTTACTA
AGAATTTCTGGGTATCGATGCTCGGATAATGACGTCTGATTTGTGTACCT
TTGCGTCATTTTGTATGCGGCAGACTGATGACTCAAATGACAGTAATTAA
TATGTCTCTGACTTCAATGAGAACTAATCAGACCCAATTAAAATCCAGTT
CCAGTAATTATTTCCGCTTACTGAGCGAAAATTTGGTTTTGCATGATTTT
AAACATGAGATTGGTGTTTTTAGAGTATAAAAAAATGCTCTTTGTCATGA
GTAGTTAGTTGGCTTTACACTGTTTTAGGAAGGGTAGCGTTGGTATGCTT
TGTATATCAGTTTTCAAGTGGCTACTTGAGATTTTGTTGAGTTACTACGT
AGATTGGATGTCTCCGTGTGTTTCTGTCCGTGTCTGGGTATTCTCTATTG
TTTTCTTATTATGATATAATCTTTCAGTGAAACTAATACCTAAACTTTTG
TCAATTATGATCACAGAATTTGAAAGGTTTCCACTGAAACCATCATATTC
AAATTTCAATCGTCAGTAGTTTATAAAGTGATGCCCTTCTGTTGACGACA
GTTTTTCAAAGTTGTTACGTAAAAATATTTTTCCTTAAATTATCCGGATA
TTGATATCAATAAACCACATCGCTCACTTGATAAAAAAGTGTAATAATTT
TATGATTTGATAGCGGTTTAAAACATTATAACAAAAGTGATAGACGCACA
AACATTGACTGGAGCTTCGTTTGTTTGTAAATTTTGGTAGATTGGTAGAT
TTTGTTTTGTTTGAAGACACGATGGTGTTTGAGGAAAGAGGATTGCGATC
GGCAGGTGAATGGGTTATCGGTGCATTGAAGACGGTTAATGAAACTATGT
CACCAAGGTCCAGACGTCGTGCTTTTAGACGGCAAATGAAAACGGTACTT
AGAAACGATTTCGTTGCTAAGGATTTTTACATGAAATTCCAATCGTTTTT
TATCAAACCTTTCCCGTTCCCGGTTAATTCATTTGTTTTATATTTACACC
CCTGTGTCACAGACCTGTTGGACCCACACCCCGTTGGAAAGTTTGGAAGT
TTGGGAAATTGTCATTTGAAATTCAATGGAAAAAATTGCTCTCCAAAACC
ATCTGAGTTGGATTTTATGAGCTGGGAAGTGGGTTCTTGTCCAAGAAAAA
ACACTATTTCGTGCGGTGTGATCTGCAGAAGGCTGGATGTCATTTGTGAC
CATGTTTGATTTTCTNTAACGTCTGGATGTCATTTGTACCATGTTTGATC
TACCAACAACTGTTTAAAACTTTTTCCTTTTTTCACCAGGTACCACAAGT
TTGCGTGACTCTTTCGGACGATTCTGATAATTCGGACACGGAAGACCGTC
ATCCATTTGTTGTCGAAAAGGAACATGAACGACTACATGTAAGAGATCCA
CTCTTTATTTTATTTCAACATGTCTCGATGAAGTCTGAAAAACAACCTTT
GCCTTTGTAAACACCTCCGCCACTGCTTACTCCGCCCCGGGCTAACCACC
GTTTTCAAATATATCCCGCCTCCTGAACTATTCTCTTTTTAGCGATCTTG
TGTAGACCCCTTGTATTCACCCCAAAGAAATCATTTTTGGCCGCGTACCA
TGGTGTTGTTTCTTCTAAGATTAGCTGGCAGTATAACAATATAATTCAAT
ATAAAGATCATCTTGGTCAAATATTCACTTTGATCTATGAGTTTTTTTAT
GATGTTTATGATTTTTTGTCTTTAGGGTGAAACAGAAGAGGACGCAGAGA
TTCGTAAAAATGCAATTGCTATGCGATCACGTCGAAGGAGTTCTGTGGTT
CAAATACCAACAGCCAGTATACAAATGGATTTACACACTATCTACTTAGA
AAGTATCAATGGAACCAAAAAGAAAGGTCAGATTTAAAATGTTTTAGAAA
AATTTGATATTATATGTATTTCATATATATAGGGCAAGTAAAAAAAAATC
CGAAAGTTACGTTACAAAGTTAATTTGAAAAGTAGATGGTAATTATTTCA
ATGGGTGTGAATCATGTTAAATTTTCTCAAACCATTGGGCATTCTCTATC
AGAGCATTCTCATTCCCTTCCTAGTGATGTGATATGGGGTTGTGGATCGG
GTGTGGATACGTCTAAATATACATGGCCCATCTTATACTAATACAATAAT
GACCGGTTAGTGAGGGCTGTACTGAGAAATATTGCCCGAGGTCAAATAAC
GACCGAGCTTGCGAGGTTGTTGCGTTGACCGAGGGCAATATTTTCAATAC
AGCCCGAAAAACCGGTCATTATTATATTTGTTAATCGTTTCCTTCAGCTT
CGATTGATTTTTTAGCGCTTTATCTAGGAAAAATAGCGAAATAAAGCGAA
AAACAAGCGAAAAGAGATAAGAAATTGTTATAATTTCTGACGTCAGAAAT
AAAAAATGAGAGAAATGATGTCAACGCATTGTTCATTTTCCTTTGAAAAA
AATGAATTTTCCTAACGACGGGCAACTCTGGGCAGTGAAGGCCCGTCGTC
ATGCGAAAAGAACCAATTCCATTGCGCAAAAAGCCGTGTAGCCCGCTTTG
AAAAAGTAGCCGGTTAACAACGTTCCATTTAATATGAAAGATTTTTTTAC
AGGGAAATCGTTTGAAGAACCGAAAGCGTCGAACAAAAAACTTCAGAAAA
ATGCAGCTGTTTACAGCTCTTTCGAGGGAGAAGGTACGTCTTGCACAGTG
GAGTCTCCATAACTCGAACACACACGTGGAACACAAATTTGTTCGAGTTA
AGGAAGTATCGAGTTATGGAGTAAGGTTTATTAAGGCCTTGTTAACTAAA
AGGAAACTGAAACTTGTTTTAGTTTAAGGAGACATTCGAGCTATAGAGGT
TCGAGTTAACGAGTTTCTATAGTATTACACAAATTTTTAAACCAAATGAG
TTTAGTTTTGGCTCATAATTCTACTATCTATTGCAGGGTAAGAAATTTTG
CGAAGGGGGACCGACCTTGAAGAAAATAACTCTTTTTTTCATTAATATTC
TTTTCCTTCTTTTTTCACAGACACGGAGAAAAAAGGAAGATTCGCCCTAC
TAAAACAAAAGTTTGTAAGTAAACTAATAATTAATTACAAAATTGTACAT
TTTGGGAAAAATCTGCTAGTGCTTATTTTCGTTTGACGGTCAATGCACTC
CATTGCAAACATTTTGAACTCTGTGTAATCAAGGTTCTGATCGCCAGAAA
CGTCAAACTCGGAGAAAATCTCACGAATAGAGTCGCCTTGTAGATTGAAA
AGAAAACCAAAGTTTTCAAATTCTTCAGCTGATATATTCCCTGATTTATC
TTCGTCTAAAAGGTCGAAAACTGTTCGTGAATGGCGGTAAATGAAATGTT
TTTCCTCTCGGTCTTGAACTGAGATTACGATACAAATCAAAAGATAAAAC
TCATTGAAATCAATACTACCCGATCCATCCACGTCCAACATGTCAAAAAC
CTTGTAAATTTGTGTTGTGGTCAAATCTGTGATTGATTTCAAGAAAGCAC
AGAACTGAACATCGTTTAAAGCATTGTCCCCATGCACATCGAGTAGTGTG
AAAAAATCATAAATCACTTTCAAATTTCTTCCTGATAATAAACTATAGTT
TTTGTCAAGATGTATATACTGCAAGAGTTTTGATGTGACCTTCATCTTTT
TGTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011104XLOC_011104Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019742-exon-sc0000335-1575043694:182940..183146TCONS_00019742-exon-sc0000335-1575043694:182940..183146Clytia hemisphaericaexon
TCONS_00019742-exon-sc0000335-1575043694:177235..177300TCONS_00019742-exon-sc0000335-1575043694:177235..177300Clytia hemisphaericaexon
TCONS_00019742-exon-sc0000335-1575043694:171559..171657TCONS_00019742-exon-sc0000335-1575043694:171559..171657Clytia hemisphaericaexon
TCONS_00019742-exon-sc0000335-1575043694:171071..171221TCONS_00019742-exon-sc0000335-1575043694:171071..171221Clytia hemisphaericaexon
TCONS_00019742-exon-sc0000335-1575043694:170264..170344TCONS_00019742-exon-sc0000335-1575043694:170264..170344Clytia hemisphaericaexon
TCONS_00019742-exon-sc0000335-1575043694:169293..169926TCONS_00019742-exon-sc0000335-1575043694:169293..169926Clytia hemisphaericaexon
TCONS_00019742-exon-sc0000335-1510915933:182940..183146TCONS_00019742-exon-sc0000335-1510915933:182940..183146Clytia hemisphaericaexon
TCONS_00019742-exon-sc0000335-1510915933:177235..177300TCONS_00019742-exon-sc0000335-1510915933:177235..177300Clytia hemisphaericaexon
TCONS_00019742-exon-sc0000335-1510915933:171559..171657TCONS_00019742-exon-sc0000335-1510915933:171559..171657Clytia hemisphaericaexon
TCONS_00019742-exon-sc0000335-1510915933:171071..171221TCONS_00019742-exon-sc0000335-1510915933:171071..171221Clytia hemisphaericaexon
TCONS_00019742-exon-sc0000335-1510915933:170264..170344TCONS_00019742-exon-sc0000335-1510915933:170264..170344Clytia hemisphaericaexon
TCONS_00019742-exon-sc0000335-1510915933:169293..169926TCONS_00019742-exon-sc0000335-1510915933:169293..169926Clytia hemisphaericaexon
TCONS_00019742-exon-sc0000335-1491911889:182940..183146TCONS_00019742-exon-sc0000335-1491911889:182940..183146Clytia hemisphaericaexon
TCONS_00019742-exon-sc0000335-1491911889:177235..177300TCONS_00019742-exon-sc0000335-1491911889:177235..177300Clytia hemisphaericaexon
TCONS_00019742-exon-sc0000335-1491911889:171559..171657TCONS_00019742-exon-sc0000335-1491911889:171559..171657Clytia hemisphaericaexon
TCONS_00019742-exon-sc0000335-1491911889:171071..171221TCONS_00019742-exon-sc0000335-1491911889:171071..171221Clytia hemisphaericaexon
TCONS_00019742-exon-sc0000335-1491911889:170264..170344TCONS_00019742-exon-sc0000335-1491911889:170264..170344Clytia hemisphaericaexon
TCONS_00019742-exon-sc0000335-1491911889:169293..169926TCONS_00019742-exon-sc0000335-1491911889:169293..169926Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000335supercontigsc0000335:169293..183146 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0878386	0	0	0.0794686	0.254365	0	0.290143	0.532582	2.73688	2.41049	2.28286	2.74205	1.25465	0	0.452076	0.0973719	2.44233	4.42015	0.505165	0.36388	3.84027	2.50754	0.717953	1.4724	3.13745	3.30022	0.796765	0.274378	0.12079	0.130176
Blast
[Close]
BLAST of TCONS_00019742 vs. Swiss-Prot (Human)
Match: EFCB9 (EF-hand calcium-binding domain-containing protein 9 OS=Homo sapiens GN=EFCAB9 PE=4 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 1.371e-41
Identity = 80/166 (48.19%), Postives = 113/166 (68.07%), Query Frame = -1 
Query:  711 LQYIHLDKNYSLLSGRNLKVIYDFFTLLDVHGDNALNDVQFCAFLKSITDLTTTQIYKVFDMLDVDGSGSIDFNEFYLLICIVISVQDREEKHFIYRHSRTVFDLLDEDKSGNISAXXXXXXXXXXXLQGDSIREIFSEFDVSGDQNLDYTEFKMFAMECIDRQTK 1208
            L Y++LDK Y LLS RN+K + ++F +LDVHG N LNDV F  FL  +TDL   QI  VFDMLD +  G IDF +FY+L+C++++ Q+  E  F+YRHSR VFDLLD      I A+ FE + FLFN+Q   ++++F +FD++GD  L+Y EFK++ +   D+  K
Sbjct:    9 LWYLYLDKIYCLLSVRNVKALAEYFHILDVHGKNTLNDVLFYHFLHHVTDLKKAQINIVFDMLDWNAVGEIDFEKFYMLVCMLLAHQNHLEGQFMYRHSRPVFDLLDLKGDLRIGAKNFEMYRFLFNIQKQELKDLFRDFDITGDNRLNYQEFKLYTIIYTDKLQK 174
The following BLAST results are available for this feature:
BLAST of TCONS_00019742 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EFCB91.371e-4148.19EF-hand calcium-binding domain-containing protein ... [more]
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