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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019736 ID=TCONS_00019736|Name=TCONS_00019736|organism=Clytia hemisphaerica|type=transcript|length=3358bp
ATCAGAGGTAAAGAAGTCGCACTATCCTTGGGATTAAAGAGATTTCGAGT
ATGAAGGTATAAAAAGGCGATGGCATGTATGGATTATTCAGAAGTTGTAG
TTGGCATCTTGCCTAGACAACACCAGAGACTCAATCACAATGACGAGCAT
GAAGACTTCAACAGTAGTTCTTGCTATTCTGTCAGTGATCTTTGCTGTTC
AAGGAGACCTTCCAACATCATCAACAGGCCCTTCATGTCCAAGCACATTA
TGCCAAGGAAAATCAAATGGTGCACTATTCAGGCTGAGTGAGAATTTCCC
AAATTATTACGTCCAATGCAGTCACGGTAAACCCTATTGTCGACCATGTC
CACCGAAAACAGTTTTTGATAATGCTGTAAGAGTTTGTGTATGGGCATCT
GCCACAAATAACAATGGTATTTACAACCCATTTCATCATGGCAAAAAACC
TCAACAGGCTTCAACAACAACCACCAAAAGACCACATCatccaacaacaa
aacaaacgaCAACCACAACGACAACGACGACACCGACACCGACAACCACA
ACGACAACGACGACACCGACAACCACAACGACAACGACGACACCGACGAC
AACGACTAGCACTACACCAAGTACAACAACAACTCAAACAACGAAAGCTC
ACGACCCCTATCATAAGATCAAACCGCACCATCCTGTAACAACGAAGAAA
CCGTACGACCCTTATCATAATATGAAGCCACAACATCCAGCAACAACAAA
AAATCCTCACGATCCTTACCACATGGTTAAACCTCATCATCCTAAACCAC
ACCACCCTCACGATCAGTACAACCCATATATGATGAAAACTACGACGACT
TCAACTACCCCGACAAAAACTACAACGACGACAAAAGTTACAACGACAAC
TAAGAGACCACACAACCCTTACCATGGAATACATCATCCAAACCCATTCA
ACATCTACCACCCTGTGTACGTTGGTATTCATCCTAACAACCCTTACCAC
CCTTTCCACCCGTTCCCAACAAAGAAACCGTATCCAACTGCACCTACAAC
TCGTTATACCAACCCTACGACCAAATCAACGACTACACACTATACTCATC
CAACAACAACCTCTACAATTACAACTCATCCCACTAAACCAACAACTCAT
CCAACAGCTCACCCAACAACTCATCCTACAACTCACCCAACAACTCATCC
TACAACTCACCCAACAACTCATCCTACAACAACAAAATCAACCACGACAA
CTCACTACACTCATCCTACAACTCATCCTACAACAACAAAATCAACCACG
ACAACTCACTACACTCATCCAACAACTCACCCAACAACTCATCCTACAAC
TCATCCTACAACAACAAAATCAACCACGACAACTCACTACACTCATCCAA
CAACTCACCCAACAACTCATCCAACAACTCATCCTACAACAACAAAATCA
ACCACGAcaactcactacactcacccaaCGACTCATCCAACGACTCATCC
AACAACTCATCCTACAACAACAAAATCAACCACGACAACACATTATACTC
CAATCACAACAAAGTCGACAACGAcaactcactacactcacccaaCGACT
CATCCAACAACTCACCCAACGACTAAATCAACAACTCACTATACTCATCC
AACTCAGCCATCGACGACAACCCACTACACTCATCCAACCCAACCATCGA
CAACAACCCACTTTACTCACCCAACAACTAAGTCAACGACCCATTACACC
AACCCAACGACTACAACACATTATACCCATCCGACCCAACCTTCAACCAC
CACTNCAACCCAACGACTACAACCCATTATACCCATCCGACCCAACCTTC
AACAACCACTCACTACACACATCCAACAACTAAGAGACCATACCAACCAA
ATCCACACCAGCCTACCTTTGATCCTTTCTTCCACTACTTGATCACATCA
ACAACGAAGAAGCCAGACATCCACGACCCATTCGCACATCTGAGAATCCC
ATATCATCCACATCCTACAACCAAGTCTACAACAACCCGACCAACACACC
CACCAACTACAACCCACTATACCCACCCAACAACTAAATCAACCACCCAT
CCAACGACAAAAAGTACAACTCACTATACCCATCCAACCACCACAACCCA
CCAGACAACCAAGTCAACAACTGACTACACACAGCCAACTCAACCATCGA
CAACAACTCATTACACTAACCCTACAACAACGAAGAAGCCATCCATCCAC
GACCCATTTGCACATTTAAGAATCCCATATCACCCACACCCAACTACAAA
GTCAACGACTCATTACACCAGACCAACACACCCACCAACAACAACCCAAT
ATACCCACCCAACAACTAAATCAACCACCCATCCAACGACAAAGAGTACA
ACTCACTATACCCATCCAACCACCACGACCCACCCGACAACCAAGTCTAC
AACCCATCACACAAACCCTACAACAACGAAGAAGCCATATTTCCATGACC
CATTTGCACATCTGAGAATCCCATTCCAACCACACCCAACAACCAAGTCG
ACGACACATTACACTCGTCCTACAATCAAGAGTACAACACACTACACTCA
TCCAACCAATCCAACAACAACCACTCATTCCACACACCCAACGACAAAGC
CAACGACAACTCACTACACTCATCCTACTACTACGACTCCCTATACAAAC
CCAACAACCACAACCCATTCTACCCAACCAACAACTAAATCAACAACTCA
CTATACTCATCCAACTCAGCCATCGACAACAACCCACTACACTCATCCAA
CAACTAAAAGTACAACCCACCCAACGACAAAGAGTACGACACACTATACA
CATCCAACGCAACCATCGACAACAACGCAATATACTAACCCAACCACCAC
ACGACATTATAAACAACCAGTGGCTCCAACAATCATCCCTTgTCCAAAAT
CGTTGTGTTATGGATACAGTGGTAACACGTGGATATTCTTCATCTATCCT
GGTCAACCACAATGGTATGTACAGTGTGTCCGAGGAACATCACATTGTCG
TAAGTGTCGGGAAGGTACACTATTCAATCCAATAGTCAACACTTGTACAT
CACAACATGTTCCTTTTAATCATCCTCCTCAGAATCATCATCCTCACGAT
ACAAGAGTACCTGGATGTCATGGACCAAATTGTGACTATGTTTAAAATcc
taataaaataatttttttagaaaaataagaatctatcttttatctatttt
tttttagttaTTTTAAAGCATATCCCTTATATGATATTTTTAGcgtattt
taaacattttttaggTGGGAATTTTTATATGACTGGCATTTATTGCCACA
AGTGAAAA Run BLAST on NCBI transcript from alignment at sc0000335:265626..271782+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00019736 ID=TCONS_00019736|Name=TCONS_00019736|organism=Clytia hemisphaerica|type=transcript|length=6157bp|location=Sequence derived from alignment at sc0000335:265626..271782+ (Clytia hemisphaerica)
ATCAGAGGTAAAGAAGTCGCACTATCCTTGGGATTAAAGAGATTTCGAGT
ATGAAGGTATAAAAAGGCGATGGCATGTATGGATTATTCAGAAGTTGTAG
TTGGCATCTTGCCTAGACAACACCAGAGACTCAATCACAATGACGAGCAT
GAAGACTTCAACAGTAGTTCTTGCTATTCTGTCAGGTATGTAACAGTTTT
TCTTTGTCACACCCCTGTATCAAATAAAAGAGGTAAATGACAATAGCGCG
ATGAAAAACGCCTTTTTAATGGGTGGGAATTTCAAACTTCATATTTCCAG
CTCGGAAATCAAGTAGAGCGATACTCAAAATTACAGCATATGTCGCAATG
GGAAAGAGTAGTTTTCCAATGAGTGAAATTCTGTAGTATTAGTCTGAGGG
ATTTTGGGTTTTTTTTGACTGGACCCAAAATTTGCATCCACatggaattt
tttgattgaaatgagtTCATTAGGTCCCTAGGAGTGAAAAACCGTTGAGT
GCCACTTTTCTCACCTTGGGCATTTCGCATAATGGTGGGAATGGTCCCAT
TATGACTTTTCCAATGGGTAATCGAGGGTTCAAATCGGGAAAAATAGAAA
GGAAGTACTCTCCGGGTTGTTTGAGTTTAAAATTTACGAGATAATTATTT
ATTTTGGTTGATGTGTGCCATCATACGCAAAACAAAGAATCTCATCCAAG
ACACACTTAttttaacttaattttttcatttttatgtagTGATCTTTGCT
GTTCAAGGAGACCTTCCAACATCATCAACAGGCCCTTCATGTAAGTAAAT
TACCCCACACGttatcttttataagaacatccaaaacttttgaagccttc
ggatgttcttaactttttgagtatttttgtcaattttcctaagaaatcgg
gtgttttagagtccagaAAGCCTTAGaattttcttaatttgttcttaata
ttttgaccatcgaagtcttatgttcttatatagtttgctctgataaaaaa
catgtataacgctaaaatgtaaaattttacatattttttgtaATGAGAAT
GTTTACCTATCCATGCTCATATTCATATTCCAGGTCCAAGCACATTTTGC
CAAGGAAAATCAAATGGTGCATTATTCAGGCTGAGTGAGAATTTCCCAAA
TTATTACGTCCAATGCAGTCACGGTAAACCCTATTGTCGGCCATGTCCAC
CGAAAACAGTTTTTGATAATGTTGTAAGAGTTTGTGTATGGGCATCTCCC
ACAAATAACAATGGTCTTTACAACCCATTCCATCATGGCAAAAAACCTCA
ACAAGCTTCAACAACGACCACCAAAAGACCACATCatccaacaacaaaac
aaacgaCAACCACAACGACAACAACGACACCGACAACCACAACCACAACG
ACGACACCGACGACAACGACTAGCACAACACCAAGTACAACAACAATTCA
AACAACGACGACAACGAAAGCTCACGACCCCTATCACAAGATCAAACCGC
ACCATCCTGCAACAACGAAGAAACCGTACGACCCTTATCATAATATGAAG
CCACAACATCCGATAACAACAAAAAAGCCTCACGATCCTTACCACATGGT
TAAACCTCATNATTTTTAATGGGTGGGAATTTCAAACTTTATTATTTCCA
GCTCGGAAATCAATTAGAGCGATACTCAAAATTACAGCATATGTCGCAAT
GGGAAAGAGTAGTTTTCCAATGAGTGAAACTCTATAGTAATAGTCTGAGG
GATTTTGGGTTTTTTTTGACTGGACCCAAAATTTGCGTCcacatgaaatt
ttttgattgaaatgagtTCATTAGCTCCCTAGGAGGGAAAAACCGTTGAG
TGCCACTTTTCTCACCTTGGGCATTTCCCATAATGGTGGGAATGGTCCCA
TAATGACTTTTCCAATGAGTAATCGAGGGTTCAAATCGGGAAAAATAGAA
AGGAAGTACTCTCCGGGTTGTTTGAGTCTAAAATTTACGAGATAATTATT
TATTTTGGTTGATGTGTGCCATCATACGCAAAACAAAGAATCTCATCCAA
GACACACTTAttctaaattaattttttcatttttatgtagTGATCTTTGC
TGTTCAAGGAGACCTTCCAACATCATCAACAGGCCCTTCGTGTAAGTAAA
TTACCCCACACGCTAtctttaataagaacatccaacatttttggagcctt
cggatgttcttaactttttgagttttaagcctggaaatgttcttaatatg
ttcttattttcaccattttttgagtatttttgtcaattttcctaagaaat
cgggtgttttagagtccggaaagccttagaatgttcttaacttgttctta
atattttgaccatcgaagtcttatgttcttatatagtttgctcttataaa
aaacgtgtataacgctaaaatgtaaaattttacatattttttgtaATGAG
AATGTTTACCTATTCATGCTCATATTCATGTTACAGGTCCAAGCACATTA
TGCCAAGGAAAATCAAATGGTGCACTATTCAGGCTGAGTGAGAATTTCCC
AAATTATTACGTCCAATGCAGTCACGGTAAACCCTATTGTCGACCATGTC
CACCGAAAACAGTTTTTGATAATGCTGTAAGAGTTTGTGTATGGGCATCT
GCCACAAATAACAATGGTATTTACAACCCATTTCATCATGGCAAAAAACC
TCAACAGGCTTCAACAACAACCACCAAAAGACCACATCatccaacaacaa
aacaaacgaCAACCACAACGACAACGACGACACCGACACCGACAACCACA
ACGACAACGACGACACCGACAACCACAACGACAACGACGACACCGACGAC
AACGACTAGCACTACACCAAGTACAACAACAACTCAAACAACGAAAGCTC
ACGACCCCTATCATAAGATCAAACCGCACCATCCTGTAACAACGAAGAAA
CCGTACGACCCTTATCATAATATGAAGCCACAACATCCAGCAACAACAAA
AAATCCTCACGATCCTTACCACATGGTTAAACCTCATCATCCTAAACCAC
ACCACCCTCACGATCAGTACAACCCATATATGATGAAAACTACGACGACT
TCAACTACCCCGACAAAAACTACAACGACGACAAAAGTTACAACGACAAC
TAAGAGACCACACAACCCTTACCATGGAATACATCATCCAAACCCATTCA
ACATCTACCACCCTGTGTACGTTGGTATTCATCCTAACAACCCTTACCAC
CCTTTCCACCCGTTCCCAACAAAGAAACCGTATCCAACTGCACCTACAAC
TCGTTATACCAACCCTACGACCAAATCAACGACTACACACTATACTCATC
CAACAACAACCTCTACAATTACAACTCATCCCACTAAACCAACAACTCAT
CCAACAGCTCACCCAACAACTCATCCTACAACTCACCCAACAACTCATCC
TACAACTCACCCAACAACTCATCCTACAACAACAAAATCAACCACGACAA
CTCACTACACTCATCCTACAACTCATCCTACAACAACAAAATCAACCACG
ACAACTCACTACACTCATCCAACAACTCACCCAACAACTCATCCTACAAC
TCATCCTACAACAACAAAATCAACCACGACAACTCACTACACTCATCCAA
CAACTCACCCAACAACTCATCCAACAACTCATCCTACAACAACAAAATCA
ACCACGAcaactcactacactcacccaaCGACTCATCCAACGACTCATCC
AACAACTCATCCTACAACAACAAAATCAACCACGACAACACATTATACTC
CAATCACAACAAAGTCGACAACGAcaactcactacactcacccaaCGACT
CATCCAACAACTCACCCAACGACTAAATCAACAACTCACTATACTCATCC
AACTCAGCCATCGACGACAACCCACTACACTCATCCAACCCAACCATCGA
CAACAACCCACTTTACTCACCCAACAACTAAGTCAACGACCCATTACACC
AACCCAACGACTACAACACATTATACCCATCCGACCCAACCTTCAACCAC
CACTNCAACCCAACGACTACAACCCATTATACCCATCCGACCCAACCTTC
AACAACCACTCACTACACACATCCAACAACTAAGAGACCATACCAACCAA
ATCCACACCAGCCTACCTTTGATCCTTTCTTCCACTACTTGATCACATCA
ACAACGAAGAAGCCAGACATCCACGACCCATTCGCACATCTGAGAATCCC
ATATCATCCACATCCTACAACCAAGTCTACAACAACCCGACCAACACACC
CACCAACTACAACCCACTATACCCACCCAACAACTAAATCAACCACCCAT
CCAACGACAAAAAGTACAACTCACTATACCCATCCAACCACCACAACCCA
CCAGACAACCAAGTCAACAACTGACTACACACAGCCAACTCAACCATCGA
CAACAACTCATTACACTAACCCTACAACAACGAAGAAGCCATCCATCCAC
GACCCATTTGCACATTTAAGAATCCCATATCACCCACACCCAACTACAAA
GTCAACGACTCATTACACCAGACCAACACACCCACCAACAACAACCCAAT
ATACCCACCCAACAACTAAATCAACCACCCATCCAACGACAAAGAGTACA
ACTCACTATACCCATCCAACCACCACGACCCACCCGACAACCAAGTCTAC
AACCCATCACACAAACCCTACAACAACGAAGAAGCCATATTTCCATGACC
CATTTGCACATCTGAGAATCCCATTCCAACCACACCCAACAACCAAGTCG
ACGACACATTACACTCGTCCTACAATCAAGAGTACAACACACTACACTCA
TCCAACCAATCCAACAACAACCACTCATTCCACACACCCAACGACAAAGC
CAACGACAACTCACTACACTCATCCTACTACTACGACTCCCTATACAAAC
CCAACAACCACAACCCATTCTACCCAACCAACAACTAAATCAACAACTCA
CTATACTCATCCAACTCAGCCATCGACAACAACCCACTACACTCATCCAA
CAACTAAAAGTACAACCCACCCAACGACAAAGAGTACGACACACTATACA
CATCCAACGCAACCATCGACAACAACGCAATATACTAACCCAACCACCAC
ACGACATTATAAACAACCAGTGGCTCCAACAATCATCCCTTGTAAGTTTT
TAAAGACCTTAAGGATTATTAGCTTAAAAACTCTGTTgtaaaaagtttca
attttcaaaaatttaaaatgtatcGGACCTCAAGAGTTTGGTaacagaaa
aagaagaagaaataagaatcttcattgtatattaGCCTTAACGAAGGAAC
AGTATTTTTAATCAATATCTTAACCCTATAAGTACCATGGTCAtttgttt
ctaaatttttataaaggaaatcgctagttcaaactttaaaggcttatatc
tccggatctagaatgAGTTAGAAGCTGCGCGGACCTATCTGAATGATAAA
AAGGTGCCCagtagtaaaacttcaaattaattcgctaGATGACAGAACCA
AGTAAACAGGGccaattttggatgttcttaaatcccttgttgacaaaata
tggtaaaaaaacggtcaaaatcttagaaaagtggatttttgtcaaatttt
cgcCCTCCTATATGGGCCCGTGTCTAGTATACTCGTCATTGATACTTAAA
GGGTCAAtgttaaacctttattattttttttcgatttcaggTCCAAAATC
GTTGTGTTATGGATACAGTGGTAACACGTGGATATTCTTCATCTATCCTG
GTCAACCACAATGGTATGTACAGTGTGTCCGAGGAACATCACATTGTCGT
AAGTGTCGGGAAGGTACACTATTCAATCCAATAGTCAACACTTGTACATC
ACAACATGTTCCTTTTAATCATCCTCCTCAGAATCATCATCCTCACGATA
CAAGAGTACCTGGATGTCATGGACCAAATTGTGACTATGTTTAAAATcct
aataaaataatttttttagaaaaataagaatctatcttttatctattttt
ttttagttaTTTTAAAGCATATCCCTTATATGATATTTTTAGcgtatttt
aaacattttttaggTGGGAATTTTTATATGACTGGCATTTATTGCCACAA
GTGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00019736-exon-sc0000335-1491911889:265626..265810 | TCONS_00019736-exon-sc0000335-1491911889:265626..265810 | Clytia hemisphaerica | exon |
| TCONS_00019736-exon-sc0000335-1510915933:265626..265810 | TCONS_00019736-exon-sc0000335-1510915933:265626..265810 | Clytia hemisphaerica | exon |
| TCONS_00019736-exon-sc0000335-1575043694:265626..265810 | TCONS_00019736-exon-sc0000335-1575043694:265626..265810 | Clytia hemisphaerica | exon |
| TCONS_00019736-exon-sc0000335-1491911889:266365..266415 | TCONS_00019736-exon-sc0000335-1491911889:266365..266415 | Clytia hemisphaerica | exon |
| TCONS_00019736-exon-sc0000335-1510915933:266365..266415 | TCONS_00019736-exon-sc0000335-1510915933:266365..266415 | Clytia hemisphaerica | exon |
| TCONS_00019736-exon-sc0000335-1575043694:266365..266415 | TCONS_00019736-exon-sc0000335-1575043694:266365..266415 | Clytia hemisphaerica | exon |
| TCONS_00019736-exon-sc0000335-1491911889:268112..270816 | TCONS_00019736-exon-sc0000335-1491911889:268112..270816 | Clytia hemisphaerica | exon |
| TCONS_00019736-exon-sc0000335-1510915933:268112..270816 | TCONS_00019736-exon-sc0000335-1510915933:268112..270816 | Clytia hemisphaerica | exon |
| TCONS_00019736-exon-sc0000335-1575043694:268112..270816 | TCONS_00019736-exon-sc0000335-1575043694:268112..270816 | Clytia hemisphaerica | exon |
| TCONS_00019736-exon-sc0000335-1491911889:271366..271782 | TCONS_00019736-exon-sc0000335-1491911889:271366..271782 | Clytia hemisphaerica | exon |
| TCONS_00019736-exon-sc0000335-1510915933:271366..271782 | TCONS_00019736-exon-sc0000335-1510915933:271366..271782 | Clytia hemisphaerica | exon |
| TCONS_00019736-exon-sc0000335-1575043694:271366..271782 | TCONS_00019736-exon-sc0000335-1575043694:271366..271782 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000335 | supercontig | sc0000335:265626..271782 + |
Blast
The following BLAST results are available for this feature:
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