TCONS_00019704 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019704
Unique NameTCONS_00019704
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2273

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019704 ID=TCONS_00019704|Name=TCONS_00019704|organism=Clytia hemisphaerica|type=transcript|length=2273bp
AGATTCGCATTGTTAGACCACCCAATTATTTCATGGCCATCACTATTGGT
GTCTTGCTTGCTGGTATTGGAGCTTTGCTTTACGTCAAAAGAAAAAGCAT
TGAAATTATCTACAATAAAGACTACTGGGGAATTTTATGTTTGACAATAG
CCTTTATGATGATGAGTGGCCAAATGTGGAACCATATCAGAGGTCCTCCA
TACGCACACAGAAACCCACAGACTGGTGAAATTAATTATATCCATGGAAG
CAGTGATGGTCAATTGATCGCTGAAACTTACATCGTCTTTCTTTTGTATG
CATGCGTCACTGTAGGATTCATTATGTTGAATGAGCGTGCTCAGGAACAA
ACTACTCTTAAGAAACGTCGTCTTTTTACATTGATTGGAACAGTCATGGT
TGGTGTATTTTTCAGTTTGATTCTCTCTGTTTTCAGAAGTAAATACCATG
GCTACCCTTACAGTTGAAAaataagaaaattaaaagaaacatAATGAACG
TTTTGGATGATTTGCCAGAAGGATTGGACGATTTACGTATCAGGGAAGGT
GGATTCAACGATGGACATGTGCGCACCAGTGGTATCGATATTCAAAAACT
GAATAAGGGATTGGAAAGTAACTTTGAGATTCAAATGAAGGATGAACAAG
ACGATGTACCGCAACCAGAAACAAACGAGAATCAATTCAATCCTCAGGAA
TTGTTTCAACAGTTGAATTATGAATGTAATGATACTGAGgTCAGTGATCC
GGCTTTAGAGCACCTGTCACCTTTCGAACGAATGAAACAAACCATGGAGG
ACATTTCTCCTGTCGGTGATGGGGGTATCATGAAAATGATCTTGAAGCAT
GGTGCAGGTAGTGTGGTGCCACCAAGATCTTTGTGTCGTGTTCATTACAA
TGGCTACTTTGAATTCAATGACGAACCGTTCGATTCCAGTCGATTACGTG
GTCGACAACATCAATTCAAACTTGGTGAAGGTGAAATTTTGATGGGCTGG
GAGATTGGAATCGGCACCATGAAACGTGGAGAGTTGGCTCGTTTTATCAT
GACGTCCCAATACGCGTATGGAAAATATGGGTGTCCACCACGTATACCCA
AGGACGCCACACCCATGTTTGAAATTGAACTGATTAGTTTTGTTGATCAA
GGAGCAGCTGATGATTACGAAAGTTTTACAGAGGAGGAACGAAAGAAGGC
GACTTTTGAAGAGATTCTGGGAGCCGTTGATGCGTTGAGAAAGACTGGTA
ATGAAGCTTTTGAACTGAACCAAGTGAAGAGAGCTTCAACCTCCTACATG
CGTGCTATTCGCTTGTTGGAGAATGCTAATCTTAAGAATGAATACGAGGA
AatcgaaatgaaaaaatccgcgCTCAAGTTGTATTTGAATATGACGTTAA
TGGACTTGAAGGAGGCAAAGTCAGGGCGTGCATGTAAACACGCCCGCAAG
GCTCTTGAAATCGAACCGAAGAATGTGAAAGCATTGTACAGGTTAGCAAG
GGCGTTGCACCAGCTTGGTGATTTGGAGAGTGCTAAGAAAGAGATTTGGA
AAGCTCACAGATATTCTCCTGGTAACGAAGAAGTGATGAAGGAAATGCGA
CAACTTGATAACGAACTTGCTCGATACAAACGCAAAGATCAGGCACTATC
AAGGAAAATGTTAAACCTTGATCCAATGCCTAAGAAAGCTGCAGCACCCA
AAAACCCAACACCTGCTCAAAGTCAAATGTTAAAGATGGTTCTTGATCGG
TTGAAATCTTTCAAGAATTCCAGTGATTTACCGGAAATGCGGTTACCAGA
TACTCTGACTCAAGAGGAGGTGGATAGTGTGAAGATAGCTGTCAATGAAT
tggatttatttttctcttctacTCAGGCTAATGGACAAACAATGATTATC
GTCTCTAAAACTTCTTTACAAGAGAAATAGACTTGTGTTTAGGAACAATG
TGTACACTTTTGTCGAACTTTCATCAAGGACTACGTTGTATTATTGGAAT
GTAAATTCAAAGCAAAGATTTCATTGTTTTGAAAGCACTCAACGGGAATT
GTGATTTGATTCAAAATGTCATTTGTATCATCTAGCATCATAGCATCTTT
TGAAAAACTAGAAAAAACACTTCgttcatattttttaaccgATAGGAgct
ttgttatttttgtatatACATATCATAAAGTGAAAGAAAAGCCATATATT
AACAATATATACTAACAATaaagaattttggaatttccaACTTCAGTGCA
CAGTTTTCAGCTAACGTAGAAAT
Run BLAST on NCBI

protein sequence of TCONS_00019704-protein

>TCONS_00019704-protein ID=TCONS_00019704-protein|Name=TCONS_00019704-protein|organism=Clytia hemisphaerica|type=polypeptide|length=478bp
MNVLDDLPEGLDDLRIREGGFNDGHVRTSGIDIQKLNKGLESNFEIQMKD
EQDDVPQPETNENQFNPQELFQQLNYECNDTEVSDPALEHLSPFERMKQT
MEDISPVGDGGIMKMILKHGAGSVVPPRSLCRVHYNGYFEFNDEPFDSSR
LRGRQHQFKLGEGEILMGWEIGIGTMKRGELARFIMTSQYAYGKYGCPPR
IPKDATPMFEIELISFVDQGAADDYESFTEEERKKATFEEILGAVDALRK
TGNEAFELNQVKRASTSYMRAIRLLENANLKNEYEEIEMKKSALKLYLNM
TLMDLKEAKSGRACKHARKALEIEPKNVKALYRLARALHQLGDLESAKKE
IWKAHRYSPGNEEVMKEMRQLDNELARYKRKDQALSRKMLNLDPMPKKAA
APKNPTPAQSQMLKMVLDRLKSFKNSSDLPEMRLPDTLTQEEVDSVKIAV
NELDLFFSSTQANGQTMIIVSKTSLQEK
Run BLAST on NCBI

transcript from alignment at sc0000335:6171..10056+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019704 ID=TCONS_00019704|Name=TCONS_00019704|organism=Clytia hemisphaerica|type=transcript|length=3886bp|location=Sequence derived from alignment at sc0000335:6171..10056+ (Clytia hemisphaerica)
AGATTCGCATTGTTAGACCACCCAATTATTTCATGGCCATCACTATTGGT
GTCTTGCTTGCTGGTATTGGAGCTTTGCTTTACGTCAAAAGAAAAAGCAT
TGAAATTATCTACAATAAAGACTACTGGGGAATTTTATGTTTGGTGAGGC
TAATATCTTCGGTCTGATCTGATTCTGCAACAAAGTCAAGTTTACCATTT
CAATCAGTTGCAAGGTTTATCTATATATCTATTATCTAGAGTAATTAAtg
taatttcttcctttattcGAGCTACAATCCTGAATTTATTTCCATTTTGT
TTTCCCTTCACAGACAATAGCCTTTATGATGATGAGTGGCCAAATGTGGA
ACCATATCAGAGGTCCTCCATACGCACACAGAAACCCACAGACTGGTGAA
ATTGTATGTTATTTCTCTTCTTCAAATTTAGTTTAGCTCAAATCAAATCA
TTTTGTTAACGCTTGccgtgaaaaaaaataaaacgacGGAAATGTTATCA
TAGTTCATAAAACTTATGAGTAGATTACCCAAGTTATAACTAAACTTTGT
CAAGGGTTTCGAGCATCTTGTTAACCATCAAGCCCAAGAGCATTTTTTGT
TTCTACCAATTGTTGTAATTATTTAATTCTTTCTCTTTTCAGAATTATAT
CCATGGAAGCAGTGATGGTCAATTGATCGCTGAAACTTACATCGTCTTTC
TTTTGTGTATCCTTTTCCACTCACTTTTTAAGTtaggaattttattttct
tacttGCTTTTACGCCTCATTCACCtccaaattcaaaataattccaaaaa
gaataccaaggcaaattttgtttgtgtaatttagatttttcatctGTCTT
GTTTTGTTAAACCCTTGTTTCAGTGATCCGGTGAGATCTTCCATAAATTC
TTGTCTCAGTGAACCGTTGGACATTCCCATACACCccttcacccctgtct
cagtggcCGGTGAAATTCAGAAAGTATTAAGCATTAAAGTCATTTGTCAT
CTTTGTCCTTAACTTTACTTACATAATATAGATGCATGCGTCACTGTAGG
ATTCNGTCATTTGTCATCTTTGTCCTTAACTTTACTTACATAATATAGAT
GCATGCGTCACTGTAGGATTCATTATGTTGAATGAGCGTGCTCAGGAACA
AACTACTCTTAAGAAACGTCGTCTTTTTACATTGATTGGAACAGTCATGG
TTGGTGTATTTTTCAGTTTGATTCTCTCTGTTTTCAGAAGTAAATACCAT
GGCTACCCTTACAGGTATGTTGAATTTCCACATCTTCTTCTCATTTCTCA
TAACTCATCTATTAACTCTTGGCCCCTATTTAATGATTGCGGTTGACAAT
AAGGATTGTTCATTACATGCAAAATGATTATTAGAATATCGATTTGTTCG
TCGCAGTTTTCTCTAAAATTCTCTTAAAAAAGGCTCAAAACTGAaaatct
tcttttctttttttcagcttcCTTTTCAAATGAAGAAAATCGAACAATTT
GAGAAGAAAAGTTTGTTCAAACTAGCTGTATACATTTTGTCAAATAGATA
CATCAACTTCAATTTAGGggttttgaaatttctaatAATTATTATGTACT
AAGGAAACTTTTTTAGATTAGaatttaaaattgtaaaatttctttcgaaa
agaaaagaaatcctTCTTCATTGTTTAAATTCATCATAgtcaataaaata
gattttttaaagcacttGCGGCGTaatcaaaagctttttctttTAATGGT
ATTATCTTTTACTCAGGTTTCGAGTTGTGAAGCCTAGAAGATTTGGCAAA
ATTAACTTTTCTTGAAAATACACTTTCAATTTAATTAATGCATCAATACC
GATAGAAAGCTTTTGAGATCATGCTGTACtttatctaaaaatataaaaac
tatctattttctgttttttgttACAGTTGAAAaataagaaaattaaaaga
aacatAATGAACGTTTTGGATGATTTGCCAGAAGGATTGGACGATTTACG
TATCAGGGAAGGTGGATTCAACGATGGACATGTGCGCACCAGTGGTATCG
ATATTCAAAAACTGAATAAGGGATTGGAAAGTAACTTTGAGATTCAAATG
AAGGATGAACAAGACGATGTACCGCAACCAGAAACAAACGAGAATCAATT
CAATCCTCAGGAATTGTTTCAACAGTTGAATTATGAATGTAATGATACTG
AGGTAtgtttggtaaaaaaaaaaatttttccggttgtAATTATCCAAATT
CATTGTCTACTGTCAAACATTGggaagttctttatttgtcaATCATAAAt
atcaaatcatttttgaatTGGTCTCAACATATTtgctttttcatgttttt
aggTCAGTGATCCGGCTTTAGAGCACCTGTCACCTTTCGAACGAATGAAA
CAAACCATGGAGGACATTTCTCCTGTCGGTGATGGGGGTATCATGAAAAT
GATCTTGAAGCATGGTGCAGGTAGTGTGGTGCCACCAAGATCTTTGTGTC
GTGTTCATTACAATGGCTACTTTGAATTCAATGACGAACCGTTCGATTCC
AGTCGATTACGTGGTCGACAACATCAATTCAAACTTGGTGAAGGTGAAAT
TTTGATGGGCTGGGAGATTGGAATCGGCACCATGAAACGTGGAGAGTTGG
CTCGTTTTATCATGACGTCCCAATACGCGTATGGAAAATATGGGTGTCCA
CCACGTATACCCAAGGACGCCACACCCATGTTTGAAATTGAACTGATTAG
TTTTGTTGATCAAGGAGCAGCTGATGATTACGAAAGTTTTACAGAGGAGG
AACGAAAGAAGGCGACTTTTGAAGAGATTCTGGGAGCCGTTGATGCGTTG
AGAAAGACTGGTAATGAAGCTTTTGAACTGAACCAAGTGAAGAGAGCTTC
AACCTCCTACATGCGTGCTATTCGCTTGTTGGAGAATGCTAATCTTAAGA
ATGAATACGAGGAAatcgaaatgaaaaaatccgcgCTCAAGTTGTATTTG
AATATGACGTTAATGGACTTGAAGGAGGCAAAGTCAGGGCGTGCATGTAA
ACACGCCCGCAAGGCTCTTGAAATCGAACCGAAGAATGTGAAAGCATTGT
ACAGGTTAGCAAGGGCGTTGCACCAGCTTGGTGATTTGGAGAGTGCTAAG
AAAGAGATTTGGAAAGCTCACAGATATTCTCCTGGTAACGAAGAAGTGAT
GAAGGAAATGCGACAACTTGATAACGAACTTGCTCGATACAAACGCAAAG
ATCAGGCACTATCAAGGAAAATGTTAAACCTTGATCCAATGCCTAAGAAA
GCTGCAGCACCCAAAAACCCAACACCTGCTCAAAGTCAAATGTTAAAGAT
GGTTCTTGATCGGTTGAAATCTTTCAAGAATTCCAGTGATTTACCGGAAA
TGCGGTTACCAGATACTCTGACTCAAGAGGAGGTGGATAGTGTGAAGATA
GCTGTCAATGAATtggatttatttttctcttctacTCAGGCTAATGGACA
AACAATGATTATCGTCTCTAAAACTTCTTTACAAGAGAAATAGACTTGTG
TTTAGGAACAATGTGTACACTTTTGTCGAACTTTCATCAAGGACTACGTT
GTATTATTGGAATGTAAATTCAAAGCAAAGATTTCATTGTTTTGAAAGCA
CTCAACGGGAATTGTGATTTGATTCAAAATGTCATTTGTATCATCTAGCA
TCATAGCATCTTTTGAAAAACTAGAAAAAACACTTCgttcatatttttta
accgATAGGAgctttgttatttttgtatatACATATCATAAAGTGAAAGA
AAAGCCATATATTAACAATATATACTAACAATaaagaattttggaatttc
caACTTCAGTGCACAGTTTTCAGCTAACGTAGAAAT

Coding sequence (CDS) from alignment at sc0000335:6171..10056+

>TCONS_00019704 ID=TCONS_00019704|Name=TCONS_00019704|organism=Clytia hemisphaerica|type=CDS|length=2874bp|location=Sequence derived from alignment at sc0000335:6171..10056+ (Clytia hemisphaerica)
ATGAACGTTTTGGATGATTTGCCAGAAGGATTGGACGATTTACGTATCAG
GGAAGGTGGATTCAACGATGGACATGTGCGCACCAGTGGTATCGATATTC
AAAAACTGAATAAGGGATTGGAAAGTAACTTTGAGATTCAAATGAAGGAT
GAACAAGACGATGTACCGCAACCAGAAACAAACGAGAATCAATTCAATCC
TCAGGAATTGTTTCAACAGTTGAATTATGAATGTAATGATACTGAGgTCA
GTGATCCGGCTTTAGAGCACCTGTCACCTTTCGAACGAATGAAACAAACC
ATGGAGGACATTTCTCCTGTCGGTGATGGGGGTATCATGAAAATGATCTT
GAAGCATGGTGCAGGTAGTGTGGTGCCACCAAGATCTTTGTGTCGTGTTC
ATTACAATGGCTACTTTGAATTCAATGACGAACCGTTCGATTCCAGTCGA
TTACGTGGTCGACAACATCAATTCAAACTTGGTGAAGGTGAAATTTTGAT
GGGCTGGGAGATTGGAATCGGCACCATGAAACGTGGAGAGTTGGCTCGTT
TTATCATGACGTCCCAATACGCGTATGGAAAATATGGGTGTCCACCACGT
ATACCCAAGGACGCCACACCCATGTTTGAAATTGAACTGATTAGTTTTGT
TGATCAAGGAGCAGCTGATGATTACGAAAGTTTTACAGAGGAGGAACGAA
AGAAGGCGACTTTTGAAGAGATTCTGGGAGCCGTTGATGCGTTGAGAAAG
ACTGGTAATGAAGCTTTTGAACTGAACCAAGTGAAGAGAGCTTCAACCTC
CTACATGCGTGCTATTCGCTTGTTGGAGAATGCTAATCTTAAGAATGAAT
ACGAGGAAatcgaaatgaaaaaatccgcgCTCAAGTTGTATTTGAATATG
ACGTTAATGGACTTGAAGGAGGCAAAGTCAGGGCGTGCATGTAAACACGC
CCGCAAGGCTCTTGAAATCGAACCGAAGAATGTGAAAGCATTGTACAGGT
TAGCAAGGGCGTTGCACCAGCTTGGTGATTTGGAGAGTGCTAAGAAAGAG
ATTTGGAAAGCTCACAGATATTCTCCTGGTAACGAAGAAGTGATGAAGGA
AATGCGACAACTTGATAACGAACTTGCTCGATACAAACGCAAAGATCAGG
CACTATCAAGGAAAATGTTAAACCTTGATCCAATGCCTAAGAAAGCTGCA
GCACCCAAAAACCCAACACCTGCTCAAAGTCAAATGTTAAAGATGGTTCT
TGATCGGTTGAAATCTTTCAAGAATTCCAGTGATTTACCGGAAATGCGGT
TACCAGATACTCTGACTCAAGAGGAGGTGGATAGTGTGAAGATAGCTGTC
AATGAATtggatttatttttctcttctacTCAGGCTAATGGACAAACAAT
GATTATCGTCTCTAAAACTTCTTTACAAGAGAAATAGATGAACGTTTTGG
ATGATTTGCCAGAAGGATTGGACGATTTACGTATCAGGGAAGGTGGATTC
AACGATGGACATGTGCGCACCAGTGGTATCGATATTCAAAAACTGAATAA
GGGATTGGAAAGTAACTTTGAGATTCAAATGAAGGATGAACAAGACGATG
TACCGCAACCAGAAACAAACGAGAATCAATTCAATCCTCAGGAATTGTTT
CAACAGTTGAATTATGAATGTAATGATACTGAGgTCAGTGATCCGGCTTT
AGAGCACCTGTCACCTTTCGAACGAATGAAACAAACCATGGAGGACATTT
CTCCTGTCGGTGATGGGGGTATCATGAAAATGATCTTGAAGCATGGTGCA
GGTAGTGTGGTGCCACCAAGATCTTTGTGTCGTGTTCATTACAATGGCTA
CTTTGAATTCAATGACGAACCGTTCGATTCCAGTCGATTACGTGGTCGAC
AACATCAATTCAAACTTGGTGAAGGTGAAATTTTGATGGGCTGGGAGATT
GGAATCGGCACCATGAAACGTGGAGAGTTGGCTCGTTTTATCATGACGTC
CCAATACGCGTATGGAAAATATGGGTGTCCACCACGTATACCCAAGGACG
CCACACCCATGTTTGAAATTGAACTGATTAGTTTTGTTGATCAAGGAGCA
GCTGATGATTACGAAAGTTTTACAGAGGAGGAACGAAAGAAGGCGACTTT
TGAAGAGATTCTGGGAGCCGTTGATGCGTTGAGAAAGACTGGTAATGAAG
CTTTTGAACTGAACCAAGTGAAGAGAGCTTCAACCTCCTACATGCGTGCT
ATTCGCTTGTTGGAGAATGCTAATCTTAAGAATGAATACGAGGAAatcga
aatgaaaaaatccgcgCTCAAGTTGTATTTGAATATGACGTTAATGGACT
TGAAGGAGGCAAAGTCAGGGCGTGCATGTAAACACGCCCGCAAGGCTCTT
GAAATCGAACCGAAGAATGTGAAAGCATTGTACAGGTTAGCAAGGGCGTT
GCACCAGCTTGGTGATTTGGAGAGTGCTAAGAAAGAGATTTGGAAAGCTC
ACAGATATTCTCCTGGTAACGAAGAAGTGATGAAGGAAATGCGACAACTT
GATAACGAACTTGCTCGATACAAACGCAAAGATCAGGCACTATCAAGGAA
AATGTTAAACCTTGATCCAATGCCTAAGAAAGCTGCAGCACCCAAAAACC
CAACACCTGCTCAAAGTCAAATGTTAAAGATGGTTCTTGATCGGTTGAAA
TCTTTCAAGAATTCCAGTGATTTACCGGAAATGCGGTTACCAGATACTCT
GACTCAAGAGGAGGTGGATAGTGTGAAGATAGCTGTCAATGAATtggatt
tatttttctcttctacTCAGGCTAATGGACAAACAATGATTATCGTCTCT
AAAACTTCTTTACAAGAGAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011093XLOC_011093Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019704-proteinTCONS_00019704-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019704-exon-sc0000335-1491911889:6171..6313TCONS_00019704-exon-sc0000335-1491911889:6171..6313Clytia hemisphaericaexon
TCONS_00019704-exon-sc0000335-1510915933:6171..6313TCONS_00019704-exon-sc0000335-1510915933:6171..6313Clytia hemisphaericaexon
TCONS_00019704-exon-sc0000335-1575043694:6171..6313TCONS_00019704-exon-sc0000335-1575043694:6171..6313Clytia hemisphaericaexon
TCONS_00019704-exon-sc0000335-1491911889:6484..6573TCONS_00019704-exon-sc0000335-1491911889:6484..6573Clytia hemisphaericaexon
TCONS_00019704-exon-sc0000335-1510915933:6484..6573TCONS_00019704-exon-sc0000335-1510915933:6484..6573Clytia hemisphaericaexon
TCONS_00019704-exon-sc0000335-1575043694:6484..6573TCONS_00019704-exon-sc0000335-1575043694:6484..6573Clytia hemisphaericaexon
TCONS_00019704-exon-sc0000335-1491911889:6813..6876TCONS_00019704-exon-sc0000335-1491911889:6813..6876Clytia hemisphaericaexon
TCONS_00019704-exon-sc0000335-1510915933:6813..6876TCONS_00019704-exon-sc0000335-1510915933:6813..6876Clytia hemisphaericaexon
TCONS_00019704-exon-sc0000335-1575043694:6813..6876TCONS_00019704-exon-sc0000335-1575043694:6813..6876Clytia hemisphaericaexon
TCONS_00019704-exon-sc0000335-1491911889:7269..7434TCONS_00019704-exon-sc0000335-1491911889:7269..7434Clytia hemisphaericaexon
TCONS_00019704-exon-sc0000335-1510915933:7269..7434TCONS_00019704-exon-sc0000335-1510915933:7269..7434Clytia hemisphaericaexon
TCONS_00019704-exon-sc0000335-1575043694:7269..7434TCONS_00019704-exon-sc0000335-1575043694:7269..7434Clytia hemisphaericaexon
TCONS_00019704-exon-sc0000335-1491911889:8097..8372TCONS_00019704-exon-sc0000335-1491911889:8097..8372Clytia hemisphaericaexon
TCONS_00019704-exon-sc0000335-1510915933:8097..8372TCONS_00019704-exon-sc0000335-1510915933:8097..8372Clytia hemisphaericaexon
TCONS_00019704-exon-sc0000335-1575043694:8097..8372TCONS_00019704-exon-sc0000335-1575043694:8097..8372Clytia hemisphaericaexon
TCONS_00019704-exon-sc0000335-1491911889:8523..10056TCONS_00019704-exon-sc0000335-1491911889:8523..10056Clytia hemisphaericaexon
TCONS_00019704-exon-sc0000335-1510915933:8523..10056TCONS_00019704-exon-sc0000335-1510915933:8523..10056Clytia hemisphaericaexon
TCONS_00019704-exon-sc0000335-1575043694:8523..10056TCONS_00019704-exon-sc0000335-1575043694:8523..10056Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000335supercontigsc0000335:6171..10056 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
69.4535	58.7972	35.7813	32.3363	46.2292	33.0724	38.1085	44.1259	31.4266	29.9481	22.084	18.6437	12.7047	11.8265	17.0382	20.4444	42.744	31.3415	5.99254	7.61735	25.5442	23.6041	43.9995	40.7415	23.094	25.2866	9.48252	6.83566	24.2737	28.6706
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR001179PPIase_FKBP_dom
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00019704 vs. Swiss-Prot (Human)
Match: FKBP6 (Inactive peptidyl-prolyl cis-trans isomerase FKBP6 OS=Homo sapiens GN=FKBP6 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.952e-48
Identity = 103/299 (34.45%), Postives = 167/299 (55.85%), Query Frame = 2 
Query:  767 SPFERMKQTMEDISPVGDGGIMKMILKHGAGSVVPPRSLCRVHYNGYFEFNDEPFDSSRLRGRQHQFKLGEGEILMGWEIGIGTMKRGELARFIMTSQYAYGKYGCPPRIPKDATPMFEIELISFVDQGAADDYESFTEEERKKATFEEILGAVDALRKTGNEAFELNQVKRASTSYMRAIRLLENANLKNEYEEIEMKKSALKLYLNMTLMDLKEAKSGRACKHARKALEIEPKNVKALYRLARALHQLGDLESAKKEIWKAHRYSPGNEEVMKEMRQLDNELARYKRKDQALSRKML 1663
            S +ER+ Q M DIS  GD G++K +++ GAG +V P +   V Y+GY E  D PFDS+  R      KLGE   L G E+G+ +M+RGELARF+    YAYG  GCPP IP + T +FEIEL+ F+D   +D + + + E++ +   +++L      R+ GN  F  N+   A   Y RA+ LL   +   E + + ++ + L + LN++   LK  +   A  +  +AL I+ KN KAL+R  +A   L + + A+  + +A +  P N ++  E+++L +    Y  K++ +  +M 
Sbjct:   20 SLYERLSQRMLDIS--GDRGVLKDVIREGAGDLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLDFLDCAESDKFCALSAEQQDQFPLQKVLKVAATEREFGNYLFRQNRFYDAKVRYKRALLLLRRRSAPPEEQHL-VEAAKLPVLLNLSFTYLKLDRPTIALCYGEQALIIDQKNAKALFRCGQACLLLTEYQKARDFLVRAQKEQPFNHDINNELKKLASCYRDYVDKEKEMWHRMF 315
The following BLAST results are available for this feature:
BLAST of TCONS_00019704 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FKBP63.952e-4834.45Inactive peptidyl-prolyl cis-trans isomerase FKBP6... [more]
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