TCONS_00019674 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019674
Unique NameTCONS_00019674
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length491

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019674 ID=TCONS_00019674|Name=TCONS_00019674|organism=Clytia hemisphaerica|type=transcript|length=491bp
aacTGTTTACCTTATACAAGTGTCCGTGCGGCAAACTTAAAAGTACATAT
GCGTTCGTTAGGTTTTGAATTCGAGACCTGATGATGTATCTCCATTTTCT
AGTTTGCCGTGCAGACACTTATATAGCTAACAGCCATACAGAAAAAAACT
CAGCATGCGTCACTGCGGCCGATCAGCTGATGATTCGACAACTAACGTGT
TGGTATCACCTAACGTTTCGGTATCATCTACGATTAAGCCCCCGTCGTGG
ATTGTTTACCCCCTATTCATTCAGCCAAAGCCATAGCCAAAGCCAAAGCC
TTTTACTGCCTAATTTATTTAATTCATAATTTATTATAATTGTTTGATTA
TAAATTGAAATCTCTACGAAATTTCTGTTGCATTTTACATCCCTAATACA
CCGTTTAATAAGATGATATCTATCGAAGCTTATCGGATTTCGATCGGCAA
CTTTGATTCTACCAGGCAATTTAACCTTCGTTCTATATATA
Run BLAST on NCBI

transcript from alignment at sc0000333:122501..125194-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019674 ID=TCONS_00019674|Name=TCONS_00019674|organism=Clytia hemisphaerica|type=transcript|length=2694bp|location=Sequence derived from alignment at sc0000333:122501..125194- (Clytia hemisphaerica)
AACTGTTTACCTTATACAAGTGTCCGTGCGGCAAACTTAAAAGTACATAT
GCGTTCGTTAGGTTTTGAATTCGAGACCTGATGATGTATCTCCATTTTCT
AGTTTGCCGTGCAGACACTTATATAGCTAACAGCCATACAGAAAAAAACT
CAGCATGCGTCACTGCGGCCGATCAGCTGATGTAAGGTATTTTTCATTAT
GTAATTTCTGCTGGACTACATTATTATTTAACAGAACGTCCTTTTTGAAA
AAATATCTATTTTGTGACTATGTTTTGATAATAGCAGAGTCTGTTTCCAA
TGCCCATAATAGTGACTTAAGATTTAATCAATCTTTTGCTCAAATACACA
ATACTATCAATTTTTTCGTGAAATACTGCCATACTGTTAGAAAAAAAAAA
GCTTGGCCCTGGTACTAGCTCTTGGAGATCCCTTTTGAAATTTTGTATAC
CTTTGCATTATGTGATTATGTTAACCCTTTGAGTGCCAGGGTCCTTTTTT
CTAAGTTTTTTTAAAAAAATCGCTAGTTCAAACTTTAAGGGCTTATATCT
CCTGATCTAGAAGGAATTAGAAGCTCGTATATAGCTCGTTGGNNNNNNNN
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ATAACGATTTCTAACTCAAACTGGGCATTACAGGAGGGCTTCGCCCTCCT
ATATAGCCCATGTCGTATATATACGACATCGGCACTTAAAGGGTTAAAAG
TCGCAAAGTTTCATGAGATTTAAAAAAAAATTAAGGGAATTATAAGCAAA
AAACTGACAGGGTGGTGTAAACCCCCCCCCCTCCGATATAAATACCAAAT
TTTATTCAATTTATTACTCTTCCTTTATTTTTAGGATTCGACAACTAACG
TGTTGGTATCACCTAACGTTTCGGTATCATCTACGATTAAGCCCCCGTCG
TGGATTGTTTACCCCCTATTCATTCAGCCAAAGCCATAGCCAAAGCCAAA
GCCTTTTACTGCCTAATTTATTTAATTCATAATTTATTATAATTGTTTGA
TTATAAATTGAAATCTCTACGAAATTTCTGTTGCATTTTACATCCCTAAT
ACACCGTTTAATAAGATGATATCTATCGAAGCTTATCGGATTTCGATCGG
CAACTTTGATTCTACCAGGCAATTTAACCTTCGTTCTATATATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011075XLOC_011075Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019674-exon-sc0000333-1575043694:125014..125194TCONS_00019674-exon-sc0000333-1575043694:125014..125194Clytia hemisphaericaexon
TCONS_00019674-exon-sc0000333-1575043694:122501..122810TCONS_00019674-exon-sc0000333-1575043694:122501..122810Clytia hemisphaericaexon
TCONS_00019674-exon-sc0000333-1510915933:125014..125194TCONS_00019674-exon-sc0000333-1510915933:125014..125194Clytia hemisphaericaexon
TCONS_00019674-exon-sc0000333-1510915933:122501..122810TCONS_00019674-exon-sc0000333-1510915933:122501..122810Clytia hemisphaericaexon
TCONS_00019674-exon-sc0000333-1491911889:125014..125194TCONS_00019674-exon-sc0000333-1491911889:125014..125194Clytia hemisphaericaexon
TCONS_00019674-exon-sc0000333-1491911889:122501..122810TCONS_00019674-exon-sc0000333-1491911889:122501..122810Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000333supercontigsc0000333:122501..125194 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.945988	1.296	0.629628	1.87744	7.17853	5.49673	3.84682	5.07986	2.0313	1.40024	1.56328	1.47595	1.74955	0.699911	0.73729	0.367171	0.476688	1.15287	1.20745	2.40372	0.74269	1.13582	0.537956	1.42747	2.78014	2.9766	1.94004	2.617	3.9106	3.51489
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019674 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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