TCONS_00019639 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019639
Unique NameTCONS_00019639
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1073

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019639 ID=TCONS_00019639|Name=TCONS_00019639|organism=Clytia hemisphaerica|type=transcript|length=1073bp
CAAAAAAAAAGACAGAAAGCGTGTACTTTGAATCCATTTTAAACATCGAT
TGCGTCCAACCTCAGTGATTTGATTCACCTTTACCATGAAATCACATCTT
ATATTCCTGGCAATTTTGCTGCCAACCTTGGTAATATCAGACGATATCAG
TCTACTGAAATCCCAGATTCAACAACTCCAAACTGAACTTGCGAAAGAAA
AAGCAGAAATCAAGGTTTTGCAATCAAAAGACAAAGCACGAAACGGAATT
TGTGGTATCAAATCAAACCCATGTGGATCGTGTCTATGTGTTGAAGACTA
TAATACGCATCAGAAGTATTTCTGTGATTGTCGCGCAAAACCGGCCAGAA
AGGACTGTCGAGAGCATTATGACCAAGGCGAAAGAACCAACGGTTTGTAC
CAGATTATATTATTTGAATTAAATATTATCCAAGTTTTCTGTGACCATGA
AACTTCTCCTGGCGGTTGGACGGTCATTCAACGCCGTATGGATGGCTCGG
AGAATTTCTATCGCTCTTGGGAAGAATATAAAAACGGCTTTGGACAACTT
CATCGGGAGCATTGGCTTGGAAATGAACATATATCAACCCTGACAGCCCA
AGCTGCTATTACTGGATCGGAACTCAGAATTGATATGAAATTTGCTAAAC
GACAAACCGAATACAGTATGTTGTATGGTAATTTTGATGTAGGGCGTGAG
AGCACGGGCTACCAACTTTACGTCGTTGACCGAAAGTCAAGTTTTGGTAT
GGAGTTGCACAATGGTATGAAATTCAGCACCTATGATAAAGATCAGGACC
CAAATCCCGATTTCAACTGCGCTGTCACATTGCGTGCCGGCTGGTGGTTC
CATGACTGTGAAAGCGATGCCAACTTGAATCAATCATGTAATTTAAACGG
TCAATATGACATGCTCGAAATTTATTATGATTTGAGAAATGTTTTCTCGT
GGAAAGCCAATTACAGGTTGGGAGTATCAGAAATGAAAGTCAGACGAAAA
TAATATATACTTGTCAAATTTAACTTTATTGTAAAAATTGTATGGTTTTT
GTGACATTTCACCCTGATTGAGC
Run BLAST on NCBI

protein sequence of TCONS_00019639-protein

>TCONS_00019639-protein ID=TCONS_00019639-protein|Name=TCONS_00019639-protein|organism=Clytia hemisphaerica|type=polypeptide|length=305bp
MKSHLIFLAILLPTLVISDDISLLKSQIQQLQTELAKEKAEIKVLQSKDK
ARNGICGIKSNPCGSCLCVEDYNTHQKYFCDCRAKPARKDCREHYDQGER
TNGLYQIILFELNIIQVFCDHETSPGGWTVIQRRMDGSENFYRSWEEYKN
GFGQLHREHWLGNEHISTLTAQAAITGSELRIDMKFAKRQTEYSMLYGNF
DVGRESTGYQLYVVDRKSSFGMELHNGMKFSTYDKDQDPNPDFNCAVTLR
AGWWFHDCESDANLNQSCNLNGQYDMLEIYYDLRNVFSWKANYRLGVSEM
KVRRK
Run BLAST on NCBI

transcript from alignment at sc0000332:61406..62478

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019639 ID=TCONS_00019639|Name=TCONS_00019639|organism=Clytia hemisphaerica|type=transcript|length=1073bp|location=Sequence derived from alignment at sc0000332:61406..62478 (Clytia hemisphaerica)
GCTCAATCAGGGTGAAATGTCACAAAAACCATACAATTTTTACAATAAAG
TTAAATTTGACAAGTATATATTATTTTCGTCTGACTTTCATTTCTGATAC
TCCCAACCTGTAATTGGCTTTCCACGAGAAAACATTTCTCAAATCATAAT
AAATTTCGAGCATGTCATATTGACCGTTTAAATTACATGATTGATTCAAG
TTGGCATCGCTTTCACAGTCATGGAACCACCAGCCGGCACGCAATGTGAC
AGCGCAGTTGAAATCGGGATTTGGGTCCTGATCTTTATCATAGGTGCTGA
ATTTCATACCATTGTGCAACTCCATACCAAAACTTGACTTTCGGTCAACG
ACGTAAAGTTGGTAGCCCGTGCTCTCACGCCCTACATCAAAATTACCATA
CAACATACTGTATTCGGTTTGTCGTTTAGCAAATTTCATATCAATTCTGA
GTTCCGATCCAGTAATAGCAGCTTGGGCTGTCAGGGTTGATATATGTTCA
TTTCCAAGCCAATGCTCCCGATGAAGTTGTCCAAAGCCGTTTTTATATTC
TTCCCAAGAGCGATAGAAATTCTCCGAGCCATCCATACGGCGTTGAATGA
CCGTCCAACCGCCAGGAGAAGTTTCATGGTCACAGAAAACTTGGATAATA
TTTAATTCAAATAATATAATCTGGTACAAACCGTTGGTTCTTTCGCCTTG
GTCATAATGCTCTCGACAGTCCTTTCTGGCCGGTTTTGCGCGACAATCAC
AGAAATACTTCTGATGCGTATTATAGTCTTCAACACATAGACACGATCCA
CATGGGTTTGATTTGATACCACAAATTCCGTTTCGTGCTTTGTCTTTTGA
TTGCAAAACCTTGATTTCTGCTTTTTCTTTCGCAAGTTCAGTTTGGAGTT
GTTGAATCTGGGATTTCAGTAGACTGATATCGTCTGATATTACCAAGGTT
GGCAGCAAAATTGCCAGGAATATAAGATGTGATTTCATGGTAAAGGTGAA
TCAAATCACTGAGGTTGGACGCAATCGATGTTTAAAATGGATTCAAAGTA
CACGCTTTCTGTCTTTTTTTTTG

Coding sequence (CDS) from alignment at sc0000332:61406..62478

>TCONS_00019639 ID=TCONS_00019639|Name=TCONS_00019639|organism=Clytia hemisphaerica|type=CDS|length=918bp|location=Sequence derived from alignment at sc0000332:61406..62478 (Clytia hemisphaerica)
TTATTTTCGTCTGACTTTCATTTCTGATACTCCCAACCTGTAATTGGCTT
TCCACGAGAAAACATTTCTCAAATCATAATAAATTTCGAGCATGTCATAT
TGACCGTTTAAATTACATGATTGATTCAAGTTGGCATCGCTTTCACAGTC
ATGGAACCACCAGCCGGCACGCAATGTGACAGCGCAGTTGAAATCGGGAT
TTGGGTCCTGATCTTTATCATAGGTGCTGAATTTCATACCATTGTGCAAC
TCCATACCAAAACTTGACTTTCGGTCAACGACGTAAAGTTGGTAGCCCGT
GCTCTCACGCCCTACATCAAAATTACCATACAACATACTGTATTCGGTTT
GTCGTTTAGCAAATTTCATATCAATTCTGAGTTCCGATCCAGTAATAGCA
GCTTGGGCTGTCAGGGTTGATATATGTTCATTTCCAAGCCAATGCTCCCG
ATGAAGTTGTCCAAAGCCGTTTTTATATTCTTCCCAAGAGCGATAGAAAT
TCTCCGAGCCATCCATACGGCGTTGAATGACCGTCCAACCGCCAGGAGAA
GTTTCATGGTCACAGAAAACTTGGATAATATTTAATTCAAATAATATAAT
CTGGTACAAACCGTTGGTTCTTTCGCCTTGGTCATAATGCTCTCGACAGT
CCTTTCTGGCCGGTTTTGCGCGACAATCACAGAAATACTTCTGATGCGTA
TTATAGTCTTCAACACATAGACACGATCCACATGGGTTTGATTTGATACC
ACAAATTCCGTTTCGTGCTTTGTCTTTTGATTGCAAAACCTTGATTTCTG
CTTTTTCTTTCGCAAGTTCAGTTTGGAGTTGTTGAATCTGGGATTTCAGT
AGACTGATATCGTCTGATATTACCAAGGTTGGCAGCAAAATTGCCAGGAA
TATAAGATGTGATTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011050XLOC_011050Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019639-proteinTCONS_00019639-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019639-exon-sc0000332-1491911889:61406..62478TCONS_00019639-exon-sc0000332-1491911889:61406..62478Clytia hemisphaericaexon
TCONS_00019639-exon-sc0000332-1510915933:61406..62478TCONS_00019639-exon-sc0000332-1510915933:61406..62478Clytia hemisphaericaexon
TCONS_00019639-exon-sc0000332-1575043694:61406..62478TCONS_00019639-exon-sc0000332-1575043694:61406..62478Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000332supercontigsc0000332:61406..62478 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.164249	0.120126	1.20881	1.41006	0.442997	0.175031	0.369544	0.296539	0.138409	0.171442	0.249609	0.382861	7.23693	6.94841	0.0233165	0.0250221	6.41165	4.73923	19.6425	21.468	16.6348	19.4617	1.83616	3.03905	6.26031	9.12834	0.394131	0.360538	0.729213	0.696519
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014716Fibrinogen_a/b/g_C_1
IPR014715Fibrinogen_a/b/g_C_2
Blast
[Close]
BLAST of TCONS_00019639 vs. Swiss-Prot (Human)
Match: FBCD1 (Fibrinogen C domain-containing protein 1 OS=Homo sapiens GN=FIBCD1 PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 2.609e-39
Identity = 93/235 (39.57%), Postives = 126/235 (53.62%), Query Frame = 2 
Query:  323 CDCRAKPARKDCREHYDQGERTNGLYQIILFELNI-IQVFCDHETSPGGWTVIQRRMDGSENFYRSWEEYKNGFGQLHREHWLGNEHISTLTAQAAITGSELRIDMKFAKRQTEYSMLYGNFDVG-----RESTGYQLYVVDRKSSFGMEL--HNGMKFSTYDKDQDPNPDFNCAVTLRAGWWFHDCESDANLNQSCNLNGQY--DMLEIYYDLRNVFSWKA-NYRLGVSEMKVR 994
            C   ++P  +DC +    G++ +G+Y +         QV+CD  T  GGWTV QRR DGS NF+R W+ Y++GFG+L  EHWLG + I  LT QAA    EL +D++  +  T Y+  YG+F VG      E  GY L V D   + G  L  H+GM+F+T D+D D + + NCA   R  WW+ +C        + NLNGQY       Y D     SW    Y L  SEMK+R
Sbjct:  235 CATGSRP--RDCLDVLLSGQQDDGVYSVFPTHYPAGFQVYCDMRTDGGGWTVFQRREDGSVNFFRGWDAYRDGFGRLTGEHWLGLKRIHALTTQAAY---ELHVDLEDFENGTAYAR-YGSFGVGLFSVDPEEDGYPLTVADYSGTAGDSLLKHSGMRFTTKDRDSD-HSENNCAAFYRGAWWYRNC-------HTSNLNGQYLRGAHASYADGVEWSSWTGWQYSLKFSEMKIR 455
The following BLAST results are available for this feature:
BLAST of TCONS_00019639 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FBCD12.609e-3939.57Fibrinogen C domain-containing protein 1 OS=Homo s... [more]
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