TCONS_00019626 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019626
Unique NameTCONS_00019626
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1980

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019626 ID=TCONS_00019626|Name=TCONS_00019626|organism=Clytia hemisphaerica|type=transcript|length=1980bp
TACACGTTTAGTTGTTGCACCAGAAGATCGAACATCATACTAAATCATAA
TTTCTGCTTATTCGAATGGAGTTAAAACTTTTCGGTGGTGGTGGTAAGCT
TGGTTCGTACCAGGTTGACATCGAAAGTGAAGCCGCGAAGAtcaccaaaa
tcaaaatctcaaagcaaaaaaattattgacaaCTCATCCAACACTTTGAA
GAACCTTATCGAAACTATGGCATACATCAAGCTTCTTTTAGGATTATTAT
TTGCAGCAATCGTATCTGCTGACCAATGTACCAGCCCAACAGTTCATGCT
TCAACATACACATCCAAAAGTGTTGCACTCTCTGTCGAAACAGCCTATCT
TTCCGAACTCACTGTACAATGTAGTGAAGGTGTCTCAACATTAGATTTAT
ATGCCGAAATTGAAGGTGTCATCGTTCCAGTCGCCAGCATCCCAGACAAA
GAAGGAACTTATCAAATCAGCTGGGCTAAAGACCACAAGAAAGCTACCAC
TGGCAAAATTAACATCAAAGTTTTCAACAATGAAGGATACAATGCTTACA
GAAAGGCACAACGAAATGAAGAAGATGTATCGTCTGTTAAAGCTTTATTC
ACTGTCACCGTCAACCACCCTGGTGTCTCACGAGAGGGATTATTCGTTCA
AACTGAATTCTTAGCTGTTGTTGCCGCTCTTCTGTTATTCTGGACCGCCA
ACTCAATGCGAAACCAAATCATGGAATAAATTATTACAAATaatcaattt
ttcattgttacatttttgcaaaatttaggttttttttATTGTGCTTGTAG
GAATGTTTTTTACTACTACTAATTTCGATTTTCGTAATTATTTCAAAGCT
ATAGTTTTGACAATTTagaaatacaaaattgaaaaattcgaaATCTTTTT
AGTCAAATCTAATGAAACTCATATGACGAGGGTCTGTTGGAGACCAAAGA
TTTTTCTAAACGTGTAAaaactttcttataaaaagtggaATTCCATTTCG
AAACGAATTgtccttatcggagtttttgatttttctaaaaaagcgatgca
ttgtagGATTGTTTTGGGAGTATTATAATAGAAATATCTTgagaattcct
cgagggaattctatactcgaaacaatcccacaatgcatcgcttttttaga
aaaatcaaaaactccgataaggtctattgtccAATGTAATGTCACAGTTT
TGGTTTAAATCCCATAGATTCTTATAATGACTTGACTTCCTTTTTCTATG
CTGAGCATTCCCTAATCATATACCCACTAATACATATAAACTCTGTTCAT
TTTGTAAAGCGAACAGCCTTCTCGCAGTATGTGTGCCCTGCTGGAGAGTA
TATTATAAAGGTTAAACTTAAAGGATTATAAGGCAGAAAAGTCGCGAGGA
TAGTCCAACTTTAGACGTTTTTTATGTTAGAACAACAAAATGTATAATAA
TTCAAAGCTTCAAGTCATTGGCTTTAAAGTTACTGCTAAAGCAGATTGTA
AGAAATTGATCTAGGCGCTTTGCTACTCAAACTTATTTAACTTCTTAGTA
GTAATCGTTTAGCCATTTTACGAAAAACACTTCAAACCAGTTCAAACCTG
TCACTTATCAGACATCCGAACTTTTCTAGGCAATGTGGCATTCTTGTAGA
AAGCAATTTGAGATATCCAAGgaagtatttttatattttgttagATATGA
TGTCATTCTGTTTTTCGACATGTTAATGGCATCATGTCATTTCTAGACCA
TCACGATGACTGATACAGATGACGTAAACGAGGGATAATACAGAAACTTT
CCAAAACCATCTATCACTTTTATCTTCACGTGCCACGTCCTATCATTGTA
TAAAAACTTGCAATGGTTAATTTCattaattattttgagtgcaatgACTG
CCTCATTTGAAACCATTCCCAGAGTGATTATAAGTCTTAAGTCAAGCGct
acttttatttatatatagAGTAAACTTCTA
Run BLAST on NCBI

protein sequence of TCONS_00019626-protein

>TCONS_00019626-protein ID=TCONS_00019626-protein|Name=TCONS_00019626-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
MAYIKLLLGLLFAAIVSADQCTSPTVHASTYTSKSVALSVETAYLSELTV
QCSEGVSTLDLYAEIEGVIVPVASIPDKEGTYQISWAKDHKKATTGKINI
KVFNNEGYNAYRKAQRNEEDVSSVKALFTVTVNHPGVSREGLFVQTEFLA
VVAALLLFWTANSMRNQIME
Run BLAST on NCBI

transcript from alignment at sc0000332:92321..104721-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019626 ID=TCONS_00019626|Name=TCONS_00019626|organism=Clytia hemisphaerica|type=transcript|length=12401bp|location=Sequence derived from alignment at sc0000332:92321..104721- (Clytia hemisphaerica)
TACACGTTTAGTTGTTGCACCAGAAGATCGAACATCATACTAAATCATAA
TTTCTGCTTATTCGAATGGAGTTAAAACTTTTCGGTGGTGGTGGTAAGCT
TGGTTCGTACCAGGTTGACATCGAAAGTGAAGCCGCGAAGATCACCAAAA
TCAAAATCTCAAAGCAAAAAAATTATTGACAACTCATCCAACACTTTGAA
GAACCTTATCGAAACTATGGCATACATCAAGCTTCTTTTAGGATTATTAT
TTGCAGCAATCGTATCTGGTAAGTTTTTTAAGTCATATTATAGATTCTAT
AGTCTGTATTAATCATTAAAGTAAATGTAGCTACAAGTTTTAACACCCGC
ACCCGGCGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGAAGCAG
AGAAGAGAAGTTGAGAATTTGATTTGGCCGCAAAAGCACACTGATGGGGG
GGGGGGTACTAGGGTTGGCGAATGAAGGGTATGTGCGGACGGGACCTCCG
AAAACTGACCCTTAGAGAGACTGATTTTTGCTGAAAAGGTGACCCTTAGA
GAGACTTTATTACAATTTTTTTTTGATTTTTCAAAAAAGTCATACCCTTA
GAGAGACTTTATTACAATTTTTTCTCTGGAAATCAAAAACAAAAAAATTT
CATAAAAATCCTGAATTTTCCGACACTTAGAGAGACTAATTTAAAACTTT
CTGATTTTTCCGACCCTTAGAGAGACTTTGAAAGGTGAAAAAACCGACCC
TTATCGTCCGCACATACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTGCTCTATTCACATACTGAATTTGA
AAGATCTTCTATGTGGCATTTTTTTGCAAACTTCAAAAAACTGATTTTTG
TCCCGCCTTTGCGGGATTTTGGCCCAAGTGATTGAGTGCAGCATAGTGTA
CAAAGTCCAAATATGCGTTTCCCGTAATTTTTGTATGAAGAGTTAGGTCT
ATACTGAAGGATGGCCCGAGTTTTCGGGCCGCGGGCGGGCCTCATGCGGG
CTGACTTTTGAAATCATGATTTAAACCCGCGTGTAATTTCAGGACTGCAT
TTTTTCAATATTTTCTCTAGAAAAACTTGATTTCACTTAAATATATATTG
CTATTAAACTGGTCCTGGTTTTAAACTTTGAAGCATGGTCCATGAGGAGT
ATGTTAAGTTTATTTAGCAAGATGAACTGGATGAAACACGACGAAATAAA
TTAAAATTAACATCTAGTCACACATTTTCAACGTCATTTTCACGTTTTAA
TTTCATTATGACTGGACAAGCTGGATTAATCAATGGAATCTTCTGACACA
GGCACAAAGGTATAGGTTGAACAGTTTACGTCTTAAGTCGTAGCCCGAAC
GTGGCCGAATGATTCGGGTCGAGTTCGGGCCAAAAGAATTGATAGGGTCT
CTCGGCCCGAACATGGCCCGAAGAGGCCCGAGAATTCTCGGGCCATGTCG
AGGGTCGTACTTGAGATCTCAAGTGCACAACTCAGAAAAAGTCGAGTGCA
GGTTCAAAATTTGACGTTTTGAGGTGCAATTGCAAACAGTTTTTAACCCA
AAGTGCAGATTTCCACTATTTTCTCCTCTAGTGCAACTTAATTTTTTGCC
TTTTCGGGCCAATAGGGCCAATTTCCGAGGTACCACCAGTCTACTAGAAA
GGAGGGAAATGTTACGCCGGAGCTGCGCCAACTTAACTAGGAAAAGTTGA
AGGCAGGAGATCTCAAACCTCAACAAATCTACGCCGGAGATATCCGGTGC
ACAAGCCACAATTTCCAGACTGGCCGAGGTACCAAGAGATCAGGTAACTT
GCATCAGTGGAGGCAAACATGCATAGCCCTCAAATAAATGACCTGTCTGG
TCATTAAAACACAAAGTTAAATAAATGGTAGAGTAGAGCTGCAAGCGGAG
CTGCGTAACGTGAAGTCAGGTAACTTAACTTGTATCAGTGTATCAGTGGA
AGCTAACATGCATAGCCATCAAATGACTGACCAAAGCAGCAAAATTTCAA
AACAAATGAACTACGCAGCCAGTTAGTCACACTAGCGTCCCACCAAAATG
CGTATCACTAAATTGTTTACCTGACTCTCAAGCAAAAAAATGCGCCGCAA
AACTTCTTAAGGGATTCATGAAAAAATAACCCGGCGCTTTTTAATGAAAT
TAACATTTTCAAAAACTTNNAGCCAAGCCAACCTTGAAAACTAATTTGAA
GATCAACTTCCCAAGAAAAAGATCTACAGGGGAGGCGGAACCCACCTAGA
TTCGCGCACCGCCAGATAGGCTATTTCCCGGAAATTTTGCTGGACCTCAA
ACAATGACCCATTTACATTTGTGTGGAATTATTTTTACTTCAGCGTACAA
ACAAGGCCTTAAAAATCGAAGGGCTGTCTCGGGAATTGAATGACAAAATT
TGTTTGGTTGATATTTGGCTGCTGCACGTTCGCAATCTGTCATTTTGTCT
CATTTTAAGTTTTCAAGTTTTAATTGATTGTCTTGGGATCTTGAACTTGA
TTCAGGTAACTCTCATTCTTGTTGTTGCAAATACATCCTGTAGATGACTG
ATGTTGTTTTTTCATAAAGCTTGATTTCCTAGTGTGACTAACTGGCAGCT
CCACTTGCAGCTTGTCCCTACCATTTTTGTTTTGATTTAATTTTGTATTT
TAATGACCAGCCAGGTTATTCATTTGAGGGCTATGCATGTTAGCCTCCAC
TGATGCAAGTTACCCAATCTCACGGTATTTCATTTGTTTTGAGATTTCGC
TGCTTTGATTGGTCAGTCATTTGAAGGCTATGCTAGTTTCCCTCAACTGA
TGCAAGTTACCCGACTTCACGGTATATATAGGTGCACCTTGTCCAGACCA
AAATTTATCAGGTGCTTTCTTCTAGTGCAGAACTTGGTATTTCCCAATTT
TCCCTCAAGTGCAGCCTTGCCATACTCTGCAAACTGGATTTATTCAAGAA
AGTGACATATATACAATAAACAAAACAGTCCCAGTCACGTTAAACTTTCA
GGGGTACCTGGTTTCGCAATTCAGCCAATTTTTATCCCCTTTTCAGTCAA
ACAGTCTGAAAAAGAACCAAAACTCTGTCAGGGGAGCCATATGATCCACA
AACTCGAACATACTCGAACTTGCCAGGAAAAACGTAAATTGGGGCTAGCA
TTGCATTTGTGGAGAGGCTCTTCTTTGAGTGATGGTGGCAATGATAACAG
TTAGCCTAAGTTGTCAGTCAGAGCTATTTATATATAATATGAGAACTATG
AGCTAAATAAATTATTGATGATGCCAAAAAAGAGCCTCACAAACAACTCC
TTGAACAGCCATCAGAGTTATTGTTTTTCTTTCTCTTAGCTTCTGCTTGC
ATTTTAGATTCTTTGTTTATATTACTTTTCTTCAGTTCCAGTGAAATATA
TGAATACATTAGCAGCGAAAAAAATGTCAGGGGAAAGTGACAAAAATTTT
GAGGGGGTGACAAAATTTTCCCCCAAAGGAATTTTTTCCCTGATATTTCT
ACACCTGCTGACCAAAACTTTTACCCAATTTTTTTCCCCCACCCAAAACT
TTTACCCATTTTTTAATCCCCAACCAAGATTTTCCCCCAATTTTTTTATT
TTAACAGAAAAAAAAGATTTACATCATAGTTTTTAATTGTAAACGTTTCC
AGGGATGTTTCTTAACAGAACAAGTAAATTGACTTTCTTTCCAAACAACT
TCTTTTGCCTAATAATCTTATCTTTTTGAAAAGCACGCTTGCTACATCAC
AGATTTTCAAATGTCTATTATTGCGCATTGAGAAAAAAACTTTCAATAAT
ATATAGATCATTTTGATCGTCTCATTCTAATTTTTTTTCAATTGAAATAA
AATATATGGCATAAATTAGAGCTGACGTCCCCTTTAAAGCCTGAAATAGC
ACACATTTGGGGGGATAAATACAGTAGAGCAATATAAATTTGGCGGATGA
CGGAATACATTAAATTTGGCGGATTTCGACCAAATCTGCAAAATTAAGTT
CCTGCCAAAATTTCTTCCTTTAAAAGGTACTAAAAATCTTGATAATTCCA
TCTTATGCTCTATTTTTTTTTGGGAACATTTAATAAAATTGGCTGGGAAA
AGTGACGAATTTGAAATTTTGGTCGGGGCTGGTCGGGGAAAAGTAACGAA
TTTGAAATTTTGGTCAGGGGAAAGTGAAGAAAATGCCTCTAGGTGACAAA
ATTTTTCCCGGACTAAATAAAACTCCAACATTTTTTCCCCGATAAGGTAT
TTTTAGGCATAACTTGGTACTGGTACTGAACTCTAAAAGTTAGGGCATAT
AGTAGGGGAAATTTGTAAAATCGTTCGACTTTTTAAGTCAAAGCACTTGC
TTACATTTTTGGAAAGTTTTTCTTTTCTTTCTTTTCCAATTTGATTTCTC
TACCTAAAGTGAGATCTTGAGCTTCAAAAAGTGAAAAAGGTGGACAAAAT
AGCTGTTTCTGGCTGAAAAACGTTATTTTAAGGGTCAATATCTTGATTTA
GGTACAGAAATCACCTATACTCGATCTTAATTTTTTGAGAGCTTGCCAAA
AAACAACAGGTCTCTCTTTTCTCAAGTTAAGNCAATATATCTCTAATCTT
AATTTTTTGAGAGCTTGCCAAAAACAACAGGTCTCTCTTTTCTCAAGTTA
AGATTTTCATAAAATTTTGACCCTATGTTTTTTGCCTGAGACTGTCATAT
TTGTCCGAAAAACAAATTGGAACCTATTAACCTTATTTTGATTCCCCTAC
CCCTTGCCTTTCCAAAAATGTATAACAAGTGCTTTGACTAAAAAAGTCAA
GCAACCTCAAAAAATCTAATAAATTCTCCCCTACTAATATATTAGTGAGA
GCCACTATGTTCTGAAAACATTCTTCGTGTGCACCACGTTGTTAAAAGCA
AACTAACTTTTTTAAATGATCAATTAGGTCCATAAGATCACAAAATCGAG
TGGTGAGAAAAATTTTGTCCATTTTGCTGGTCCCCATGTGACGTCATCAC
TTTTGCTGGGGCTTGAAAATGAAAGTGAAAATTGGAAGCTCATATTTGGC
TTAAATGAAAGATATTTATCGAAGGATTCCAAAAAATATCACAACATATA
CCTGAAAATCAATATTTGAGAAGCTAATAAGGAAAATAGCTTAAAAAATG
ACGTCATCGATAACGTCATCGACAATCAAAAAATTGCCAAATCGAAAATT
TTTTGCTTCGTTTGAAAGAGGACCATCTAGTGAACAAAAAATATTACTAC
AAAAAAATCTGAATTTTCCCTTATAAGCCCCTGTCAGCAAATTTGTAATT
CATTAAATTTGCCTGGGAAAGGTTAGCTTCGGGCACGCCCAGGAATCTTT
AAAAAGCTTGAGAGTCAAGTCAAACGCATTTCACAGAATAATTTGCTATC
AAGTGAAATTCAAGGTTTTCCGTAGTAATATTTTTTGTTCCCAAGCAGGT
CCTCTTTCAAATGAAACAAAAATTTTCGTTTTCGATGATTTTTTAATTGC
CGATGACGTCATCGATGACGTAATTTTTTGAGCTATTTTCCTTTATAGCT
TCTCAAATATTGATTTTCAGTTATATGTTGTGATATTTTTTGGAATCCTT
GGATAAATATCTTTCATTTGAGCCATATTTGAGCTTCTAATTTTCACTTT
CATTTTCAAGCCCCACCAAAAGTGATGACGTCACATAGGGACCAGCAAAA
TGGTCAAAAATTTTCTCACCACTCGTTTTTGTGATCTTATAGACCTGATT
GATCATTTAAAAAAGTTAGTTTGCTTTTAACAAGTCTGTGCACACGAAGA
ACATTGTAGCTCTCACTATATCCAGCCACTGTCTTTCACTCGGATCATAT
TCTGATCACAGGATGTTTGAAATTTTGAATTTTGAACAATGAATGTTTTA
CAGAGTAAAAAATTTACTACATATTATCAACTGTTGTTGATCAGTTAAAT
ATATTTTCTACAAGTTTTTTTACTTTACCCATATTTAGTCCTGCTTGAGT
TTTTTTCGCTCAACAGTTTTGAAAATTTTATGCAGGTTAAGCCTATATCT
TCCAATGATAAGGTCCATTGTTTAGCTCAACACATTTCACTGGATTTGAT
TTAGCAAATTAAAGAAAGCAGCAAGTAAAATTAAAGGGAGGGCGGTGCCC
CCCAGCAACAGATTTTTGTTGGGGGTGCCAAAATACAAAGGGCGCAAAAA
ACTCCTCTGATTACTACTTACAGCGCCCCTTTGTGCTTTTACACCTTAGA
TATGGCAGTTTTCGGCTAAAAAGAGAGAAAATACCCCAAAATTTTGTTTC
GCTTGCATAATATTTATAAATATATTTTTATTTCAAATCGTAAAATTTAA
AATTTGCCTCCCCGGTTTACTCAAATTATTGTCAACCCACCACGCTACTT
ACTGCTCACAATTCCTTAAAACTAGCAAGTAGCTGTCACTATGAATGCCC
CGCCGATAGCAGATATTAGCCCAGAGGAACTTAGCCATGAAGAGAGCAAG
GGAATCATAATCNNAAAATGTTCTCAGTAAGATCCATACATAACGAAAGT
ATCAATCTAAAAAAAAACTGTTAAATCTACACTTTCTGATGATTCAAAGT
GACCTAAATTAAAATCATTACAGGTTTCGCAACATGTTAAGAACTAGAAT
GATATCAAAGTTAATTTTCTTCAATCACCAGATAAAAATCACTTTTGAAA
ACCCAATCATAATCATAAGAATGTGTATATACTGTGAAACTGAAAGTGCT
TCATTCCCATAAAGAATACATAATGCAGATTAAAGGTGAATTCCAAAATG
AAATTGAATACAATTTCAGTCATTTGATTTGAAATTTAAAAAGTAAGTAA
CTTTGGACTGGTGGCATACTGTAGATATAATTTATTTGTATCAATAGTTA
CTGAAAATTATCTAAAAAAATTTAACAATCTTTAAACGTGTTTCTGCAAA
AAGTTTTCAGTTAGAATAAAATTTCTTCATGGTTACTAAAGATATGAATT
TGATAGTTGCTCTCAAAATTGGCAGTTGAATCAGATACTTTTTATAAAGG
TATTAATTTTCAGGTATTAAAAATTTCCCAGATTTCACAGCCTTTGTTCT
TATTTACGAAAGACCATACAATAAAATCCTAAGAAAATCTGAAATTAGTC
ACCATGAAAGTATTAAAACATAATCTAATCCACCACTGTACACAATTTTT
TCTATTGCTGTAATCCACTTCCACTTCCCTAGCAAGCAAGAAAGAGGAGA
TTCTTCAACGAAATGACTGTTAATACATAAAAATACCAAAACTTATTTTA
TCACTTTTTGAAAATAACTTAATGTGGGAAAACACGAAAATAAGTCCTTA
TTGCGAAAAGCTTAAATTTTGTGGATAGTGGATGCCCAACCGTGAGTATA
AATTAATGGTAGGATAAATTATTATGCGGAATTAATCAATGTGAATGGCT
GAAGAATTGCCAAGTTTAAATAATGCGAATTAGGGCCTAATTAATTAATC
CTGCATTAATTTGTCCTCACATAGATTCATACTCTTAAGGTAATTCCTGC
GAAATATAAATTGATCCAATTAAAGTAGTGCCAGACTTCGTATTTCAACA
AGTGTGTTTGTTTCACTCCCATAAAAACAGATTCATCTTGTCTTAAATCC
ATATGTTTTGAAAATAAAGGCCAAGGGAATTTCAGATACCGTGTCCTGTT
GTAACCACCGTCAACACGGTTAAAAACTTTTCACTTCACAGGTAGGTACA
ACATTGTGTTTGTATTTTATTGGACGTCTGGTTCTAAAAAGTCAAAAAGT
TTGTTCAGTTTTGATTTGNTTGTAACCACCGTCAACACGGTTAAAAACTT
TTCACTTCACAGGTTTTGTCTTTCCACCAAAAATTTCAATTTAATTTCCT
TCAAAATGAAGTCACTATATAGGTAAACAATATGAATTAACGATTAATTT
CCCTTTTGTCTATCTATGCCTTTATAATAGCAGTAGGGTTTCGGTAGAGC
AGCGCATAACACTGTGTGTGTAACACACTGTCATTGAAGATGTCCGTCGT
CCATTCTGACAATCGTATAAGGTTTGATCCAATATCAGTAGTTTGATAGT
GATTCATTCAGTAGCAAACAATGTCCCTCAAGTAAATCCAGTTGAGCAAC
TACGTTAAAAAGATATTAACCAAGCACAAATCTTGTGTGCTGTTTGGTTT
GTTGTTTGTGAAAGCTTTAGCTGTGTGGACTGGCAGTGCAGACGGTACTT
TCGATTTCTCGCTTTCACAAATGCTCTGTGTAAAATGCACGAGAGTTAAA
AAAAATGGCGAGCAGGTCCGCTACGTGAAGCAACAAAAGCCCCTGCGGGG
CAATGACTGTTCATACCATACCATACCATTTTTGCCTAAATACTAACCCC
AGGTAGCATATTCCAAAGAAGCTATTTTTACATTCCACTAGGCTTTTGTA
TTCATTCTTTTAACACTCCTGATCTTTCTCTTTTAGCTGACCAATGTACC
AGCCCAACAGTTCATGCTTCAACATACACATCCAAAAGTGTTGCACTCTC
TGTCGAAACAGCCTATCTTTCCGAACTCACTGTACAATGTAGTGAAGGTG
TCTCAACATTAGATTTATATGCCGAAATTGAAGGTGTCATCGTTCCAGTC
GCCAGCATCCCAGACAAAGAAGGAACTTATCAAGTAAGTAAAGTAAAAAT
TAGATAATCTCTCTTAACAATCTTCATTTATCTTAAACGCTGAAAAAGCT
AAAGCTAGCTTACCATCAGCTTTTGGAGTCGTATCTAATCATCAACCTTT
CTTTCCAGGGTGATTCAAATATCAATGCAGCAGATCCCTCTAGAAACTAA
TCGACTTTCCCTAAACGTATTGTCTTTTCATTTCAGATCAGCTGGGCTAA
AGACCACAAGAAAGCTACCACTGGCAAAATTAACATCAAAGTTTTCAACA
ATGAAGGATACAATGCTTACAGAAAGGTAATGAGCAGTTACTTTTTTGGA
CATAATCCAATTTTGAGATCGACATTTCGCTGCAAATGAAAAAGTTATTT
TTAAATATTTTTATCAGGCACTTAATAACTTAACTGACTCGCAGCTTTTT
ATAAATTGAATGAAAATGAATAGCAATAGGTTCGGTAAAGGAGGTTGGTT
GTCTATTAAAATGTTATTCCCATCCATTTTGATGTGACCCTTAGGCTGTA
ATTGATAATTATGTACAGCTCTCTACACAATAAACTATTTTCAAACTTTG
TAGGCACAACGAAATGAAGAAGATGTATCGTCTGTTAAAGCTTTATTCAC
TGTCACCGTCAACCACCCTGTAAGTTCTGTCAATTTTGTTGTTGAACTTA
TTTGTAATCCGATGTGATAGCATTTGAAATTACAATACTGTTAAAGGTTT
TGTTTTTAAATAAGACTGACATCGTTTGCTTACTCATCAATTTTAATTCA
CAACCTTTTTCACATTGAATTGACACGGATGTGGAGCAAGATTGGTCAAA
AAGAGAAAAAGAAAAACATTTTTTTGCTTTTATCAGCACAACATAACAAT
AGCCAGACACTGTCCTGATATAAAATATGTGTCTGATATGAAACGGGAAC
ACTTATGTAAAAGTGAAACCTTTTAAGTCCGTCTCAAAACGATCTTAGTG
TAAACTGGTGGAAACAAAACATTTCCTTATTTGATGATACTTTACTCATG
AATATCTTTTCAACAGCCTCAGAATGGCTATTTTATTCAAATTTTATCGA
AAAGTTACAGGCTTTTTTTGTTTCCGCTGCGAATTATGTTCTAAACAGGC
TTTAGCCATCATCTTGGTGAGACCTTTGAAAATTTCGTTCTTGACTCAGA
TTTTTAAATAGATTTCTTCAACTATCACAAGTACTATAAGTGATGTTTTG
AAGGAGATTGGTGATTAATAATTATCTTTTTCTTTTTAACAGGGTGTCTC
ACGAGAGGGATTATTCGTTCAAACTGAATTCTTAGCTGTTGTTGCCGCTC
TTCTGTTATTCTGGACCGCCAACTCAATGCGAAACCAAATCATGGAATAA
ATTATTACAAATAATCAATTTTTCATTGTTACATTTTTGCAAAATTTAGG
TTTTTTTTATTGTGCTTGTAGGAATGTTTTTTACTACTACTAATTTCGAT
TTTCGTAATTATTTCAAAGCTATAGTTTTGACAATTTAGAAATACAAAAT
TGAAAAATTCGAAATCTTTTTAGTCAAATCTAATGAAACTCATATGACGA
GGGTCTGTTGGAGACCAAAGATTTTTCTAAACGTGTAAAAACTTTCTTAT
AAAAAGTGGAATTCCATTTCGAAACGAATTGTCCTTATCGGAGTTTTTGA
TTTTTCTAAAAAAGCGATGCATTGTAGGATTGTTTTGGGAGTATTATAAT
AGAAATATCTTGAGAATTCCTCGAGGGAATTCTATACTCGAAACAATCCC
ACAATGCATCGCTTTTTTAGAAAAATCAAAAACTCCGATAAGGTCTATTG
TCCAATGTAATGTCACAGTTTTGGTTTAAATCCCATAGATTCTTATAATG
ACTTGACTTCCTTTTTCTATGCTGAGCATTCCCTAATCATATACCCACTA
ATACATATAAACTCTGTTCATTTTGTAAAGCGAACAGCCTTCTCGCAGTA
TGTGTGCCCTGCTGGAGAGTATATTATAAAGGTTAAACTTAAAGGATTAT
AAGGCAGAAAAGTCGCGAGGATAGTCCAACTTTAGACGTTTTTTATGTTA
GAACAACAAAATGTATAATAATTCAAAGCTTCAAGTCATTGGCTTTAAAG
TTACTGCTAAAGCAGATTGTAAGAAATTGATCTAGGCGCTTTGCTACTCA
AACTTATTTAACTTCTTAGTAGTAATCGTTTAGCCATTTTACGAAAAACA
CTTCAAACCAGTTCAAACCTGTCACTTATCAGACATCCGAACTTTTCTAG
GCAATGTGGCATTCTTGTAGAAAGCAATTTGAGATATCCAAGGAAGTATT
TTTATATTTTGTTAGATATGATGTCATTCTGTTTTTCGACATGTTAATGG
CATCATGTCATTTCTAGACCATCACGATGACTGATACAGATGACGTAAAC
GAGGGATAATACAGAAACTTTCCAAAACCATCTATCACTTTTATCTTCAC
GTGCCACGTCCTATCATTGTATAAAAACTTGCAATGGTTAATTTCATTAA
TTATTTTGAGTGCAATGACTGCCTCATTTGAAACCATTCCCAGAGTGATT
ATAAGTCTTAAGTCAAGCGCTACTTTTATTTATATATAGAGTAAACTTCT
A

Coding sequence (CDS) from alignment at sc0000332:92321..104721-

>TCONS_00019626 ID=TCONS_00019626|Name=TCONS_00019626|organism=Clytia hemisphaerica|type=CDS|length=2565bp|location=Sequence derived from alignment at sc0000332:92321..104721- (Clytia hemisphaerica)
GGTGTCTCACGAGAGGGATTATTCGTTCAAACTGAATTCTTAGCTGTTGT
TGCCGCTCTTCTGTTATTCTGGACCGCCAACTCAATGCGAAACCAAATCA
TGGAATAAGCACAACGAAATGAAGAAGATGTATCGTCTGTTAAAGCTTTA
TTCACTGTCACCGTCAACCACCCTATCAGCTGGGCTAAAGACCACAAGAA
AGCTACCACTGGCAAAATTAACATCAAAGTTTTCAACAATGAAGGATACA
ATGCTTACAGAAAGCTGACCAATGTACCAGCCCAACAGTTCATGCTTCAA
CATACACATCCAAAAGTGTTGCACTCTCTGTCGAAACAGCCTATCTTTCC
GAACTCACTGTACAATGTAGTGAAGGTGTCTCAACATTAGATTTATATGC
CGAAATTGAAGGTGTCATCGTTCCAGTCGCCAGCATCCCAGACAAAGAAG
GAACTTATCAAATGGCATACATCAAGCTTCTTTTAGGATTATTATTTGCA
GCAATCGTATCTGGGTGTCTCACGAGAGGGATTATTCGTTCAAACTGAAT
TCTTAGCTGTTGTTGCCGCTCTTCTGTTATTCTGGACCGCCAACTCAATG
CGAAACCAAATCATGGAATAAGCACAACGAAATGAAGAAGATGTATCGTC
TGTTAAAGCTTTATTCACTGTCACCGTCAACCACCCTATCAGCTGGGCTA
AAGACCACAAGAAAGCTACCACTGGCAAAATTAACATCAAAGTTTTCAAC
AATGAAGGATACAATGCTTACAGAAAGCTGACCAATGTACCAGCCCAACA
GTTCATGCTTCAACATACACATCCAAAAGTGTTGCACTCTCTGTCGAAAC
AGCCTATCTTTCCGAACTCACTGTACAATGTAGTGAAGGTGTCTCAACAT
TAGATTTATATGCCGAAATTGAAGGTGTCATCGTTCCAGTCGCCAGCATC
CCAGACAAAGAAGGAACTTATCAAATGGCATACATCAAGCTTCTTTTAGG
ATTATTATTTGCAGCAATCGTATCTGGGTGTCTCACGAGAGGGATTATTC
GTTCAAACTGAATTCTTAGCTGTTGTTGCCGCTCTTCTGTTATTCTGGAC
CGCCAACTCAATGCGAAACCAAATCATGGAATAAGCACAACGAAATGAAG
AAGATGTATCGTCTGTTAAAGCTTTATTCACTGTCACCGTCAACCACCCT
ATCAGCTGGGCTAAAGACCACAAGAAAGCTACCACTGGCAAAATTAACAT
CAAAGTTTTCAACAATGAAGGATACAATGCTTACAGAAAGCTGACCAATG
TACCAGCCCAACAGTTCATGCTTCAACATACACATCCAAAAGTGTTGCAC
TCTCTGTCGAAACAGCCTATCTTTCCGAACTCACTGTACAATGTAGTGAA
GGTGTCTCAACATTAGATTTATATGCCGAAATTGAAGGTGTCATCGTTCC
AGTCGCCAGCATCCCAGACAAAGAAGGAACTTATCAAATGGCATACATCA
AGCTTCTTTTAGGATTATTATTTGCAGCAATCGTATCTGGGTGTCTCACG
AGAGGGATTATTCGTTCAAACTGAATTCTTAGCTGTTGTTGCCGCTCTTC
TGTTATTCTGGACCGCCAACTCAATGCGAAACCAAATCATGGAATAAGCA
CAACGAAATGAAGAAGATGTATCGTCTGTTAAAGCTTTATTCACTGTCAC
CGTCAACCACCCTATCAGCTGGGCTAAAGACCACAAGAAAGCTACCACTG
GCAAAATTAACATCAAAGTTTTCAACAATGAAGGATACAATGCTTACAGA
AAGCTGACCAATGTACCAGCCCAACAGTTCATGCTTCAACATACACATCC
AAAAGTGTTGCACTCTCTGTCGAAACAGCCTATCTTTCCGAACTCACTGT
ACAATGTAGTGAAGGTGTCTCAACATTAGATTTATATGCCGAAATTGAAG
GTGTCATCGTTCCAGTCGCCAGCATCCCAGACAAAGAAGGAACTTATCAA
ATGGCATACATCAAGCTTCTTTTAGGATTATTATTTGCAGCAATCGTATC
TGGGTGTCTCACGAGAGGGATTATTCGTTCAAACTGAATTCTTAGCTGTT
GTTGCCGCTCTTCTGTTATTCTGGACCGCCAACTCAATGCGAAACCAAAT
CATGGAATAAGCACAACGAAATGAAGAAGATGTATCGTCTGTTAAAGCTT
TATTCACTGTCACCGTCAACCACCCTATCAGCTGGGCTAAAGACCACAAG
AAAGCTACCACTGGCAAAATTAACATCAAAGTTTTCAACAATGAAGGATA
CAATGCTTACAGAAAGCTGACCAATGTACCAGCCCAACAGTTCATGCTTC
AACATACACATCCAAAAGTGTTGCACTCTCTGTCGAAACAGCCTATCTTT
CCGAACTCACTGTACAATGTAGTGAAGGTGTCTCAACATTAGATTTATAT
GCCGAAATTGAAGGTGTCATCGTTCCAGTCGCCAGCATCCCAGACAAAGA
AGGAACTTATCAAATGGCATACATCAAGCTTCTTTTAGGATTATTATTTG
CAGCAATCGTATCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011041XLOC_011041Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019626-exon-sc0000332-1575043694:104454..104721TCONS_00019626-exon-sc0000332-1575043694:104454..104721Clytia hemisphaericaexon
TCONS_00019626-exon-sc0000332-1575043694:94939..95135TCONS_00019626-exon-sc0000332-1575043694:94939..95135Clytia hemisphaericaexon
TCONS_00019626-exon-sc0000332-1575043694:94646..94735TCONS_00019626-exon-sc0000332-1575043694:94646..94735Clytia hemisphaericaexon
TCONS_00019626-exon-sc0000332-1575043694:94303..94368TCONS_00019626-exon-sc0000332-1575043694:94303..94368Clytia hemisphaericaexon
TCONS_00019626-exon-sc0000332-1575043694:92321..93679TCONS_00019626-exon-sc0000332-1575043694:92321..93679Clytia hemisphaericaexon
TCONS_00019626-exon-sc0000332-1510915933:104454..104721TCONS_00019626-exon-sc0000332-1510915933:104454..104721Clytia hemisphaericaexon
TCONS_00019626-exon-sc0000332-1510915933:94939..95135TCONS_00019626-exon-sc0000332-1510915933:94939..95135Clytia hemisphaericaexon
TCONS_00019626-exon-sc0000332-1510915933:94646..94735TCONS_00019626-exon-sc0000332-1510915933:94646..94735Clytia hemisphaericaexon
TCONS_00019626-exon-sc0000332-1510915933:94303..94368TCONS_00019626-exon-sc0000332-1510915933:94303..94368Clytia hemisphaericaexon
TCONS_00019626-exon-sc0000332-1510915933:92321..93679TCONS_00019626-exon-sc0000332-1510915933:92321..93679Clytia hemisphaericaexon
TCONS_00019626-exon-sc0000332-1491911889:104454..104721TCONS_00019626-exon-sc0000332-1491911889:104454..104721Clytia hemisphaericaexon
TCONS_00019626-exon-sc0000332-1491911889:94939..95135TCONS_00019626-exon-sc0000332-1491911889:94939..95135Clytia hemisphaericaexon
TCONS_00019626-exon-sc0000332-1491911889:94646..94735TCONS_00019626-exon-sc0000332-1491911889:94646..94735Clytia hemisphaericaexon
TCONS_00019626-exon-sc0000332-1491911889:94303..94368TCONS_00019626-exon-sc0000332-1491911889:94303..94368Clytia hemisphaericaexon
TCONS_00019626-exon-sc0000332-1491911889:92321..93679TCONS_00019626-exon-sc0000332-1491911889:92321..93679Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019626-proteinTCONS_00019626-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000332supercontigsc0000332:92321..104721 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
239.106	245.1	193.795	181.223	102.633	78.6266	299.417	313.239	166.451	199.194	94.1167	95.7467	60.3794	54.9949	96.9458	119.109	161.704	134.563	25.5853	57.003	73.3676	70.7672	127.334	118.218	65.7771	67.4723	86.9066	56.2475	169.403	121.568
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008855TRAP-delta
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0005783endoplasmic reticulum
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0016021 integral component of membrane
Blast
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BLAST of TCONS_00019626 vs. Swiss-Prot (Human)
Match: SSRD (Translocon-associated protein subunit delta OS=Homo sapiens GN=SSR4 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.266e-25
Identity = 57/150 (38.00%), Postives = 87/150 (58.00%), Query Frame = 1 
Query:  271 DQCTSPTVHASTYTSKSVALSVETAYLSELTVQCSEGVSTLDLYAEIEGVIVPVASIPDKEGTYQISWAKDHKKATTGKINIKVFNNEGYNAYRKAQRNEEDVSSVKALFTVTVNHPGVSREGLFVQTEFXXXXXXXXXFWTANSMRNQI 720
            + C  P +  S YT+    +S ET ++ E+++ C   V  + LYA++ G   PV    D  G YQ+SW+ DHK A  G   ++ F+ E Y+  RKAQRN ED+S +  LFTV+V+H G +  G +V TE LA    L++++ A S ++ I
Sbjct:   24 EACLEPQITPSYYTTSDAVISTETVFIVEISLTCKNRVQNMALYADVGGKQFPVTRGQDV-GRYQVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDISIIPPLFTVSVDHRG-TWNGPWVSTEVLAAAIGLVIYYLAFSAKSHI 171
The following BLAST results are available for this feature:
BLAST of TCONS_00019626 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SSRD3.266e-2538.00Translocon-associated protein subunit delta OS=Hom... [more]
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