TCONS_00019626-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00019626-protein
Unique Name	TCONS_00019626-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	170

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00019626-protein ID=TCONS_00019626-protein|Name=TCONS_00019626-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
MAYIKLLLGLLFAAIVSADQCTSPTVHASTYTSKSVALSVETAYLSELTV
QCSEGVSTLDLYAEIEGVIVPVASIPDKEGTYQISWAKDHKKATTGKINI
KVFNNEGYNAYRKAQRNEEDVSSVKALFTVTVNHPGVSREGLFVQTEFLA
VVAALLLFWTANSMRNQIME

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_011041	XLOC_011041	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00019626	TCONS_00019626	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008855	TRAP-delta

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane
GO:0005783	endoplasmic reticulum

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008855	Translocon-associated	PFAM	PF05404	TRAP-delta	coord: 9..169 e-value: 4.5E-55 score: 185.5

Blast

[Close]

BLAST of TCONS_00019626-protein vs. Swiss-Prot (Human)
Match: SSRD (Translocon-associated protein subunit delta OS=Homo sapiens GN=SSR4 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.786e-32
Identity = 57/150 (38.00%), Postives = 87/150 (58.00%), Query Frame = 0

Query:   19 DQCTSPTVHASTYTSKSVALSVETAYLSELTVQCSEGVSTLDLYAEIEGVIVPVASIPDKEGTYQISWAKDHKKATTGKINIKVFNNEGYNAYRKAQRNEEDVSSVKALFTVTVNHPGVSREGLFVQTEFLAVVAALLLFWTANSMRNQI 168
            + C  P +  S YT+    +S ET ++ E+++ C   V  + LYA++ G   PV    D  G YQ+SW+ DHK A  G   ++ F+ E Y+  RKAQRN ED+S +  LFTV+V+H G +  G +V TE LA    L++++ A S ++ I
Sbjct:   24 EACLEPQITPSYYTTSDAVISTETVFIVEISLTCKNRVQNMALYADVGGKQFPVTRGQDV-GRYQVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDISIIPPLFTVSVDHRG-TWNGPWVSTEVLAAAIGLVIYYLAFSAKSHI 171

The following BLAST results are available for this feature:

BLAST of TCONS_00019626-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00019626-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SSRD	2.786e-32	38.00	Translocon-associated protein subunit delta OS=Hom...	[more]

You are here

TCONS_00019626-protein (polypeptide) - C. hemisphaerica