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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019451 ID=TCONS_00019451|Name=TCONS_00019451|organism=Clytia hemisphaerica|type=transcript|length=2022bpRun BLAST on NCBI protein sequence of TCONS_00019451-protein >TCONS_00019451-protein ID=TCONS_00019451-protein|Name=TCONS_00019451-protein|organism=Clytia hemisphaerica|type=polypeptide|length=640bp MSVIVRKDSKIMLYCKGADTIIYELLSNQSQPIMEPTQQHLDTFACEGLRRun BLAST on NCBI transcript from alignment at sc0000328:21972..36264+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019451 ID=TCONS_00019451|Name=TCONS_00019451|organism=Clytia hemisphaerica|type=transcript|length=14293bp|location=Sequence derived from alignment at sc0000328:21972..36264+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000328:21972..36264+ >TCONS_00019451 ID=TCONS_00019451|Name=TCONS_00019451|organism=Clytia hemisphaerica|type=CDS|length=32640bp|location=Sequence derived from alignment at sc0000328:21972..36264+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019451 vs. Swiss-Prot (Human)
Match: AT8B2 (Phospholipid-transporting ATPase ID OS=Homo sapiens GN=ATP8B2 PE=1 SV=2) HSP 1 Score: 617.846 bits (1592), Expect = 0.000e+0 Identity = 322/621 (51.85%), Postives = 419/621 (67.47%), Query Frame = 1
Query: 58 YELLSVLDFDNVRKRMSVIVRK-DSKIMLYCKGADTIIYELLSNQSQPIMEPTQQHLDTFACEGLRTLCLASKELSQGEFEDWAEEFNEARTSTEDRDEKVFEVYCSIEKDLNLLGATAIEDKLQDGVPDAIANLAEANIKIFVLTGDKQETAINIGYSSMLLTENMHDVFVVEGDNLQTVHANINKYTDRMNEIQTLEGNAPKIYFSGVNDHESVPMEDVDENMKDGFALVISGKSLAFALLPEAEQDFLRLALACKAVICCRVTPLQKALVVELVKKNVKATTLAIGDGANDVSMIKAAHIGVGISGKEGRQAVLAADYSFAQFRFLERLLLVHGRWSYWRMSKFLNYFFYKNFAFTLVQFWYNLFTGFSAMTLYDDYFLSVYNVCFTSLPVLAMGIFDQDVNDQKSLSSPKLYIPGQSNLLFNKKTFALKLFHGVVTSLLLFFIPYGIFKETITSEGLAADLKTDFXXXXXXXXXXXXNLQMALDTSHWLWINHFFIWGSIVFYFIFTFTLYSEGLFNFAVTWFPNVSAATNTFGSGAFWAAFFITCVVCLFPVVGYRWAMQKMYPTLGDKIRKGIWKERRSKNLSLLFQRKSRVSLRARPG---SHRSAFXHFFIWG 1908
Y+LL++LDF+N+RKRMSVIVR + KI LYCKGADTI+ + L + +Q ++ T HL+ +A EGLRTL LA K+L + +E+WAE +A + + R++++ +Y +E ++ LLGATAIEDKLQ GVP+ IA L ANIKI+VLTGDKQETA+NIGYS +LT++M +VF+V G + V + K ++M + GN F+ + S + V E + +ALVI+G SLA AL + E +FL A ACKAVICCRVTPLQKA VVELVKK KA TLAIGDGANDVSMIK AHIGVGISG+EG QAVLA+DYSF+QF+FL+RLLLVHGRWSY RM KFL YFFYKNFAFT+V FW+ F GFSA T+YD YF+++YN+ +TSLPVLAMG+FDQDV +Q+S+ PKLY PGQ NLLFNK+ F + + G+ TS+L+FFIPYG+F + +G FAV + LVI+V++Q+ LDT +W INHFFIWGS+ YF F ++S GLF+ F V A NT W +T VVC+ PVV +R+ + P L D +R ++ K +R R R R G SH+ F + G
Sbjct: 548 YQLLAILDFNNIRKRMSVIVRNPEGKIRLYCKGADTILLDRLHHSTQELLNTTMDHLNEYAGEGLRTLVLAYKDLDEEYYEEWAERRLQASLAQDSREDRLASIYEEVENNMMLLGATAIEDKLQQGVPETIALLTLANIKIWVLTGDKQETAVNIGYSCKMLTDDMTEVFIVTGHTVLEVREELRKAREKMMDSSRSVGNG----FTYQDKLSSSKLTSVLEAVAGEYALVINGHSLAHALEADMELEFLETACACKAVICCRVTPLQKAQVVELVKKYKKAVTLAIGDGANDVSMIKTAHIGVGISGQEGIQAVLASDYSFSQFKFLQRLLLVHGRWSYLRMCKFLCYFFYKNFAFTMVHFWFGFFCGFSAQTVYDQYFITLYNIVYTSLPVLAMGVFDQDVPEQRSMEYPKLYEPGQLNLLFNKREFFICIAQGIYTSVLMFFIPYGVFADATRDDGTQLADYQSFAVTVATSLVIVVSVQIGLDTGYWTAINHFFIWGSLAVYFAILFAMHSNGLFDMFPNQFRFVGNAQNTLAQPTVWLTIVLTTVVCIMPVVAFRFLRLNLKPDLSDTVRYTQLVRKKQKAQHRCMRRVGRTGSR-RSGYAFSHQEGFGELIMSG 1163 The following BLAST results are available for this feature:
BLAST of TCONS_00019451 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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