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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019231 ID=TCONS_00019231|Name=TCONS_00019231|organism=Clytia hemisphaerica|type=transcript|length=2638bpRun BLAST on NCBI protein sequence of TCONS_00019231-protein >TCONS_00019231-protein ID=TCONS_00019231-protein|Name=TCONS_00019231-protein|organism=Clytia hemisphaerica|type=polypeptide|length=475bp FCCRIIVTESIFLSRQISQARVKRTPRQKIHYSTKIISEIHIDSNKMSGTRun BLAST on NCBI transcript from alignment at sc0000321:2976..21612- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019231 ID=TCONS_00019231|Name=TCONS_00019231|organism=Clytia hemisphaerica|type=transcript|length=18637bp|location=Sequence derived from alignment at sc0000321:2976..21612- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000321:2976..21612- >TCONS_00019231 ID=TCONS_00019231|Name=TCONS_00019231|organism=Clytia hemisphaerica|type=CDS|length=19992bp|location=Sequence derived from alignment at sc0000321:2976..21612- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019231 vs. Swiss-Prot (Human)
Match: RBBP4 (Histone-binding protein RBBP4 OS=Homo sapiens GN=RBBP4 PE=1 SV=3) HSP 1 Score: 748.429 bits (1931), Expect = 0.000e+0 Identity = 353/414 (85.27%), Postives = 382/414 (92.27%), Query Frame = 3
Query: 186 RIINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPDVTKQEGKDYSTHRLILGTHTSDEQNHLVIASVQLPKDETQFDASHYDHDKAEFGGFGTVSGKIEIDIKINHEGEVNRARYMPQNPYVIATKTPTSDVLIFDYTKHPSKPDPNSGCTPELRLKGHSKEGYGLSWNPNLSGHLLSASDDHTICLWDLNSAPKEAKTLDAARIFNGHSDVVEDVSWHLLHESLFGSVADDHKLMIWDTRRGSNNKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLRLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFAWNPNDPWAICSVSEDNIMQVWQMAENIYNDEEIDTPAGDLEPR-QGS 1424
R+INEEYKIWKKNTPFLYDLVMTHALEWPSLT QWLPDVT+ EGKD+S HRL+LGTHTSDEQNHLVIASVQLP D+ QFDASHYD +K EFGGFG+VSGKIEI+IKINHEGEVNRARYMPQNP +IATKTP+SDVL+FDYTKHPSKPDP+ C P+LRL+GH KEGYGLSWNPNLSGHLLSASDDHTICLWD+++ PKE K +DA IF GH+ VVEDVSWHLLHESLFGSVADD KLMIWDTR + +KPSH+VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL+LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL+VWDLSKIGEEQS EDAEDGPPELLFIHGGHTAKISDF+WNPN+PW ICSVSEDNIMQVWQMAENIYNDE+ P G ++P QGS
Sbjct: 15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDED---PEGSVDPEGQGS 425 The following BLAST results are available for this feature:
BLAST of TCONS_00019231 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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