TCONS_00019231-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00019231-protein
Unique NameTCONS_00019231-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length475

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00019231-protein ID=TCONS_00019231-protein|Name=TCONS_00019231-protein|organism=Clytia hemisphaerica|type=polypeptide|length=475bp
FCCRIIVTESIFLSRQISQARVKRTPRQKIHYSTKIISEIHIDSNKMSGT
AAEAYDDAAEERIINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPDV
TKQEGKDYSTHRLILGTHTSDEQNHLVIASVQLPKDETQFDASHYDHDKA
EFGGFGTVSGKIEIDIKINHEGEVNRARYMPQNPYVIATKTPTSDVLIFD
YTKHPSKPDPNSGCTPELRLKGHSKEGYGLSWNPNLSGHLLSASDDHTIC
LWDLNSAPKEAKTLDAARIFNGHSDVVEDVSWHLLHESLFGSVADDHKLM
IWDTRRGSNNKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL
RNLRLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE
QSTEDAEDGPPELLFIHGGHTAKISDFAWNPNDPWAICSVSEDNIMQVWQ
MAENIYNDEEIDTPAGDLEPRQGSS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_010795XLOC_010795Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00019231TCONS_00019231Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR022052Histone-bd_RBBP4_N
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 336..350
score: 47.36
coord: 380..394
score: 36.17
coord: 240..254
score: 43.34
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 353..393
e-value: 2.9E-7
score: 40.1
coord: 263..303
e-value: 0.0061
score: 25.8
coord: 410..450
e-value: 2.9E-4
score: 30.1
coord: 309..349
e-value: 9.1E-10
score: 48.4
coord: 213..253
e-value: 2.3E-6
score: 37.2
coord: 159..200
e-value: 41.0
score: 6.8
IPR001680WD40 repeatPFAMPF00400WD40coord: 414..449
e-value: 0.0036
score: 18.0
coord: 220..253
e-value: 0.04
score: 14.7
coord: 356..393
e-value: 1.4E-4
score: 22.5
coord: 268..303
e-value: 0.041
score: 14.7
coord: 311..349
e-value: 2.1E-7
score: 31.4
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 417..451
score: 9.038
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 316..352
score: 13.85
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 220..262
score: 12.747
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 270..312
score: 9.573
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 360..402
score: 12.881
IPR022052Histone-binding protein RBBP4, N-terminalPFAMPF12265CAF1C_H4-bdcoord: 66..135
e-value: 3.0E-29
score: 101.0
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 56..468
e-value: 6.8E-86
score: 287.9
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 240..254
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 380..394
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 336..350
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 220..459
score: 36.569
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 168..456

Blast
[Close]
BLAST of TCONS_00019231-protein vs. Swiss-Prot (Human)
Match: RBBP4 (Histone-binding protein RBBP4 OS=Homo sapiens GN=RBBP4 PE=1 SV=3)

HSP 1 Score: 761.14 bits (1964), Expect = 0.000e+0
Identity = 359/422 (85.07%), Postives = 389/422 (92.18%), Query Frame = 0 
Query:   54 AYDDAAEERIINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPDVTKQEGKDYSTHRLILGTHTSDEQNHLVIASVQLPKDETQFDASHYDHDKAEFGGFGTVSGKIEIDIKINHEGEVNRARYMPQNPYVIATKTPTSDVLIFDYTKHPSKPDPNSGCTPELRLKGHSKEGYGLSWNPNLSGHLLSASDDHTICLWDLNSAPKEAKTLDAARIFNGHSDVVEDVSWHLLHESLFGSVADDHKLMIWDTRRGSNNKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLRLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFAWNPNDPWAICSVSEDNIMQVWQMAENIYNDEEIDTPAGDLEPR-QGS 474
            A+DDA EER+INEEYKIWKKNTPFLYDLVMTHALEWPSLT QWLPDVT+ EGKD+S HRL+LGTHTSDEQNHLVIASVQLP D+ QFDASHYD +K EFGGFG+VSGKIEI+IKINHEGEVNRARYMPQNP +IATKTP+SDVL+FDYTKHPSKPDP+  C P+LRL+GH KEGYGLSWNPNLSGHLLSASDDHTICLWD+++ PKE K +DA  IF GH+ VVEDVSWHLLHESLFGSVADD KLMIWDTR  + +KPSH+VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL+LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL+VWDLSKIGEEQS EDAEDGPPELLFIHGGHTAKISDF+WNPN+PW ICSVSEDNIMQVWQMAENIYNDE+   P G ++P  QGS
Sbjct:    7 AFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDED---PEGSVDPEGQGS 425
The following BLAST results are available for this feature:
BLAST of TCONS_00019231-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBBP40.000e+085.07Histone-binding protein RBBP4 OS=Homo sapiens GN=R... [more]
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