TCONS_00019105 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019105
Unique NameTCONS_00019105
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4302

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019105 ID=TCONS_00019105|Name=TCONS_00019105|organism=Clytia hemisphaerica|type=transcript|length=4302bp
gtatttgTATCAAAATGCATGCAATGATTGTTGATTTATAAAGTTCCGTA
ATTGTCTTCAAACGAGAGGGTTAAAGTATATAtatgaaaagataatttca
cttttattttccCGATTATTTTTACCTTGAATGGGAAGATTTAGTAGGtg
attttcttacttttacacTGGTCCAGCACTATTTCTCTACAATTATTAAG
TGTTCGAAAGACTCAAGACACCTTTTTAATTATATGTAGAACAGGTTAAA
TATCACTTCGATAAAACTCATTCCGTTCGGCGGTCAAAATGACTACCCCG
TGTAGGTTATAATGACACTGGTACCTCCATATATCAGCTCCTTATGAAGC
TGCAAGTTCTCCGTCGTATAATCCAAATAATTACGATTTGCCATTTTTTA
ACATTATACAATTGTCTAAACATACCCACAAGTAAGAGTTCCAGATTTTG
ATTTGCCATTTTGAGTAACTGACTAAATCCCAGTCTTTTTGAATAAGAGG
AAATTGTGTCCAGACTACTGTTACAGAACTGTTTCAGTAAATGACTCTGC
CCGAAAATTAAAGTCATTTTTTACAGTATACaatttgaaaatggaaaaaa
agagcTGTATCTTTGGATGGaataaattagttttttttcacagtgataac
cCTGTGTAGGTTATAATGACACTGGTCTTGCCAATTTGCCAGCTCTTCTT
GAAGCTGCAAGTTTTCCTGATAAATAGACATAAATGATAAGAAGTGGTTA
GTGGTGGAGCATTTCTCAATCATAATATATAGCGGGTCAGGAAGCTGATt
tgccattttcttttttttacgaattttcaatttattgtaCAAAAAGAGCC
ATCTTTGGATgaaatagattttttatttttttttcacagtgataaccctc
taagattgaaaatttcttaGACTAGTAGCAAGTGTCTGCTTTTCCTTAGA
CACGGATAACGATGTGATTAAAAGCCTAAAGATTTCATGAGAATTTCGCG
ATCATAGAAaaattcatcttcattttctaaatgttttttattatcaaaag
tgacaaatttttgtcttcgcggtagtctgaatcgcaggtCTCTTCACAAC
CTCAGGTAGTCTTGATGCTAATGAGctgttataaaaaatattgtttgata
atttccataaaaaatattgtttgaTAATTTCCATGCCCTGTTAACAGATC
GATTCAACAGTTGAATCGAAATTTTGCATAAAGATAGAGAAAATGCTTAT
TTTTCACTTCCAacaatattttattatttaattttaagaaatattgaTAA
CGTCAACAAAGAAGGTCAACGATGAAACATAATTCTAGCTCAGCACTTTA
AAGAGTTTATAAACAAGTGAaattttacttaatttctaCAAAATGGGGTG
GAATAATTGGACAACgaaattttccatattttattgCCACTACATTGAGT
CTTAACATCCCAtaaggatggcattcatagttTCATACATGAGGAAGACG
GGAAAGCACCTTATTAAGTGTCGCGGgcttttcagtattttagttccgcg
aGGCTCTGTGGGAGAAAAGGTAAATTCCCTTACCCTGATACAGGTACCAA
TGTGGTGCTCCCCCATTCCGGCAGGGTACTAGGAGGTGTGTGTAGAGATC
CTAAAAAAACAATGAGAAATTTTTTGTTAGAATCAAAATCGTCAACCTTT
CGATTCAATGTTATGTTATGTTCCAAAAATTCCTTCATCTTTTAAAATAT
TCCCATGATAGAGGACAATTACCTCTTTCCAAACGATATTTCAGCGAGTA
TCACAGTTTGGgcttaaaaacaaattttataaaaattataagaaaacact
TTGAAAGGATCTGAGATAGAGAGCTTGGATTTCTAGTTCAAATAGAGGGA
ACCTCAAAGTTAGGTGCTGGGTATGCGCGATGACCTGGAAGGtcgacttt
tttgactttttaaatcttGTTTTTCCGAGGGTTATATTATGACAATCAAG
CGTCAAAAGATTTGTCAAAAGTCTTGGAATTTTCACTTCTTGTGTAAAAA
GCCATGACaagtcaaaacatatttttgaaaatacttcTAGCCCTAATTTT
CAAGTCTAGAGAAGAAATTCCTTGATTGTGTCTcacattttaatattttg
atggATATGAACAATATTACACACTTTGTCTACTTCCTGAGCCGGTGGTT
GGGGCTGTTGGGCCTGCTGAGCCGGAGGTTGGGGCTGTTGGGCCTGCTGA
GCCGGAGGTTGGGGCTGTTGGGCCTGCTGGTTTTGCAGTCGTAGCTGTAT
AGATAAGATGCTTTGATTGCTGGTCTTAACATCCCATAAAGATGACATTC
ATAGTTTCATACATGAGGAAGACGGGAAAGCACCTCATTAAGTGTCGCGG
gcttttcagtattttagttccgcgaGGCTCTGTGGGAGAAAAGGTAAATT
CCCTTACCCTGATACAGGTACCAATGTGGTGCTCCCCCATTCCGGCAGGG
TACTAGGAGGTGTGTGTAGAGATCCTAAAAAAACAATGAGAAATTTTTTG
TTAGAATCAAAATCGTCAACCTTTCGATTCAATGTTATGTTATGTTCCAA
AAATTCCTTCATCTTTTAAAATATTCCCATGATAGAGGACAATTACCTCT
TTCCAAACGATATTTCAGCGAGTATCACAATTTGGGcttgaaaacaaatt
ttataaaaattataagaaaacactTTGAAAGGATCTGAGATAGAGAGCTT
GGATTTCTAGTTCAAATAGAGGGAACTTCAAAGTTAGGTGCTGGGTATGC
GCGATGACCTGGAAGGtcgacttttttgactttttaaatcttGTTTTTCC
GAGGGCTATATTATGACAATCAAGCGTCAAAAGATTTGTCAAAAGTCTTG
GAATTTTCACTTCTTGTGTAAAAAGCCATGACAAGTCAAAACATATTTTT
GAAAATACTTCTAGCCCTAATTTTCAAGTCTAGAGAAGAAATTCCTTGAT
TGTGTCTCACATTTTAATATTTTGATGGATATGAACAATATTACACACTT
TGTCTACTTCCTGAGCCGGTGGTTGGGGCTGTTGGGCCTGCTGGTTTTGC
AGTCGTAGCTGTATAGATAAGATGCTTTGATTGCTGGTCTTAACATCCCA
TAAAGATGACATTCATAGTTTCATACATGAGGAAGACGGGAAAGCACCTC
ATTAAGTGTCGCGGGCTTTTCAGTATTTTAGTTCCGCGAGGCTCTGTGGG
AGAAAAGGTAAATTCCCTTACCCTGATACAGGTACCAATGTGGTGCTCCC
CCATTCCGGCAGGGTACTAGGAGGTGTGTGTAGAGATCCTAAAAAAACAA
TGAGAAATTTTTTGTTAGAATCAAAATCGTCAACCTTTCGATTCAATGTT
ATGTTATGTTCCAAAAATTCCTTCATCTTTTAAAATATTCCCATGATAGA
GGACAATTACCTCTTTCCAAACGATATTTCAGCGAGTATCACAGTTTGGG
CTTAAAAACAAATTTTATAAAAATTATAAGAAAACACTTTGAAAGGATCT
GAGATAGAGAGCTTGGATTTCTAGTTCAAATAGAGGGAACCTCAAAGTTA
GGTGCTGGGTATGCGCGATGACCTGGAAGGtcgacttttttgacttttta
aatcttGTTTTTCCGAGGGTTATATTATGACAATCAAGCGTCAAAAGATT
TGTCAAAAGTCTTGGAGTTTTCACTTCTTGTGTAAAAAGCCATGACaagt
caaaacatatttttgaaaatactgcTAGCCCTAATTTTCAAGTCTAGAGA
AGAAATTTCTTGATTGTGTCTCACATGTTAATATTTTGATGGATATGAAC
AATATTACTCACTTTGTCTACTTGCTGAGCCGGTGGTTGGGGCTGTTGGG
CCTGCTGAGCCGGAGGTTGGGGCTTTTGGGGTTGCTGGTTTTGCAGTCGT
TGCTGTATAGATAAGATGCTTTGGTTGCTGGTCTTAACATCCCAtaagga
tggcattcatagttTCATACATGATGAAGACGGGAAAGCACCTCATTAAG
TGTCGCGGGCTTTTCAGTATTATAGTTCCGCGAGGCTCTGTGGGAGAAAA
GGTAAATTCCCTTACCCTGATACAGGTACCAATGTGGTGCTCCCCCATTC
CGGCAGGGTACTAGGAGGTCTGTGTAGAGATCCTAAAAAAACAATGAGAA
ATTTTTTGTTAGAATCACAATCGTCAACCTTTCGATTCAATGTTATGTTA
TGTTCCAAAAATTCCTTTATCTTTTAAAATATTCCCATGATAGAGGACAA
TT
Run BLAST on NCBI

transcript from alignment at sc0000319:334007..338368+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019105 ID=TCONS_00019105|Name=TCONS_00019105|organism=Clytia hemisphaerica|type=transcript|length=4362bp|location=Sequence derived from alignment at sc0000319:334007..338368+ (Clytia hemisphaerica)
gtatttgTATCAAAATGCATGCAATGATTGTTGATTTATAAAGTTCCGTA
ATTGTCTTCAAACGAGAGGGTTAAAGTATATAtatgaaaagataatttca
cttttattttccCGATTATTTTTACCTTGAATGGGAAGATTTAGTAGGtg
attttcttacttttacacTGGTCCAGCACTATTTCTCTACAATTATTAAG
TGTTCGAAAGACTCAAGACACCTTTTTAATTATATGTAGAACAGGTTAAA
TATCACTTCGATAAAACTCATTCCGTTCGGCGGTCAAAATGACTACCCCG
TGTAGGTTATAATGACACTGGTACCTCCATATATCAGCTCCTTATGAAGC
TGCAAGTTCTCCGTCGTATAATCCAAATAATTACGATTTGCCATTTTTTA
ACATTATACAATTGTCTAAACATACCCACAAGTAAGAGTTCCAGATTTTG
ATTTGCCATTTTGAGTAACTGACTAAATCCCAGTCTTTTTGAATAAGAGG
AAATTGTGTCCAGACTACTGTTACAGAACTGTTTCAGTAAATGACTCTGC
CCGAAAATTAAAGTCATTTTTTACAGTATACaatttgaaaatggaaaaaa
agagcTGTATCTTTGGATGGaataaattagttttttttcacagtgataac
cCTGTGTAGGTTATAATGACACTGGTCTTGCCAATTTGCCAGCTCTTCTT
GAAGCTGCAAGTTTTCCTGATAAATAGACATAAATGATAAGAAGTGGTTA
GTGGTGGAGCATTTCTCAATCATAATATATAGCGGGTCAGGAAGCTGATt
tgccattttcttttttttacgaattttcaatttattgtaCAAAAAGAGCC
ATCTTTGGATgaaatagattttttatttttttttcacagtgataaccctc
taagattgaaaatttcttaGACTAGTAGCAAGTGTCTGCTTTTCCTTAGA
CACGGATAACGATGTGATTAAAAGCCTAAAGATTTCATGAGAATTTCGCG
ATCATAGAAaaattcatcttcattttctaaatgttttttattatcaaaag
tgacaaatttttgtcttcgcggtagtctgaatcgcaggtCTCTTCACAAC
CTCAGGTAGTCTTGATGCTAATGAGctgttataaaaaatattgtttgata
atttccataaaaaatattgtttgaTAATTTCCATGCCCTGTTAACAGATC
GATTCAACAGTTGAATCGAAATTTTGCATAAAGATAGAGAAAATGCTTAT
TTTTCACTTCCAacaatattttattatttaattttaagaaatattgaTAA
CGTCAACAAAGAAGGTCAACGATGAAACATAATTCTAGCTCAGCACTTTA
AAGAGTTTATAAACAAGTGAaattttacttaatttctaCAAAATGGGGTG
GAATAATTGGACAACgaaattttccatattttattgCCACTACATTGAGT
CTTAACATCCCAtaaggatggcattcatagttTCATACATGAGGAAGACG
GGAAAGCACCTTATTAAGTGTCGCGGgcttttcagtattttagttccgcg
aGGCTCTGTGGGAGAAAAGGTAAATTCCCTTACCCTGATACAGGTACCAA
TGTGGTGCTCCCCCATTCCGGCAGGGTACTAGGAGGTGTGTGTAGAGATC
CTAAAAAAACAATGAGAAATTTTTTGTTAGAATCAAAATCGTCAACCTTT
CGATTCAATGTTATGTTATGTTCCAAAAATTCCTTCATCTTTTAAAATAT
TCCCATGATAGAGGACAATTACCTCTTTCCAAACGATATTTCAGCGAGTA
TCACAGTTTGGgcttaaaaacaaattttataaaaattataagaaaacact
TTGAAAGGATCTGAGATAGAGAGCTTGGATTTCTAGTTCAAATAGAGGGA
ACCTCAAAGTTAGGTGCTGGGTATGCGCGATGACCTGGAAGGtcgacttt
tttgactttttaaatcttGTTTTTCCGAGGGTTATATTATGACAATCAAG
CGTCAAAAGATTTGTCAAAAGTCTTGGAATTTTCACTTCTTGTGTAAAAA
GCCATGACaagtcaaaacatatttttgaaaatacttcTAGCCCTAATTTT
CAAGTCTAGAGAAGAAATTCCTTGATTGTGTCTcacattttaatattttg
atggATATGAACAATATTACACACTTTGTCTACTTCCTGAGCCGGTGGTT
GGGGCTGTTGGGCCTGCTGAGCCGGAGGTTGGGGCTGTTGGGCCTGCTGA
GCCGGAGGTTGGGGCTGTTGGGCCTGCTGGTTTTGCAGTCGTAGCTGTAT
AGATAAGATGCTTTGATTGCTGGTCTTAACATCCCATAAAGATGACATTC
ATAGTTTCATACATGAGGAAGACGGGAAAGCACCTCATTAAGTGTCGCGG
gcttttcagtattttagttccgcgaGGCTCTGTGGGAGAAAAGGTAAATT
CCCTTACCCTGATACAGGTACCAATGTGGTGCTCCCCCATTCCGGCAGGG
TACTAGGAGGTGTGTGTAGAGATCCTAAAAAAACAATGAGAAATTTTTTG
TTAGAATCAAAATCGTCAACCTTTCGATTCAATGTTATGTTATGTTCCAA
AAATTCCTTCATCTTTTAAAATATTCCCATGATAGAGGACAATTACCTCT
TTCCAAACGATATTTCAGCGAGTATCACAATTTGGGcttgaaaacaaatt
ttataaaaattataagaaaacactTTGAAAGGATCTGAGATAGAGAGCTT
GGATTTCTAGTTCAAATAGAGGGAACTTCAAAGTTAGGTGCTGGGTATGC
GCGATGACCTGGAAGGtcgacttttttgactttttaaatcttGTTTTTCC
GAGGGCTATATTATGACAATCAAGCGTCAAAAGATTTGTCAAAAGTCTTG
GAATTTTCACTTCTTGTGTAAAAAGCCATGACAAGTCAAAACATATTTTT
GAAAATACTTCTAGCCCTAATTTTCAAGTCTAGAGAAGAAATTCCTTGAT
TGTGTCTCACATTTTAATATTTTGATGGATATGAACAATATTACACACTT
TGTCTACTTCCTGAGCCGGTGGTTGGGGCTGTTGGGCCTGCTGAGCCGGA
GGTTGGGGCTGTTGGGCCTGCTGAGCCGGAGGTTGGGGCTGTTGGGCCTG
CTGGTTTTGCAGTCGTAGCTGTATAGATAAGATGCTTTGATTGCTGGTCT
TAACATCCCATAAAGATGACATTCATAGTTTCATACATGAGGAAGACGGG
AAAGCACCTCATTAAGTGTCGCGGGCTTTTCAGTATTTTAGTTCCGCGAG
GCTCTGTGGGAGAAAAGGTAAATTCCCTTACCCTGATACAGGTACCAATG
TGGTGCTCCCCCATTCCGGCAGGGTACTAGGAGGTGTGTGTAGAGATCCT
AAAAAAACAATGAGAAATTTTTTGTTAGAATCAAAATCGTCAACCTTTCG
ATTCAATGTTATGTTATGTTCCAAAAATTCCTTCATCTTTTAAAATATTC
CCATGATAGAGGACAATTACCTCTTTCCAAACGATATTTCAGCGAGTATC
ACAGTTTGGGCTTAAAAACAAATTTTATAAAAATTATAAGAAAACACTTT
GAAAGGATCTGAGATAGAGAGCTTGGATTTCTAGTTCAAATAGAGGGAAC
CTCAAAGTTAGGTGCTGGGTATGCGCGATGACCTGGAAGGtcgacttttt
tgactttttaaatcttGTTTTTCCGAGGGTTATATTATGACAATCAAGCG
TCAAAAGATTTGTCAAAAGTCTTGGAGTTTTCACTTCTTGTGTAAAAAGC
CATGACaagtcaaaacatatttttgaaaatactgcTAGCCCTAATTTTCA
AGTCTAGAGAAGAAATTTCTTGATTGTGTCTCACATGTTAATATTTTGAT
GGATATGAACAATATTACTCACTTTGTCTACTTGCTGAGCCGGTGGTTGG
GGCTGTTGGGCCTGCTGAGCCGGAGGTTGGGGCTTTTGGGGTTGCTGGTT
TTGCAGTCGTTGCTGTATAGATAAGATGCTTTGGTTGCTGGTCTTAACAT
CCCAtaaggatggcattcatagttTCATACATGATGAAGACGGGAAAGCA
CCTCATTAAGTGTCGCGGGCTTTTCAGTATTATAGTTCCGCGAGGCTCTG
TGGGAGAAAAGGTAAATTCCCTTACCCTGATACAGGTACCAATGTGGTGC
TCCCCCATTCCGGCAGGGTACTAGGAGGTCTGTGTAGAGATCCTAAAAAA
ACAATGAGAAATTTTTTGTTAGAATCACAATCGTCAACCTTTCGATTCAA
TGTTATGTTATGTTCCAAAAATTCCTTTATCTTTTAAAATATTCCCATGA
TAGAGGACAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010714XLOC_010714Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019105-exon-sc0000319-1491911889:334007..337077TCONS_00019105-exon-sc0000319-1491911889:334007..337077Clytia hemisphaericaexon
TCONS_00019105-exon-sc0000319-1510915933:334007..337077TCONS_00019105-exon-sc0000319-1510915933:334007..337077Clytia hemisphaericaexon
TCONS_00019105-exon-sc0000319-1575043694:334007..337077TCONS_00019105-exon-sc0000319-1575043694:334007..337077Clytia hemisphaericaexon
TCONS_00019105-exon-sc0000319-1491911889:337138..338368TCONS_00019105-exon-sc0000319-1491911889:337138..338368Clytia hemisphaericaexon
TCONS_00019105-exon-sc0000319-1510915933:337138..338368TCONS_00019105-exon-sc0000319-1510915933:337138..338368Clytia hemisphaericaexon
TCONS_00019105-exon-sc0000319-1575043694:337138..338368TCONS_00019105-exon-sc0000319-1575043694:337138..338368Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000319supercontigsc0000319:334007..338368 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.00904753	0	0	0	0.0119735	0	0	0	0	0.0184284	0	0	0	0.0367849	0	0	0.0818659	0	0	0.0464922	0.107684
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00019105 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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