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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00019092 ID=TCONS_00019092|Name=TCONS_00019092|organism=Clytia hemisphaerica|type=transcript|length=2898bpRun BLAST on NCBI protein sequence of TCONS_00019092-protein >TCONS_00019092-protein ID=TCONS_00019092-protein|Name=TCONS_00019092-protein|organism=Clytia hemisphaerica|type=polypeptide|length=770bp MVRLVDRSILLILTYLLVKVDSITIHVNTTLRLSGGNSSFEGNVEILYKGRun BLAST on NCBI transcript from alignment at sc0000319:195082..206181+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00019092 ID=TCONS_00019092|Name=TCONS_00019092|organism=Clytia hemisphaerica|type=transcript|length=11100bp|location=Sequence derived from alignment at sc0000319:195082..206181+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000319:195082..206181+ >TCONS_00019092 ID=TCONS_00019092|Name=TCONS_00019092|organism=Clytia hemisphaerica|type=CDS|length=25443bp|location=Sequence derived from alignment at sc0000319:195082..206181+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00019092 vs. Swiss-Prot (Human)
Match: LOXL2 (Lysyl oxidase homolog 2 OS=Homo sapiens GN=LOXL2 PE=1 SV=1) HSP 1 Score: 431.409 bits (1108), Expect = 2.415e-136 Identity = 261/693 (37.66%), Postives = 372/693 (53.68%), Query Frame = 1
Query: 508 LRLSGGNSSF-EGNVEILYKGQWKYVCDDYWDIRDAKVVCRQLGYAKAIIATRGSYYPISHNSSYWLDNVQCWGSEPDIDACKHRSYGSHNCKHGTELA---GXXXXXXXXXXXXXXXXSKASGKEVEDTKLRLVGPS--KHGFISEGFLEIKVDGVWGGVCADKWTGIESFVACGNLGYPD--TMDSKIAVPDEVQREIYEEKLTHYWMSRVYCDGKESTLYECQHAG------WKKHTCKSK-PVYLTCKRSPFING---SRFDKV-EMNNHNIRFRSGSRHSEGRVEIRHEGRWGTICDDGWDITDANVACRQMGFGSAFEAIHYAGFGHGVGKVWLDQVICNGTEKNIHNCSHLGWGVGDCGHPEDAGVKCYFPYTSDQEEGKLRVTGGPHSHLGRLEVFSDG----VWQGICGMGFGPREAEVACRQAGLGYAVRGFSTSK--HG-LNRRKGLYN-IKCSGDELRLQYCHHETDKT----GRCRYYEMASVECSRYAPDIVMDYREMKRSMRIESRPFNELTCAFEEKCLSSSANNHYWYQAYGHDMQRTLIRFTSRFWNRGTADYRPDVHKDRWEWHDCHAHYHSMERFADYDLVDRNGRKRSEGQKASFCLEDSKCDHSVAKRYNCTGKADQGISVGCADNYKFNIDCQWIDVTGLQYGEYTLRVIVNPIRKALESDYLNNVVVCK 2493
LRL+G EG VE+ Y GQW VCDD + I A VVCR+LGY +A T S Y WLDN+ C G+E + AC +G +CKH ++ D + +VED ++R + + K + EG++E+K W +C WT S V CG G+P T ++K V + + YW + C G E+ + C+ K TC++ P ++C + SRF K + +R R G+ EGRVE+ G WGT+CDD WD+ A+V CR++GFGSA EA+ + G G+G + L+++ C G EK+I +C G C H EDAGV+C P Q+ KLR+ GG + + GR+EV + VW +CG +G EA V CRQ GLG+A F + HG +N K + + +KCSG EL L +C H+ + G +Y A V CS APD+V++ ++++ +E RP L CA EE CLS+SA Y R L+RF+S+ N G +D+RP + W WHDCH HYHSME F YDL++ NG K +EG KASFCLED++C+ + K Y C DQGI++GC D Y+ +IDCQW+D+T + G+Y +V++NP + ESDY NN++ C+
Sbjct: 58 LRLAGQKRKHSEGRVEVYYDGQWGTVCDDDFSIHAAHVVCRELGYVEAKSWTASSSYG-KGEGPIWLDNLHCTGNEATLAACTSNGWGVTDCKHTEDVGVVCSDKRIPGFKFDNSLINQIENLNIQVEDIRIRAILSTYRKRTPVMEGYVEVKEGKTWKQICDKHWTAKNSRVVCGMFGFPGERTYNTK------VYKMFASRRKQRYWPFSMDCTGTEAHISSCKLGPQVSLDPMKNVTCENGLPAVVSCVPGQVFSPDGPSRFRKAYKPEQPLVRLRGGAYIGEGRVEVLKNGEWGTVCDDKWDLVSASVVCRELGFGSAKEAVTGSRLGQGIGPIHLNEIQCTGNEKSIIDCKFNAESQG-CNHEEDAGVRCNTPAMGLQK--KLRLNGGRNPYEGRVEVLVERNGSLVWGMVCGQNWGIVEAMVVCRQLGLGFASNAFQETWYWHGDVNSNKVVMSGVKCSGTELSLAHCRHDGEDVACPQGGVQY--GAGVACSETAPDLVLNAEMVQQTTYLEDRPMFMLQCAMEENCLSASAAQTDPTTGY-----RRLLRFSSQIHNNGQSDFRPKNGRHAWIWHDCHRHYHSMEVFTHYDLLNLNGTKVAEGHKASFCLEDTECEGDIQKNYECANFGDQGITMGCWDMYRHDIDCQWVDITDVPPGDYLFQVVINPNFEVAESDYSNNIMKCR 733 The following BLAST results are available for this feature:
BLAST of TCONS_00019092 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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