TCONS_00018930 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00018930
Unique Name	TCONS_00018930
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	887

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000313:344267..353032+
coding sequence from alignment at sc0000313:344267..353032+

transcript sequence

>TCONS_00018930 ID=TCONS_00018930|Name=TCONS_00018930|organism=Clytia hemisphaerica|type=transcript|length=887bp
AAGAAGTTCATAATGTAATATTTTACACAGGGAAGGAGAGGCATCTTATA
AAAATGAACGTTTGAGCAGATGTCACTTCAGAAATTGGACATCAATCCAA
AGTACATTTCAATTCTTAAATCAGttGGGATCTTTACAGTTGATAAAGTA
CTTGTTTATTCAAATTTGGAATTGCAAAAGAAAACTAATTTGACCGAGTC
AAAAATTAAAGAAGTGTTACATGCTGCAGCAAACTATGTTGTCACACAAA
GAGTCAAGCAAGCATCAGTTTTAGATGTTTACACCAAGTCTTCAAGTGCT
ATTGATTTTcaggttGATAAACTGAAAACAGGATGTGATGATATTGACTC
CATCCTTTCTGGTGGATTACTTATACCAGGTGTCACTGAAGTTTCAGGTG
AAAGTTCAAGTGGGAAAACACAATTTTGTTTGCAAACATGCATTCTGACA
AGTAGAGCATACAACGATTGTAAGTGTCTCTACATTTGTACTGAAGATGC
ATTTCCAAACAAACGTCTGATACAGATGACAACATCACATTCTATGTCAA
AAACTGAATCTCAAAGCATCACTGATCGTATCTTTGTAGAGCACGTTGAA
GATTTAGAAACGTTGATTTCATTTCTGGAAACAAGGATCATTAACCTTCT
TTCCAATCATAAATTGAAGTTGATCATAATTGATTCCATCACTGCTTTGT
TTCGTGTTGAATTTGAAAATTGGGAATTAGCAGCAAGAGCCAAAACATTA
GCTACCGTAGGAAAGCTGTTACATAAACTCAGTCATCAATACAAGATATG
CGTCATTTGTGTCAACCAGGTATCTGCTGTGTTTGAGCCAGAATCATCTC
TTAGTAAAAGGGAAGAAAAATTCGTGCCAGCCCTTGG

Run BLAST on NCBI

protein sequence of TCONS_00018930-protein

>TCONS_00018930-protein ID=TCONS_00018930-protein|Name=TCONS_00018930-protein|organism=Clytia hemisphaerica|type=polypeptide|length=272bp
MSLQKLDINPKYISILKSVGIFTVDKVLVYSNLELQKKTNLTESKIKEVL
HAAANYVVTQRVKQASVLDVYTKSSSAIDFQVDKLKTGCDDIDSILSGGL
LIPGVTEVSGESSSGKTQFCLQTCILTSRAYNDCKCLYICTEDAFPNKRL
IQMTTSHSMSKTESQSITDRIFVEHVEDLETLISFLETRIINLLSNHKLK
LIIIDSITALFRVEFENWELAARAKTLATVGKLLHKLSHQYKICVICVNQ
VSAVFEPESSLSKREEKFVPAL

Run BLAST on NCBI

transcript from alignment at sc0000313:344267..353032+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00018930 ID=TCONS_00018930|Name=TCONS_00018930|organism=Clytia hemisphaerica|type=transcript|length=8766bp|location=Sequence derived from alignment at sc0000313:344267..353032+ (Clytia hemisphaerica)
AAGAAGTTCATAATGTAATATTTTACACAGGGAAGGAGAGGTAAGAAGCC
TGAAAATTCTCAAGTTGTTTTTTAAAAGGTCGTAGTATGTTAAAGTGATT
GATGTCGTAGTATGCTAAGAGTTAATTTTTAGGTACTGTCTCTGAATCAC
AGTTGGTGCAAGTACTATGATTTTGGATGCaggacaaaacaaaacaaaat
ttgtttaggGGCATTTTTCGATTGTTTAGAGACCCCTTAAAAGGTTTAAA
TGGATGTGTAAATTTTATAATAATGTTATAACATTGTTATGGCTTTATGC
TAATATATACACCTTAAATTTAGGCGCGATACCATTTTGACTCCAGTAAT
GAAGGCATCAATTTTCACAAGATAAATTTCAACAATTGATTAGGCTATTA
ATAGGCTATTTGACTTTTTAACCTTATGTTTATATGTTTACTATGTTCAC
TTTTAAACAAAGTGTGCCAGACACTCAGTTGTTAGTTATACAAAAGACAG
TAGATAAAATTAAATGCGTGTAAATTGATCTACTACGAGGCTATTGTATA
ATGGAGTAAGATAAAATAGAGTCAGACGCAATGTTTTCACAGCTGGAGTC
AAAATGATTTCACGCCAAGCAAAAGGTATACATAGTATTGTCTCaatgag
aaataaaaatatatgtgACTGATTGGAATCCCCAACAATAGTTAGTCACA
CTTTTGTCCTCATAAAATGTGTATCAAATTGCTTTATCATTTACATGACT
AATTGCAAGCAAAGAATGTGCAGCAAAAATTGgatttaagaagaaaaaaa
aacctggCTCTTTCTGATGAAATTTACattttgaaagatgaaaagaTTTG
ATCCATGTAAACCTTGAAAATTAGTTTGTGGAACAAGAAAGAAGCAAGAA
GTAATCTATAGGTGAAAAGACACCCACCTATAGCAATGGGCATTGCCATC
AATATTAAATTGAATTTTCTGTGCTTTTAAATTAAGAAAACATAGCAGCG
GAATTATAGCCAAAGTTAACGATAGAAATAAAAACATCGTTTAAACCTGG
ACCAGCCGGCTGCACAAgaacaaatttttaaattatgacATTCCAAACCT
ATGCATTAGTTTGCTTACTTTCATTCAGCTTATTGCAGCTCAGCTTATAT
ATATAATTCACAGAATTCCCCAGGGAATTTCCCTTCTGTCCACTTCTTCT
TTCAGTCTGCACCACAATTAGTTTTATGGCGTGAGATGCTAGGCAATTCG
ATCTGCctagccagggtgcagtatgcagtgctgacgagtcctaataagga
cgaaatgcatatgcttctctgccacccaaatctcctgaaagaagatagtt
ggacagaaattctttgaatttcttcacatatgaGCATGAATCTGGTAATG
TGGCCCACTTTTCGATTTATTAATTTTCCTACTTTGAGGCTTTGGTGAAA
TCTCTATAGGTATATAGTCATACCAAATCTTGTTGTTTCTGGTCAATCTT
GATATGGGCAAGCTTAAACAGTAATTTTTTCTGATATAACAGGTACTCAA
ATTTTCCTATAGGGGGCTTTCCTTCAAAATGTGAacagaaaataaggttt
ttaaaaaaatgatcaaCATCATTGTTTAATAATTCATCAACAACATGCTT
TTTCCGCATGGTTTTTGTTGTTCTCACAGCCAGaggatatgaaaaatgaa
aaacacagtAAGAACcggcaaaaaaagtttttttggcatataaaatcaaa
atgttgcggacataactttttctgttcacaaagttatgtccgcacagatt
tgacacagaaaaaaattgaaaagcttTAGCTCACTGGTTTTTACATTTTN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNGTCAacgcgaaaaattattttgaagtgaA
CAGTGTCTTGTTTCCGTTCACATCTTCGAGTTATGTCCGCACACTATTTA
atcctttaaatttttcaaggaGTTATTCTTACTCAGCTGAATCATTTTTC
TATGTCAAGGGTTACATTTGGGgtcattttatacaaatttggCTATTTGT
TGGGAGACAGTGAAACAAATCAGTTTCTCCAAAAATCAGTTATGTCCgca
aaaaaaagttatgtccgcaacaaatcATGAAGTTTTCTCAACCTCCAAAC
ACCAATCTTAGGTTTCTTTGACAATTATTGCATCTAAGGTCATTNTCAGT
TTCTCCAAAAAtcagttatgtccgcaacaaaaagttatgtccgcaacaaa
tcATGAAGTTTTCTCAACCTCCAAACACCAATCTTAGGTTTCTTTGACAA
TTATTGCATCTAAGGTCATTTTAAAGTTGGTTACAACcagaaaaaagttt
cataatTTTCCATAGGCAAGATTTCCAGTTTATTTACTTCTTTCATATGT
ATttcatgttgcggacataactattttGTCTAAAATGTTGTTGATAAAGT
GTATTTGCAAGCTGGtatgatgttttattatatggaagtaatgcttaggc
tattagaaatagaaaacaaatactCTGATGTCAAGTTAAggtccaaaatg
aaaattttaacagaaaaNcaatgaaaattttaacagaaaaataaattttt
tgtttctttgaaaatgatggttCTGAACCTGTGAGCTTGAATAAAGAATA
AATCATGTATTAATTTGCATATTAAATTCATTGTGTAGTGTTCACACAAC
ATAATCTACTACACATTCACTTACAGACTAGTTAGAATTGCTCCAATAGT
NTATTAATTTGCATATCAAATTCATTGTGTAGTGTTCACACAACATAATC
TACTACACATTCACTTACAGACTAGTTAGAATTGCTCCAATAGTTCAAAA
CAGAGTCATATATTCTGTAGAAAAttgtatgttgcggacataactattta
aagtatttatcagatttttaacCCTCTTAAGCAGTTATGCTAACACCTTG
ACAATACTAAAGAGTTACATTTGTAAGTACCATGCAtttatttgcttttt
tcaattttttgtgtcctctaGGGTTGTTCTTCtattaaaaatattagaaa
gttttaatatcattgtcgagtcttcttttgttcttttcatgaagaaaaac
atgtatctgaaatcaaaccaaaccaaatcttttggttttatattgattta
gtctcaaatattccttaaattttggaaacagaaaaagacactccaaaatt
ttaaatagaTGATGTAAAATGTTCTATGGTTCTACCctggaagaaaaaaa
gttatgtccgcaacatagcATTATTATTACCCATTTAaccctttctattg
aaaaggcttttcaaggaaaaatcatatttactGATTATGAAGATGTACAA
CAGTTAATgtcaagctcaaaatttaacttttaaaattagatTATGACAAA
AAATGATATGTGATTGGATTATATTTTACagataaatcttcaattttcag
gaaatcatagttacaaagacctttcaagacaacaaatttcaatgattaag
tTTTGGTTCAAGTACAGCAAAGTATTTAAAGCCAAATAATTACTCAGTTT
AATGtttattgctgattttgaagtaaatttgacaaaaagttatgtccgca
accaacaaggtttcattttctaattttttattgatcaactgaaatatagc
aaacttttggtttttttgaaagcttataatgagtccttcaaatctagaat
gaaGTTACCTGATCATTgccagttttcttttcatgaagtcaaactttatg
ggattattttttagtattttagattttcgtcTGGAAAtagtgaatttgaa
aaatataacataCTGGAcggtaaaaattgtttttcaatgcggcttaatat
attagccatggactgaaatctaagacaagtattagattagcatattttat
ctcaaatgaagtgtaaacaacaaagagttttttgccaaatttgtctgATT
ATAACTACTCTAGGTCAAATTTCTGGACCAAGCCAGTTTGATTAAGCCCT
GGTatttatgttttctgaaaattgaagtcattaataaaatccaggaataa
aagtgaaattcaaaacttcattttttccaaatttgttcACCTATTTGGGT
GACATTACCAGATTCATGCTCATATATTTAAAGGCATCTTATAAAAATGA
ACGTTTGAGCAGATGTCACTTCAGAAATTGGACATCAATCCAAAGTACAT
TTCAATTCTTAAATCAGGTATTCTATTTGAGTATTTTACTCTGATTTTGT
ATCCATTTTGCTTTGGATGAGCTATTTTCTGAATAGAATTATAGATTTTC
CAGGATTACTTTTTCTAAGATGCTCATTTACCGAGTGTGGCAGTGCCTGA
TTATAAAAAGTTGACTCATTCAGCTTCTCcatttaatttattcaaaaaag
gtaaattttgagTGAATGCTAAAATAGTGATCTggagttttctttctttt
tagttGGGATCTTTACAGTTGATAAAGTACTTGTTTATTCAAATTTGGAA
TTGCAAAAGAAAACTAATTTGACCGAGTCAAAAATTAAAGAAGTGTTACA
TGCTGCAGCAAACTATGTTGTCACACAAAGAGTCAAGCAAGCATCAGTTT
TAGATGTTTACACCAAGTCTTCAAGTGCTATTGATTTTcaggttattatt
tttttatggctATTAATAAACAATTAACCCAAATGATTCTGTTCCTCATT
AAAGCAATGATGGCTGTCTCACTCAAGCAAAATTAGTTCCTTGCAAATTT
GTTGGTCTAAAAAAGTTAGAGACAGCATGTCGGgaaccaaaaatttttgt
tttatttgtgaTAGAACCTAaataattaaaggttttgtttttacttaagt
gtttccatttcatatcagacacttgtttcatatcaggacagtgtctacct
attgttatattgtgccatgatataagtaaaaaaatatttttattttcctc
tttctgaccaatcttgcgccacatccgtgtcaattcaatatcaaaaagct
agtaaatcaaaattgatgagtaagcaaacgatatcgctcctatttaaaaa
caaaatctttaagcCATGAAAATGAAACTTCTATCATTTATTATTTTTGC
CCTGTCGTGAAAAggaacaaaagattttttcactaTTACAATAATCCAAA
ATAAcctaaaataagtaaaaaatagaagaatgtttttctgttttcatttt
tagttgcATATGGGGACAGAGACAGGGTAACATTTATTGCAGATTATTAA
CCTGTAGGTAGTTTTTTGAAGTGGTACCCTAacggtagcactactcaata
gtaGTGAgggtagcactactcaatagtaGTGTAAATTCATTGAGAGAGCT
TTATCGACTTCTCCTTAAATACCTGTAATGATTAGTGCCTTTTgatgtta
atttttaacactgcaatggcttctttgcgggtaccactttaAAGAAATTC
TGATCAAATACGGCAGATACAGCTTGATACAGTGTTTCTACAATGCTTTT
TTTAAAATACACTCatctttataatttttattttattttcaaaggttGAT
AAACTGAAAACAGGATGTGATGATATTGACTCCATCCTTTCTGGTGGATT
ACTTATACCAGGTGTCACTGAAGTTTCAGGTGAAAGTTCAAGTGGGAAAA
CACAATTTTGTTTGCAAACATGCATTCTGACAAGTAGAGCATACAACGAT
TGTAGTAAGTGTGGGATTTCAATTCAAATGATAAGAAATAGCATTGCATC
CTTGCTTTGTTTCAACTTACTTTACACATCTTTGTGATTAATTAAAAACG
CAAATCCACCTTATTAAGTGGATCAATTCACATGATGATCGTATTTTGCG
AGCTCCAGGATTTATAAATTCTCCAGATTGAGAGTATACTTTTTTGTTAG
AAACCTGGTAGAGGATTTTGGAATAAAGGGGATTGTTTATTTAGGGGAGA
TTAGTGAACCCAGTGATCCCAGCTGTGCTAATTTTATTCATTTGCATTTC
AGAGTGTCTCTACATTTGTACTGAAGATGCATTTCCAAACAAACGTCTGA
TACAGATGACAACATCACATTCTATGTCAAAAACTGAATCTCAAAGCATC
ACTGATCGTATCTTTGTAGAGCACGTTGAAGATTTAGTAATTTTTTTTTA
TCTTTACGCCATGATAAAATACGTTGTCGAAAGTGGTTTTGATATTAAAC
AAAACATTCGAAAAGTATCAAAAATTCTCCTGGGTTTATCCTATAATCAA
TATACTTTGAGATGTCAGCCTATTAGTATTACACAATATTGCTAATATTG
TTTATTTGAGTTGAATGATAACCTTGTAAAGTTAAGAGTTGTTTGAGTAA
TTATTGTTCTTAAATTCATTATTAGGAAACGTTGATTTCATTTCTGGAAA
CAAGGATCATTAACCTTCTTTCCAATCATAAATTGAAGTTGATCATAATT
GATTCCATCACTGCTTTGTTTCGTGTTGAATTTGAAAATTGGGAATTAGC
AGCAAGAGCCAAAACATTAGCTACCGTAGGAAAGCTGTTACATAAACTCA
GTCATCAATACAAGATATGCGTCATTTGTGTCAACCAGGTGAGAGAGTAT
CATTTTGTTTATTATTCCTTAAATAAATGCAACTTGAAAATACCACCCAT
TTTAACTCCAAGGCATCTGGAACTAATAAGTAAAGTATTATCAACTTTCA
GAATGACATTTGAAAGCCTTTATTAGAGGAAATACGATATTCAAGCAATT
ACTCCAATCATCAGTCTCTGACAAAGGAAAAAGGCTCCCAGGAATTCCTA
CTCATTTTTCCAATTGTGCTAAAAAGACTATTGATCTCATAAAGTGAAAT
GAAGACTAaagaaatgaaagtgaaaaactcttgaaagggaaaactttctc
aaaacatcATTTCTTTTACACAACTTGTTGTTTTCTGTGTGCTTTCATTT
TAAGCATTAATTGTTTaatttatttcaagttaatTCCCTTTCTGTTTATT
TGATAGGTATCTGCTGTGTTTGAGCCAGAATCATCTCTTAGTAAAAGGTA
TCTTTTTAGTCAAGAACTCTTGGAATAATCAGTAATAATGGGGTAGTATT
GTTTGGAAATTAAAAACTGAAGGCATGTTGAAAATTCAAGGtttatttga
agtttttgaggGTCATGCACCAAATCAGTGCTAAAACTGCCAAGTAAGAT
GAAATCAAAGAATTAATTATAAGCTCAAACAAATTGATAATTCTCAACTT
CAGTTGAGCTAGAATCTAAGAATGTCTATCTGTGTGTCTGTGTGTGTGTC
TGTCACAAAAACTTTGGGGCAGGCTGGAGACTTCAAAAATGGTCCGATTT
GGCTGAAATGTAGCACACTTGATCCTTGGGTGAATCCCTGGGGTGATTTT
TATCATTTTCTGAAAATTTTCATTTTTAAGGGCGTGGTCACGAGTTTTAG
TCCCAAAACGaggctaaaactttggggcaggctggaaaCGTCAAACATGG
TCGGATTTGatttgttccttgggtgaatatctgggggtacatgtttcatt
ttaaaaaaaattttcttgttggggcctggggactagtttttagcctaaac
gcGGCTAAACCCTATTTAAGAAAtgctaaaatttttcttaagccattaag
tttacaattgggcctaggaatgatttcaaagatactgaagttgagccagt
gcggttagcacgttcgacNTGGGCCTaggaatgatttcaaagatactgaa
gttgagccagtgcggttagcacgttcgataGTTTGTTACGCTACCACCAT
GATTTCAGAGCGTCTTTAATGAAGAACTTTAAAGAACGTTTAACCGTCAT
GGAAAATTAAACTATGCATACATGTTTCATTCTTCTGTGCTAAAGTAAAA
ACGCTCagaatgtatgtatgtatgctACACTAATGGACCTCTGTTACTGT
TATTGCTATGGTTACTCTGAACTTCTAATCGCCCAACTTCAGTTGAGcaa
caatctgacaatgtctgtgtgtgtgtctgtctgtctgtcacaaaaacttt
agggcagcctggagactttaaaaatgcttggatttggctgaaatctgTCA
Cacttccttgggtgaatatctgggggtgtttttttcattttttgaaaatt
ttgatttttggggcctggggacgagtttttcgccaaaacgagNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatatct
gggggtgtttttttcattttttgaaaattttgatttttggggcctgggga
cgagtttttcgccaaaacgaggctaaaactttagggcagcctggtgactt
caaaaatggtcggatttggctgaaatttggcacacttgtcccttgggtaa
atatctggggtctacgattgggcctatgaataatttgaagccactgaagt
tgagcccagtgcgttgcgcacgttcgattATACAACACAACTGATACAAA
AAAGACCATATTACTGCCGTCTTCTACGTTTGTCTTATTATGCTTTCATA
TTTCCAACACATTACTCAAGAAAACTAGTATTCGTTTAGGGAAGAAAAAT
TCGTGCCAGCCCTTGG

Coding sequence (CDS) from alignment at sc0000313:344267..353032+

>TCONS_00018930 ID=TCONS_00018930|Name=TCONS_00018930|organism=Clytia hemisphaerica|type=CDS|length=5712bp|location=Sequence derived from alignment at sc0000313:344267..353032+ (Clytia hemisphaerica)
ATGTCACTTCAGAAATTGGACATCAATCCAAAGTACATTTCAATTCTTAA
ATCAGttGGGATCTTTACAGTTGATAAAGTACTTGTTTATTCAAATTTGG
AATTGCAAAAGAAAACTAATTTGACCGAGTCAAAAATTAAAGAAGTGTTA
CATGCTGCAGCAAACTATGTTGTCACACAAAGAGTCAAGCAAGCATCAGT
TTTAGATGTTTACACCAAGTCTTCAAGTGCTATTGATTTTcaggttGATA
AACTGAAAACAGGATGTGATGATATTGACTCCATCCTTTCTGGTGGATTA
CTTATACCAGGTGTCACTGAAGTTTCAGGTGAAAGTTCAAGTGGGAAAAC
ACAATTTTGTTTGCAAACATGCATTCTGACAAGTAGAGCATACAACGATT
GTAAGTGTCTCTACATTTGTACTGAAGATGCATTTCCAAACAAACGTCTG
ATACAGATGACAACATCACATTCTATGTCAAAAACTGAATCTCAAAGCAT
CACTGATCGTATCTTTGTAGAGCACGTTGAAGATTTAGAAACGTTGATTT
CATTTCTGGAAACAAGGATCATTAACCTTCTTTCCAATCATAAATTGAAG
TTGATCATAATTGATTCCATCACTGCTTTGTTTCGTGTTGAATTTGAAAA
TTGGGAATTAGCAGCAAGAGCCAAAACATTAGCTACCGTAGGAAAGCTGT
TACATAAACTCAGTCATCAATACAAGATATGCGTCATTTGTGTCAACCAG
GTATCTGCTGTGTTTGAGCCAGAATCATCTCTTAGTAAAAGGGAAGAAAA
ATTCGTGCCAGCCCTTATGTCACTTCAGAAATTGGACATCAATCCAAAGT
ACATTTCAATTCTTAAATCAGttGGGATCTTTACAGTTGATAAAGTACTT
GTTTATTCAAATTTGGAATTGCAAAAGAAAACTAATTTGACCGAGTCAAA
AATTAAAGAAGTGTTACATGCTGCAGCAAACTATGTTGTCACACAAAGAG
TCAAGCAAGCATCAGTTTTAGATGTTTACACCAAGTCTTCAAGTGCTATT
GATTTTcaggttGATAAACTGAAAACAGGATGTGATGATATTGACTCCAT
CCTTTCTGGTGGATTACTTATACCAGGTGTCACTGAAGTTTCAGGTGAAA
GTTCAAGTGGGAAAACACAATTTTGTTTGCAAACATGCATTCTGACAAGT
AGAGCATACAACGATTGTAAGTGTCTCTACATTTGTACTGAAGATGCATT
TCCAAACAAACGTCTGATACAGATGACAACATCACATTCTATGTCAAAAA
CTGAATCTCAAAGCATCACTGATCGTATCTTTGTAGAGCACGTTGAAGAT
TTAGAAACGTTGATTTCATTTCTGGAAACAAGGATCATTAACCTTCTTTC
CAATCATAAATTGAAGTTGATCATAATTGATTCCATCACTGCTTTGTTTC
GTGTTGAATTTGAAAATTGGGAATTAGCAGCAAGAGCCAAAACATTAGCT
ACCGTAGGAAAGCTGTTACATAAACTCAGTCATCAATACAAGATATGCGT
CATTTGTGTCAACCAGGTATCTGCTGTGTTTGAGCCAGAATCATCTCTTA
GTAAAAGGGAAGAAAAATTCGTGCCAGCCCTTATGTCACTTCAGAAATTG
GACATCAATCCAAAGTACATTTCAATTCTTAAATCAGttGGGATCTTTAC
AGTTGATAAAGTACTTGTTTATTCAAATTTGGAATTGCAAAAGAAAACTA
ATTTGACCGAGTCAAAAATTAAAGAAGTGTTACATGCTGCAGCAAACTAT
GTTGTCACACAAAGAGTCAAGCAAGCATCAGTTTTAGATGTTTACACCAA
GTCTTCAAGTGCTATTGATTTTcaggttGATAAACTGAAAACAGGATGTG
ATGATATTGACTCCATCCTTTCTGGTGGATTACTTATACCAGGTGTCACT
GAAGTTTCAGGTGAAAGTTCAAGTGGGAAAACACAATTTTGTTTGCAAAC
ATGCATTCTGACAAGTAGAGCATACAACGATTGTAAGTGTCTCTACATTT
GTACTGAAGATGCATTTCCAAACAAACGTCTGATACAGATGACAACATCA
CATTCTATGTCAAAAACTGAATCTCAAAGCATCACTGATCGTATCTTTGT
AGAGCACGTTGAAGATTTAGAAACGTTGATTTCATTTCTGGAAACAAGGA
TCATTAACCTTCTTTCCAATCATAAATTGAAGTTGATCATAATTGATTCC
ATCACTGCTTTGTTTCGTGTTGAATTTGAAAATTGGGAATTAGCAGCAAG
AGCCAAAACATTAGCTACCGTAGGAAAGCTGTTACATAAACTCAGTCATC
AATACAAGATATGCGTCATTTGTGTCAACCAGGTATCTGCTGTGTTTGAG
CCAGAATCATCTCTTAGTAAAAGGGAAGAAAAATTCGTGCCAGCCCTTAT
GTCACTTCAGAAATTGGACATCAATCCAAAGTACATTTCAATTCTTAAAT
CAGttGGGATCTTTACAGTTGATAAAGTACTTGTTTATTCAAATTTGGAA
TTGCAAAAGAAAACTAATTTGACCGAGTCAAAAATTAAAGAAGTGTTACA
TGCTGCAGCAAACTATGTTGTCACACAAAGAGTCAAGCAAGCATCAGTTT
TAGATGTTTACACCAAGTCTTCAAGTGCTATTGATTTTcaggttGATAAA
CTGAAAACAGGATGTGATGATATTGACTCCATCCTTTCTGGTGGATTACT
TATACCAGGTGTCACTGAAGTTTCAGGTGAAAGTTCAAGTGGGAAAACAC
AATTTTGTTTGCAAACATGCATTCTGACAAGTAGAGCATACAACGATTGT
AAGTGTCTCTACATTTGTACTGAAGATGCATTTCCAAACAAACGTCTGAT
ACAGATGACAACATCACATTCTATGTCAAAAACTGAATCTCAAAGCATCA
CTGATCGTATCTTTGTAGAGCACGTTGAAGATTTAGAAACGTTGATTTCA
TTTCTGGAAACAAGGATCATTAACCTTCTTTCCAATCATAAATTGAAGTT
GATCATAATTGATTCCATCACTGCTTTGTTTCGTGTTGAATTTGAAAATT
GGGAATTAGCAGCAAGAGCCAAAACATTAGCTACCGTAGGAAAGCTGTTA
CATAAACTCAGTCATCAATACAAGATATGCGTCATTTGTGTCAACCAGGT
ATCTGCTGTGTTTGAGCCAGAATCATCTCTTAGTAAAAGGGAAGAAAAAT
TCGTGCCAGCCCTTATGTCACTTCAGAAATTGGACATCAATCCAAAGTAC
ATTTCAATTCTTAAATCAGttGGGATCTTTACAGTTGATAAAGTACTTGT
TTATTCAAATTTGGAATTGCAAAAGAAAACTAATTTGACCGAGTCAAAAA
TTAAAGAAGTGTTACATGCTGCAGCAAACTATGTTGTCACACAAAGAGTC
AAGCAAGCATCAGTTTTAGATGTTTACACCAAGTCTTCAAGTGCTATTGA
TTTTcaggttGATAAACTGAAAACAGGATGTGATGATATTGACTCCATCC
TTTCTGGTGGATTACTTATACCAGGTGTCACTGAAGTTTCAGGTGAAAGT
TCAAGTGGGAAAACACAATTTTGTTTGCAAACATGCATTCTGACAAGTAG
AGCATACAACGATTGTAAGTGTCTCTACATTTGTACTGAAGATGCATTTC
CAAACAAACGTCTGATACAGATGACAACATCACATTCTATGTCAAAAACT
GAATCTCAAAGCATCACTGATCGTATCTTTGTAGAGCACGTTGAAGATTT
AGAAACGTTGATTTCATTTCTGGAAACAAGGATCATTAACCTTCTTTCCA
ATCATAAATTGAAGTTGATCATAATTGATTCCATCACTGCTTTGTTTCGT
GTTGAATTTGAAAATTGGGAATTAGCAGCAAGAGCCAAAACATTAGCTAC
CGTAGGAAAGCTGTTACATAAACTCAGTCATCAATACAAGATATGCGTCA
TTTGTGTCAACCAGGTATCTGCTGTGTTTGAGCCAGAATCATCTCTTAGT
AAAAGGGAAGAAAAATTCGTGCCAGCCCTTATGTCACTTCAGAAATTGGA
CATCAATCCAAAGTACATTTCAATTCTTAAATCAGttGGGATCTTTACAG
TTGATAAAGTACTTGTTTATTCAAATTTGGAATTGCAAAAGAAAACTAAT
TTGACCGAGTCAAAAATTAAAGAAGTGTTACATGCTGCAGCAAACTATGT
TGTCACACAAAGAGTCAAGCAAGCATCAGTTTTAGATGTTTACACCAAGT
CTTCAAGTGCTATTGATTTTcaggttGATAAACTGAAAACAGGATGTGAT
GATATTGACTCCATCCTTTCTGGTGGATTACTTATACCAGGTGTCACTGA
AGTTTCAGGTGAAAGTTCAAGTGGGAAAACACAATTTTGTTTGCAAACAT
GCATTCTGACAAGTAGAGCATACAACGATTGTAAGTGTCTCTACATTTGT
ACTGAAGATGCATTTCCAAACAAACGTCTGATACAGATGACAACATCACA
TTCTATGTCAAAAACTGAATCTCAAAGCATCACTGATCGTATCTTTGTAG
AGCACGTTGAAGATTTAGAAACGTTGATTTCATTTCTGGAAACAAGGATC
ATTAACCTTCTTTCCAATCATAAATTGAAGTTGATCATAATTGATTCCAT
CACTGCTTTGTTTCGTGTTGAATTTGAAAATTGGGAATTAGCAGCAAGAG
CCAAAACATTAGCTACCGTAGGAAAGCTGTTACATAAACTCAGTCATCAA
TACAAGATATGCGTCATTTGTGTCAACCAGGTATCTGCTGTGTTTGAGCC
AGAATCATCTCTTAGTAAAAGGGAAGAAAAATTCGTGCCAGCCCTTATGT
CACTTCAGAAATTGGACATCAATCCAAAGTACATTTCAATTCTTAAATCA
GttGGGATCTTTACAGTTGATAAAGTACTTGTTTATTCAAATTTGGAATT
GCAAAAGAAAACTAATTTGACCGAGTCAAAAATTAAAGAAGTGTTACATG
CTGCAGCAAACTATGTTGTCACACAAAGAGTCAAGCAAGCATCAGTTTTA
GATGTTTACACCAAGTCTTCAAGTGCTATTGATTTTcaggttGATAAACT
GAAAACAGGATGTGATGATATTGACTCCATCCTTTCTGGTGGATTACTTA
TACCAGGTGTCACTGAAGTTTCAGGTGAAAGTTCAAGTGGGAAAACACAA
TTTTGTTTGCAAACATGCATTCTGACAAGTAGAGCATACAACGATTGTAA
GTGTCTCTACATTTGTACTGAAGATGCATTTCCAAACAAACGTCTGATAC
AGATGACAACATCACATTCTATGTCAAAAACTGAATCTCAAAGCATCACT
GATCGTATCTTTGTAGAGCACGTTGAAGATTTAGAAACGTTGATTTCATT
TCTGGAAACAAGGATCATTAACCTTCTTTCCAATCATAAATTGAAGTTGA
TCATAATTGATTCCATCACTGCTTTGTTTCGTGTTGAATTTGAAAATTGG
GAATTAGCAGCAAGAGCCAAAACATTAGCTACCGTAGGAAAGCTGTTACA
TAAACTCAGTCATCAATACAAGATATGCGTCATTTGTGTCAACCAGGTAT
CTGCTGTGTTTGAGCCAGAATCATCTCTTAGTAAAAGGGAAGAAAAATTC
GTGCCAGCCCTT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010610	XLOC_010610	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00018930-protein	TCONS_00018930-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000313	supercontig	sc0000313:344267..353032 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
33.6986	30.4632	39.755	43.1254	8.60905	7.30484	10.4276	12.4074	12.1261	8.79362	7.74009	12.6155	7.16902	11.3484	10.3401	12.7228	8.44557	12.1995	4.28311	3.9581	8.24662	6.88499	15.7193	13.0365	20.5062	26.424	4.5203	3.44585	5.74982	6.98244

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR013632	DNA_recomb/repair_Rad51_C
IPR020588	RecA_ATP-bd
IPR027417	P-loop_NTPase
IPR010995	DNA_repair_Rad51/TF_NusA_a-hlx

Vocabulary: **Molecular Function**
Term	Definition
GO:0008094	DNA-dependent ATPase activity
GO:0005524	ATP binding
GO:0003677	DNA binding
GO:0000166	nucleotide binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006281	DNA repair

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008094	DNA-dependent ATPase activity
molecular_function	GO:0000166	nucleotide binding

Blast

[Close]

BLAST of TCONS_00018930 vs. Swiss-Prot (Human)
Match: XRCC3 (DNA repair protein XRCC3 OS=Homo sapiens GN=XRCC3 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.705e-40
Identity = 97/289 (33.56%), Postives = 162/289 (56.06%), Query Frame = 1

Query:   70 MSLQKLDINPKYISILKSVGIFTVDKVLVYSNLELQKKTNLTESKIKEVLHAAANYVVTQRVKQASVLDVYTKSSSAIDF--QVDKLKTGCDDIDSILSGGLLIPXXXXXXXXXXXXKTQFCLQTCILT--SRAYN--DCKCLYICTEDAFPNKRLIQMTTSHSMSKTESQS-------ITDRIFVEHVEDLETLISFLETRIINLLSNHKLKLIIIDSITALFRVEFENWELAARAKTLATVGKLLHKLSHQYKICVICVNQVSAVFEPESS----LSKREEKFVPAL 885
            M L  LD+NP+ I+ +K   + +V +VL +S  +L++ TNL+  ++  +L  A+ ++     + +S+L           F  Q  +L  GC  +D++L GGL + G+TE++G SS+GKTQ  LQ C+     R +   +   +YICTEDAFP+KRL Q+       +T+             +IF+EHV D++TL+  +  ++  LLS    +L++IDS+ A FR EF++   A RA+ L ++G  L +LS  ++  V+C+NQV+   E + +    L   +E+  PAL
Sbjct:    1 MDLDLLDLNPRIIAAIKKAKLKSVKEVLHFSGPDLKRLTNLSSPEVWHLLRTASLHL-----RGSSILTALQLHQQKERFPTQHQRLSLGCPVLDALLRGGLPLDGITELAGRSSAGKTQLALQLCLAVQFPRQHGGLEAGAVYICTEDAFPHKRLQQLMAQQPRLRTDVPGELLQKLRFGSQIFIEHVADVDTLLECVNKKVPVLLSRGMARLVVIDSVAAPFRCEFDSQASAPRARHLQSLGATLRELSSAFQSPVLCINQVTEAMEEQGAAHGPLGFWDERVSPAL 284

The following BLAST results are available for this feature:

BLAST of TCONS_00018930 vs. Swiss-Prot (Human)

BLAST of TCONS_00018930 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
XRCC3	2.705e-40	33.56	DNA repair protein XRCC3 OS=Homo sapiens GN=XRCC3 ...	[more]

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TCONS_00018930 (transcript) - C. hemisphaerica